Meg3 (maternally expressed 3) - Rat Genome Database

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Gene: Meg3 (maternally expressed 3) Rattus norvegicus
Analyze
Symbol: Meg3
Name: maternally expressed 3
RGD ID: 1566401
Description: Predicted to be involved in chromatin organization. Predicted to act upstream of or within several processes, including determination of adult lifespan; epigenetic regulation of gene expression; and lung alveolus development. Predicted to be active in nucleus; PARTICIPATES IN Huntington's disease pathway; INTERACTS WITH 6-propyl-2-thiouracil; DDE; isoflurane.
Type: ncrna
RefSeq Status: VALIDATED
Previously known as: Gtl2; LOC500717; RGD1566401; similar to GTL2, imprinted maternally expressed untranslated
RGD Orthologs
Human
Mouse
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86134,274,056 - 134,306,249 (+)NCBIGRCr8
mRatBN7.26128,491,808 - 128,524,010 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx6128,632,578 - 128,664,748 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06128,928,418 - 128,960,586 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06128,289,296 - 128,321,469 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06133,658,937 - 133,691,130 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06142,821,636 - 142,853,214 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46134,121,598 - 134,137,309 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6126,041,041 - 126,073,121 (+)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1,4-dioxane  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-acetamidofluorene  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
carmustine  (ISO)
cerium trichloride  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chloroprene  (ISO)
choline  (ISO)
chrysene  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
DDE  (EXP)
DDT  (ISO)
Deoxyschizandrin  (ISO)
diarsenic trioxide  (ISO)
dichloroacetic acid  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
fipronil  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
graphene oxide  (ISO)
isoflurane  (EXP,ISO)
L-methionine  (ISO)
lead(0)  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methoxychlor  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
ozone  (ISO)
paracetamol  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
propanal  (ISO)
S-adenosyl-L-methioninate  (ISO)
S-adenosyl-L-methionine  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
tebuconazole  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
titanium dioxide  (ISO)
tremolite asbestos  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:27900677   PMID:28634073   PMID:29130945   PMID:30012476   PMID:31190362   PMID:31366567   PMID:31392726   PMID:31539151   PMID:31773666   PMID:31794744   PMID:32050796  
PMID:32436312   PMID:33179099   PMID:33284093   PMID:33394187   PMID:33410373   PMID:33472171   PMID:34318924   PMID:34399782   PMID:34609952   PMID:35164634   PMID:35998683   PMID:36424837  
PMID:37303036   PMID:37807305   PMID:38531801  


Genomics

Comparative Map Data
Meg3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86134,274,056 - 134,306,249 (+)NCBIGRCr8
mRatBN7.26128,491,808 - 128,524,010 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx6128,632,578 - 128,664,748 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06128,928,418 - 128,960,586 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06128,289,296 - 128,321,469 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06133,658,937 - 133,691,130 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06142,821,636 - 142,853,214 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46134,121,598 - 134,137,309 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6126,041,041 - 126,073,121 (+)NCBICelera
Cytogenetic Map6q32NCBI
MEG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814100,826,108 - 100,861,026 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14100,779,410 - 100,861,031 (+)EnsemblGRCh38hg38GRCh38
GRCh3714101,292,445 - 101,327,363 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614100,362,198 - 100,397,121 (+)NCBINCBI36Build 36hg18NCBI36
Build 3414100,362,208 - 100,397,111NCBI
Celera1481,346,520 - 81,381,440 (+)NCBICelera
Cytogenetic Map14q32.2NCBI
HuRef1481,473,326 - 81,508,256 (+)NCBIHuRef
CHM1_114101,230,256 - 101,265,172 (+)NCBICHM1_1
T2T-CHM13v2.01495,060,996 - 95,095,916 (+)NCBIT2T-CHM13v2.0
Meg3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,506,879 - 109,538,163 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12109,506,879 - 109,538,165 (+)EnsemblGRCm39 Ensembl
GRCm3812109,540,996 - 109,571,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,541,001 - 109,571,726 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,779,206 - 110,809,939 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612109,993,425 - 110,009,519 (+)NCBIMGSCv36mm8
Celera12110,734,921 - 110,766,108 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.25NCBI

Variants

.
Variants in Meg3
91 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6116506292130245370Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat

