Ddx21-ps11 (DExD-box helicase 21, pseudogene 11) - Rat Genome Database

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Gene: Ddx21-ps11 (DExD-box helicase 21, pseudogene 11) Rattus norvegicus
Analyze
Symbol: Ddx21-ps11
Name: DExD-box helicase 21, pseudogene 11
RGD ID: 1566251
Description: INTERACTS WITH indole-3-methanol
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC102556075; LOC299668; putative sperm motility kinase W; RGD1566251; similar to hypothetical protein 4930509O22; uncharacterized LOC102556075
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8719,077,440 - 19,098,647 (-)NCBIGRCr8
mRatBN7.2716,170,788 - 16,192,428 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0720,461,918 - 20,480,449 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0720,625,769 - 20,644,709 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4717,436,435 - 17,452,062 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Ddx21-ps11
24 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:324
Count of miRNA genes:176
Interacting mature miRNAs:199
Transcripts:ENSRNOT00000046378
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_017595175   ⟹   XP_017450664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0720,461,919 - 20,479,662 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595176   ⟹   XP_017450665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0720,461,919 - 20,479,662 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595177   ⟹   XP_017450666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0720,461,919 - 20,479,662 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595178   ⟹   XP_017450667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0720,461,919 - 20,479,662 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595179   ⟹   XP_017450668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0720,461,919 - 20,479,662 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595180   ⟹   XP_017450669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0720,461,918 - 20,479,662 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595181   ⟹   XP_017450670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0720,461,919 - 20,479,662 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595182   ⟹   XP_017450671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0720,461,919 - 20,479,662 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595183   ⟹   XP_017450672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0720,461,919 - 20,479,662 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595184   ⟹   XP_017450673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0720,461,919 - 20,479,662 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595185   ⟹   XP_017450674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0720,461,919 - 20,479,662 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595186   ⟹   XP_017450675
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0720,461,919 - 20,479,662 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595187   ⟹   XP_017450676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0720,461,919 - 20,479,662 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001838760
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0720,470,098 - 20,480,449 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-34668 BioCyc
NCBI Gene 299668 ENTREZGENE
PhenoGen Ddx21-ps11 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Ddx21-ps11  DExD-box helicase 21, pseudogene 11  RGD1566251  similar to hypothetical protein 4930509O22  Symbol and Name Changed 1299863 APPROVED
2021-03-09 RGD1566251  similar to hypothetical protein 4930509O22  LOC102556075  uncharacterized LOC102556075  Data merged from RGD:7634670 737654 PROVISIONAL
2013-12-18 LOC102556075  uncharacterized LOC102556075      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1566251  similar to hypothetical protein 4930509O22   RGD1566251_predicted  similar to hypothetical protein 4930509O22 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1566251_predicted  similar to hypothetical protein 4930509O22 (predicted)  LOC299668  similar to hypothetical protein 4930509O22  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC299668  similar to hypothetical protein 4930509O22      Symbol and Name status set to provisional 70820 PROVISIONAL