Trub2-ps1 (TruB pseudouridine synthase family member 2, pseudogene 1) - Rat Genome Database

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Gene: Trub2-ps1 (TruB pseudouridine synthase family member 2, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Trub2-ps1
Name: TruB pseudouridine synthase family member 2, pseudogene 1
RGD ID: 1583715
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC501774; similar to TruB pseudouridine (psi) synthase homolog 2; TruB pseudouridine (psi) synthase homolog 2 (E. coli), pseudogene 1
Related Functional Gene: Trub2  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81146,357,724 - 46,358,978 (+)NCBIGRCr8
mRatBN7.21132,871,893 - 32,873,147 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01133,829,876 - 33,831,130 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01137,419,282 - 37,420,536 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41133,800,692 - 33,801,750 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1135,476,881 - 35,478,134 (-)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Trub2-ps1
7 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat

Markers in Region
RH135147  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2313,049,268 - 13,049,448 (+)MAPPERmRatBN7.2
Rnor_6.038,338,042 - 8,338,221NCBIRnor6.0
Rnor_5.0313,681,231 - 13,681,410UniSTSRnor5.0
Celera1135,476,442 - 35,476,621UniSTS
Celera37,826,933 - 7,827,112UniSTS
Cytogenetic Map11q11UniSTS
Cytogenetic Map3p12UniSTS
GDB:371657  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21132,887,264 - 32,888,181 (+)MAPPERmRatBN7.2
mRatBN7.21132,871,182 - 32,872,100 (+)MAPPERmRatBN7.2
Rnor_6.01133,839,789 - 33,840,706NCBIRnor6.0
Rnor_6.01133,829,166 - 33,830,083NCBIRnor6.0
Rnor_5.01137,431,364 - 37,432,281UniSTSRnor5.0
Rnor_5.01137,418,572 - 37,419,489UniSTSRnor5.0
RGSC_v3.41133,799,986 - 33,800,903UniSTSRGSC3.4
Cytogenetic Map11q11UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_007016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 501774 ENTREZGENE
PhenoGen Trub2-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-07 Trub2-ps1  TruB pseudouridine synthase family member 2, pseudogene 1  Trub2-ps1  TruB pseudouridine (psi) synthase homolog 2 (E. coli), pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-15 Trub2-ps1  TruB pseudouridine (psi) synthase homolog 2 (E. coli), pseudogene 1  LOC501774  similar to TruB pseudouridine (psi) synthase homolog 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC501774  similar to TruB pseudouridine (psi) synthase homolog 2      Symbol and Name status set to provisional 70820 PROVISIONAL