Rps8l1 (ribosomal protein S8 like 1) - Rat Genome Database

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Gene: Rps8l1 (ribosomal protein S8 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps8l1 (Ensembl: RGD1566369)
Name: ribosomal protein S8 like 1 (Ensembl:similar to ribosomal protein S8)
RGD ID: 1566369
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex; INTERACTS WITH 3-chloropropane-1,2-diol; rotenone; trichloroethene.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S8-like; LOC291353; RGD1566369; similar to ribosomal protein S8; small ribosomal subunit protein eS8-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81788,667,583 - 89,663,263 (-)NCBIGRCr8
mRatBN7.21783,759,360 - 83,760,027 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1783,759,369 - 83,760,019 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01788,139,926 - 88,156,732 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1788,139,962 - 88,140,588 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01789,827,184 - 89,827,848 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41795,246,880 - 95,247,542 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1783,011,999 - 83,028,818 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rps8l1
9 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:92
Count of miRNA genes:83
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000006662
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 1 1 3 4 3
Below cutoff 2 27 36 26 15 26 5 7 34 19 24 7 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000006662   ⟹   ENSRNOP00000006662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1783,759,369 - 83,760,019 (-)Ensembl
Rnor_6.0 Ensembl1788,139,962 - 88,140,588 (-)Ensembl
RefSeq Acc Id: XM_039096347   ⟹   XP_038952275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,667,583 - 89,663,263 (-)NCBI
mRatBN7.21783,759,360 - 83,760,027 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038952275 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000006662
  ENSRNOP00000006662.4
  ENSRNOP00000074753.2
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000006662   ⟸   ENSRNOT00000006662
RefSeq Acc Id: XP_038952275   ⟸   XM_039096347
- UniProtKB: D3ZIE1 (UniProtKB/TrEMBL),   A0A8L2R9H0 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZIE1-F1-model_v2 AlphaFold D3ZIE1 1-208 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566369 AgrOrtholog
BioCyc Gene G2FUF-8499 BioCyc
Ensembl Genes ENSRNOG00000005017 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000054626 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006662.7 UniProtKB/TrEMBL
  ENSRNOT00000081747.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.168.20 UniProtKB/TrEMBL
  3.10.290.70 UniProtKB/TrEMBL
InterPro Ribosomal_protein_S8e_euk UniProtKB/TrEMBL
  Ribosomal_S8e UniProtKB/TrEMBL
  Ribosomal_S8e/biogenesis_NSA2 UniProtKB/TrEMBL
  Ribosomal_S8e_CS UniProtKB/TrEMBL
NCBI Gene 291353 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S8 UniProtKB/TrEMBL
  PTHR10394 UniProtKB/TrEMBL
Pfam Ribosomal_S8e UniProtKB/TrEMBL
PhenoGen Rps8l1 PhenoGen
PROSITE RIBOSOMAL_S8E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005017 RatGTEx
  ENSRNOG00000054626 RatGTEx
UniProt A0A8L2R9H0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZIE1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rps8l1  ribosomal protein S8 like 1  RGD1566369  similar to ribosomal protein S8  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1566369  similar to ribosomal protein S8   RGD1566369_predicted  similar to ribosomal protein S8 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1566369_predicted  similar to ribosomal protein S8 (predicted)  LOC291353  similar to ribosomal protein S8  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC291353  similar to ribosomal protein S8      Symbol and Name status set to provisional 70820 PROVISIONAL