Amd1-ps2 (adenosylmethionine decarboxylase 1, pseudogene 2)

Gene: Amd1-ps2 (adenosylmethionine decarboxylase 1, pseudogene 2) Rattus norvegicus

Analyze

Symbol:

Amd1-ps2

Name:

adenosylmethionine decarboxylase 1, pseudogene 2

RGD ID:

1583841

Description:

Type:

pseudo

RefSeq Status:

INFERRED

Previously known as:

Amd-ps; Amdp; AMDP2; S-adenosylmethionine decarboxylase, pseudogene (mapped)

Related Functional Gene:

Amd1

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	154,318,198 - 154,321,241 (+)	NCBI		GRCr8
mRatBN7.2	X	149,273,397 - 149,276,440 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	X	151,467,611 - 151,470,654 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	155,001,807 - 155,004,850 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	152,543,364 - 152,546,407 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	51,483,434 - 51,486,474 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	14	51,642,606 - 51,645,901 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	157,004,764 - 157,005,658 (+)	ENTREZGENE	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Cytogenetic Map	X	q37	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:8854869	PMID:9620866

Genomics

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	100567703	150256146	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat
634346	Insul4	Insulin level QTL 4	0		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	X	126975089	152453651	Rat

Markers in Region

Amd1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	149,273,775 - 149,274,413 (-)	MAPPER	mRatBN7.2
Rnor_6.0	14	51,485,458 - 51,486,095	NCBI	Rnor6.0
Rnor_5.0	14	51,644,789 - 51,645,426	UniSTS	Rnor5.0
Cytogenetic Map	20	q12	UniSTS
Cytogenetic Map	X	q37	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NG_005126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U40718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-725	BioCyc
NCBI Gene	309358	ENTREZGENE
PhenoGen	Amd1-ps2	PhenoGen

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-10-22	Amd1-ps2	adenosylmethionine decarboxylase 1, pseudogene 2	Amd-ps	S-adenosylmethionine decarboxylase, pseudogene (mapped)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	Amd-ps	S-adenosylmethionine decarboxylase, pseudogene (mapped)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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