Lcnl (Lipocalin like) - Rat Genome Database

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Gene: Lcnl (Lipocalin like) Rattus norvegicus
Analyze
Symbol: Lcnl (Ensembl: LOC681186)
Name: Lipocalin like (Ensembl:hypothetical protein LOC681186)
RGD ID: 1583505
Description: Predicted to enable small molecule binding activity. Predicted to be located in extracellular region.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC681186; LOC681186; rCG45447-like; uncharacterized protein LOC681186; vomeronasal secretory protein 2
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8329,870,542 - 29,875,304 (+)NCBIGRCr8
mRatBN7.239,472,456 - 9,477,218 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl39,472,456 - 9,477,217 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.034,095,698 - 4,104,349 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.039,460,416 - 9,463,774 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.434,827,216 - 4,829,971 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera34,287,750 - 4,296,410 (+)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Lcnl
18 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat

Markers in Region
BF403347  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.239,476,808 - 9,477,158 (+)MAPPERmRatBN7.2
mRatBN7.239,483,144 - 9,483,494 (+)MAPPERmRatBN7.2
Rnor_6.034,186,082 - 4,186,431NCBIRnor6.0
Rnor_6.034,103,940 - 4,104,289NCBIRnor6.0
Rnor_5.039,544,786 - 9,545,135UniSTSRnor5.0
Rnor_5.039,463,365 - 9,463,714UniSTSRnor5.0
RGSC_v3.434,829,562 - 4,829,911UniSTSRGSC3.4
Celera34,296,001 - 4,296,350UniSTS
Cytogenetic Map3p13UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000101040   ⟹   ENSRNOP00000081643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl39,472,456 - 9,477,217 (+)Ensembl
RefSeq Acc Id: NM_001408963   ⟹   NP_001395892
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,870,542 - 29,875,304 (+)NCBI
mRatBN7.239,472,456 - 9,477,218 (+)NCBI
RefSeq Acc Id: XM_063284546   ⟹   XP_063140616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,870,576 - 29,875,304 (+)NCBI
RefSeq Acc Id: XM_063284547   ⟹   XP_063140617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,872,666 - 29,875,304 (+)NCBI
RefSeq Acc Id: XM_063284548   ⟹   XP_063140618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,872,683 - 29,875,304 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001395892 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140616 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140617 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140618 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL93476 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000075546.2
  ENSRNOP00000081643
  ENSRNOP00000081643.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000081643   ⟸   ENSRNOT00000101040
RefSeq Acc Id: NP_001395892   ⟸   NM_001408963
- Peptide Label: precursor
- UniProtKB: A0A8I5ZT42 (UniProtKB/TrEMBL),   A0A0G2KAV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140616   ⟸   XM_063284546
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063140617   ⟸   XM_063284547
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063140618   ⟸   XM_063284548
- Peptide Label: isoform X3

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-50352 BioCyc
Ensembl Genes ENSRNOG00000056471 UniProtKB/TrEMBL
  ENSRNOG00000069282 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000078985.2 UniProtKB/TrEMBL
  ENSRNOT00000101040 ENTREZGENE
  ENSRNOT00000101040.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/TrEMBL
InterPro Calycin UniProtKB/TrEMBL
  Lipocalin UniProtKB/TrEMBL
NCBI Gene 681186 ENTREZGENE
PANTHER LIPOCALIN 1-LIKE PROTEIN 1-RELATED UniProtKB/TrEMBL
  PTHR11430 UniProtKB/TrEMBL
PhenoGen Lcnl PhenoGen
RatGTEx ENSRNOG00000056471 RatGTEx
  ENSRNOG00000069282 RatGTEx
Superfamily-SCOP SSF50814 UniProtKB/TrEMBL
UniProt A0A0G2KAV9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZT42 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Lcnl  Lipocalin like  LOC681186  hypothetical protein LOC681186  Symbol and Name Changed 1299863 APPROVED
2013-05-24 LOC681186  hypothetical protein LOC681186  LOC100364323  rCG45447-like  Data merged from RGD:2321235 1643240 APPROVED
2010-05-05 LOC100364323  rCG45447-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC681186  hypothetical protein LOC681186  LOC687422  hypothetical protein LOC687422  Data merged from RGD:1585382 1643240 APPROVED
2006-11-19 LOC681186  hypothetical protein LOC681186      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687422  hypothetical protein LOC687422      Symbol and Name status set to provisional 70820 PROVISIONAL