Markers in Region
RH131086  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26128,523,701 - 128,523,920 (+)MAPPERmRatBN7.2
Rnor_6.06133,690,822 - 133,691,040NCBIRnor6.0
Rnor_5.06142,852,906 - 142,853,124UniSTSRnor5.0
RGSC_v3.46134,149,218 - 134,149,436UniSTSRGSC3.4
Celera6126,072,813 - 126,073,031UniSTS
RH 3.4 Map6790.2UniSTS
Cytogenetic Map6q32UniSTS
RH142531  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26128,498,264 - 128,498,403 (+)MAPPERmRatBN7.2
Rnor_6.06133,665,403 - 133,665,541NCBIRnor6.0
Rnor_5.06142,827,487 - 142,827,625UniSTSRnor5.0
RGSC_v3.46134,123,621 - 134,123,759UniSTSRGSC3.4
Celera6126,047,514 - 126,047,652UniSTS
RH 3.4 Map6791.5UniSTS
Cytogenetic Map6q32UniSTS
RH144192  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26128,520,069 - 128,520,205 (+)MAPPERmRatBN7.2
Rnor_6.06133,687,192 - 133,687,327NCBIRnor6.0
Rnor_5.06142,849,276 - 142,849,411UniSTSRnor5.0
RGSC_v3.46134,145,588 - 134,145,723UniSTSRGSC3.4
Celera6126,069,183 - 126,069,318UniSTS
RH 3.4 Map6791.3UniSTS
Cytogenetic Map6q32UniSTS
BI283861  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26128,517,242 - 128,517,443 (+)MAPPERmRatBN7.2
Rnor_6.06133,684,365 - 133,684,565NCBIRnor6.0
Rnor_5.06142,846,449 - 142,846,649UniSTSRnor5.0
RGSC_v3.46134,142,761 - 134,142,961UniSTSRGSC3.4
Celera6126,066,356 - 126,066,556UniSTS
RH 3.4 Map6790.1UniSTS
Cytogenetic Map6q32UniSTS
BE115920  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26128,513,545 - 128,513,718 (+)MAPPERmRatBN7.2
Rnor_6.06133,680,668 - 133,680,840NCBIRnor6.0
Rnor_5.06142,842,752 - 142,842,924UniSTSRnor5.0
RGSC_v3.46134,139,064 - 134,139,236UniSTSRGSC3.4
Celera6126,062,659 - 126,062,831UniSTS
RH 3.4 Map6791.5UniSTS
Cytogenetic Map6q32UniSTS
RH135450  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26128,495,900 - 128,496,106 (+)MAPPERmRatBN7.2
Rnor_6.06133,663,041 - 133,663,246NCBIRnor6.0
Rnor_5.06142,825,136 - 142,825,341UniSTSRnor5.0
RGSC_v3.46134,120,981 - 134,121,186UniSTSRGSC3.4
Celera6126,045,106 - 126,045,311UniSTS
Cytogenetic Map6q32UniSTS
AW532640  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26128,510,388 - 128,510,529 (+)MAPPERmRatBN7.2
Rnor_6.06133,677,515 - 133,677,655NCBIRnor6.0
Rnor_5.06142,839,599 - 142,839,739UniSTSRnor5.0
RGSC_v3.46134,135,911 - 134,136,051UniSTSRGSC3.4
Celera6126,059,506 - 126,059,646UniSTS
RH 3.4 Map6787.1UniSTS
Cytogenetic Map6q32UniSTS
PMC133956P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26128,523,722 - 128,523,984 (+)MAPPERmRatBN7.2
Rnor_6.06133,690,843 - 133,691,104NCBIRnor6.0
Rnor_5.06142,852,927 - 142,853,188UniSTSRnor5.0
RGSC_v3.46134,149,239 - 134,149,500UniSTSRGSC3.4
Celera6126,072,834 - 126,073,095UniSTS
Cytogenetic Map6q32UniSTS
D12Bwg1266e  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26128,509,761 - 128,510,325 (+)MAPPERmRatBN7.2
Rnor_6.06133,676,888 - 133,677,451NCBIRnor6.0
Rnor_5.06142,838,972 - 142,839,535UniSTSRnor5.0
RGSC_v3.46134,135,284 - 134,135,847UniSTSRGSC3.4
Celera6126,058,879 - 126,059,442UniSTS
Cytogenetic Map6q32UniSTS


Expression


Sequence


RefSeq Acc Id: NR_131064
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86134,274,056 - 134,306,249 (+)NCBI
mRatBN7.26128,491,808 - 128,524,010 (+)NCBI
Rnor_6.06133,658,937 - 133,691,130 (+)NCBI
Celera6126,041,041 - 126,073,121 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-36262 BioCyc
NCBI Gene 500717 ENTREZGENE
PhenoGen Meg3 PhenoGen
RNAcentral URS0000CD0657 RNACentral
  URS00021EDA4F RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-13 Meg3  maternally expressed 3  RGD1566401  similar to GTL2, imprinted maternally expressed untranslated  Name and Symbol changed 629549 APPROVED
2008-04-30 RGD1566401  similar to GTL2, imprinted maternally expressed untranslated   RGD1566401_predicted  similar to GTL2, imprinted maternally expressed untranslated (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1566401_predicted  similar to GTL2, imprinted maternally expressed untranslated (predicted)  LOC500717  similar to GTL2, imprinted maternally expressed untranslated  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500717  similar to GTL2, imprinted maternally expressed untranslated      Symbol and Name status set to provisional 70820 PROVISIONAL