RGD1566326 (similar to ribosomal protein L21)

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Keyword

Gene: RGD1566326 (similar to ribosomal protein L21) Rattus norvegicus

Symbol:

RGD1566326

Name:

similar to ribosomal protein L21

Description:

ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN ribosome (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

LOC295941; RGD1566326_predicted; similar to ribosomal protein L21; similar to ribosomal protein L21 (predicted)

Latest Assembly:

RGSC Genome Assembly v3.4

Position:

Map	Chr	Position	Strand	Source
Rat Cytogenetic Map	3	q31		NCBI
RGSC Genome Assembly v5.0	3	92,243,204 - 92,243,686	+	NCBI
RGSC Genome Assembly v3.4	3	81,047,253 - 81,047,735	+	NCBI
Rat Celera Assembly	3	81,592,211 - 81,592,693	+	NCBI

Model

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Annotation (Toggle Detail/Summary View)

Gene Ontology Annotations

References - curated

Genomics

QTLs in Region (RGSC Genome Assembly v3.4)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631200	Cm25	Cardiac mass QTL 25	4.8	.0001	Cardiac mass	left ventricle	3	58882977	87981062	Rat
1331777	Bw24	Body weight QTL 24	3.503		Body weight		3	36556706	87981257	Rat
1354604	Bw36	Body weight QTL 36	2.9		Body weight		3	30253942	103304908	Rat
731180	Bp152	Blood pressure QTL 152		.03	Blood pressure		3	51161661	90573782	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	.038	Gland mass	pituitary	3	50522717	88648420	Rat
631665	Bw8	Body weight QTL 8	5.5		Body weight		3	47722628	119673738	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		Joint/bone inflammation	type II collagen induced	3	26674018	97524000	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		Gland mass	thymus	3	47722800	115996144	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		Gland mass	pituitary	3	44551542	110215186	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		Anxiety response	open field inner locomotion	3	36264666	81264666	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		Liver tumor resistance	nodule number	3	25775548	118863223	Rat
1300111	Rf12	Renal function QTL 12	3.78		Renal function	salt-loaded renal blood flow	3	58764506	121619110	Rat
1300178	Hrtrt4	Heart rate QTL 4	3.74		Heart rate	salt-loaded	3	41054012	89859652	Rat
1331795	Rf30	Renal function QTL 30	3.708		Renal function	urine potassium concentration	3	36556706	87981257	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		Kidney mass	right kidney mass	3	39052756	103304908	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		Blood pressure	mean arterial	3	10267741	121619110	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		Blood pressure	mean arterial	3	10267741	121619110	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	.000014	Heart rate	salt-loaded	3	6662627	88648585	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	.0006	Epididymal fat weight		3	50522618	116023640	Rat
1581568	Rf53	Renal function QTL 53			Renal function	urine protein level	3	53876762	163443738	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	.0008	Kidney mass		3	62558027	116023640	Rat
1582210	Bw71	Body weight QTL 71	3.3	.0012	Body weight		3	62558027	116023640	Rat
1582218	Bw74	Body weight QTL 74	3.9	.0021	Body weight		3	50522618	116023640	Rat
1582238	Bw68	Body weight QTL 68	3.2	.0064	Body weight		3	50522618	116023640	Rat
1582252	Sual1	Serum uric acid level QTL 1	3.4	.0123	Serum uric acid level		3	56359980	101359980	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		Hypothalamic-pituitary-adrenal axis	corticosterone post-stress	3	35237920	134686096	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	.05	Cardiac mass	left ventricle	3	41054012	121619110	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	.0335	Renal function	urine protein level	3	76620970	148642985	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		Lipid level	cholesterol level	3	1	90573782	Rat
2301970	Bw81	Body weight QTL 81	5.19		Body weight		3	39052756	158038027	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			Gland mass	thymus	3	44551252	149496698	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		Gland mass	pituitary	3	44551542	110215186	Rat
2301414	Kidm37	Kidney mass QTL 37		.001	Kidney mass		3	68816911	121619110	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		Cardiac mass	left ventricle	3	39052756	158038027	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	.001	Glucose level		3	79283621	114574752	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		Mammary tumor susceptibility	estradiol-induced	3	41054012	171063335	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		.21	Aerobic running capacity	best distance run to exhaustion	3	73863223	118863223	Rat

Sequence

Nucleotide Sequences

Protein Sequences

Strain Variation

Strain Sequence Variants

ACI/Eur (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

ACI/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN-Lx (ICL)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Imperial College London (Dr Timothy Aitman)
Platform:	SOLID
Secondary Analysis:	BWA, GATK, Samtools
Breeder:	Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information:	MC-A654-5QB00

BN-Lx (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN/NHsdMcwi (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN/SsN (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

Buf/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

COP/Crl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) Univiersity of Wisconsin (Jim Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5
Breeder:	Charles River
Grant Information:	NIH (CA77876)

F344/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

FHH/EurMcwi (MDC)

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Sequenced By:	Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5

LE/Stm (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Dr. Tadao Serikawa, Kyoto Japan.
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

M520/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

MR/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SHR/Olalpcv (ICL)

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Sequenced By:	Imperial College London (Dr Timothy Aitman) University of British Columbia (Dr. Steven Jones)
Platform:	Illumina Hi-seq 2000 and GAII
Secondary Analysis:	BWA, GATK
Breeder:	Institute of Physiology, Academy of Sciences of the Czech Republic, Prague
Grant Information:	LSHG-CT-2005-019015, HEALTH-F4-2010-241504

SHR/Olalpcv (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Imperial College London (Dr Timothy Aitman)
Platform:	Illumina
Secondary Analysis:	GATK
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SHRSP/Gcrc (MDC)

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Sequenced By:	Max Delbruch Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	University of Glasgow, Anna Dominiczak
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Breeder:	Harlan

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Grant Information:	R01 HL089930

SS/JrHsdMcwi (MDC)

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Sequenced By:	Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

WKY/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

WN/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

Additional Information

External Database Links

Nomenclature History

More on RGD1566326
	Entrez Gene
	Ensembl Gene
	Genome Browser
	NCBI Map Viewer
	Vista
	Vista + UCSC

RGD Object Information
RGD ID:	1566326
Created:	2006-02-09
Species:	Rattus norvegicus
Last Modified:	2013-05-28
Status:	ACTIVE