Rassf6 (Ras association domain family member 6)

Gene: Rassf6 (Ras association domain family member 6) Rattus norvegicus

Analyze

Symbol:

Rassf6

Name:

Ras association domain family member 6

RGD ID:

1566082

Description:

Predicted to be involved in regulation of apoptotic process and signal transduction. Predicted to act upstream of or within positive regulation of apoptotic process. Orthologous to human RASSF6 (Ras association domain family member 6); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

MGC114410; Ras association (RalGDS/AF-6) domain family member 6; ras association domain-containing protein 6; similar to Ras association (RalGDS/AF-6) domain family 6

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	17,717,505 - 17,757,507 (+)	NCBI		GRCr8
mRatBN7.2	14	17,433,328 - 17,473,565 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	17,442,789 - 17,473,330 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	17,433,546 - 17,473,289 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	18,752,468 - 18,792,218 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	17,444,891 - 17,484,198 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	18,983,852 - 19,023,921 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	18,983,853 - 19,025,971 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	18,892,843 - 18,932,798 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	18,947,511 - 18,987,703 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	16,808,441 - 16,848,145 (+)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

aflatoxin B1 (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

cadmium sulfate (ISO)

CGP 52608 (ISO)

chloroprene (ISO)

cobalt dichloride (EXP)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

diethylstilbestrol (EXP)

dorsomorphin (ISO)

finasteride (EXP)

flutamide (EXP)

genistein (ISO)

glafenine (EXP)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

nickel atom (ISO)

O-methyleugenol (ISO)

oxaliplatin (EXP)

panobinostat (ISO)

paracetamol (ISO)

pentachlorophenol (ISO)

perfluorooctanoic acid (ISO)

phenylmercury acetate (ISO)

potassium dichromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sulindac (EXP)

tamibarotene (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

topotecan (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

positive regulation of apoptotic process (ISO)

regulation of apoptotic process (ISO)

signal transduction (IBA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:17404571	PMID:24003224

Genomics

Comparative Map Data

Rassf6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	17,717,505 - 17,757,507 (+)	NCBI		GRCr8
mRatBN7.2	14	17,433,328 - 17,473,565 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	17,442,789 - 17,473,330 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	17,433,546 - 17,473,289 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	18,752,468 - 18,792,218 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	17,444,891 - 17,484,198 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	18,983,852 - 19,023,921 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	18,983,853 - 19,025,971 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	18,892,843 - 18,932,798 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	18,947,511 - 18,987,703 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	16,808,441 - 16,848,145 (+)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

RASSF6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	73,571,550 - 73,620,631 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	73,571,550 - 73,620,631 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	74,437,267 - 74,486,348 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	74,657,726 - 74,705,204 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	71,798,579 - 71,846,099 (-)	NCBI		Celera
Cytogenetic Map	4	q13.3	NCBI
HuRef	4	70,248,608 - 70,297,731 (-)	NCBI		HuRef
CHM1_1	4	74,473,102 - 74,522,188 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	76,915,192 - 76,964,307 (-)	NCBI		T2T-CHM13v2.0

Rassf6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	90,750,933 - 90,788,594 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	90,750,935 - 90,788,516 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	90,603,076 - 90,640,734 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	90,603,076 - 90,640,657 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	91,032,102 - 91,069,513 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	91,678,286 - 91,715,667 (-)	NCBI		MGSCv36	mm8
Celera	5	88,754,754 - 88,792,170 (-)	NCBI		Celera
Cytogenetic Map	5	E1	NCBI
cM Map	5	44.78	NCBI

Rassf6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955657	49,115 - 59,237 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955657	49,115 - 59,237 (-)	NCBI	ChiLan1.0	ChiLan1.0

RASSF6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	56,443,998 - 56,492,909 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	56,633,021 - 56,681,918 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	50,575,973 - 50,624,901 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	56,408,103 - 56,457,055 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	56,408,042 - 56,457,055 (+)	Ensembl	panpan1.1		panPan2

RASSF6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	62,299,717 - 62,344,698 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	62,300,876 - 62,345,372 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	61,969,307 - 62,014,186 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	63,109,864 - 63,154,572 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	63,111,015 - 63,154,670 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	62,720,894 - 62,765,418 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	62,210,231 - 62,255,168 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	63,350,110 - 63,395,236 (-)	NCBI		UU_Cfam_GSD_1.0

Rassf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	13,414,677 - 13,456,123 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936598	1,875,618 - 1,905,202 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936598	1,866,732 - 1,907,949 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RASSF6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	69,771,934 - 69,831,364 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	69,773,526 - 69,832,158 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	73,873,634 - 73,931,317 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RASSF6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	22,036,965 - 22,086,414 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	22,040,648 - 22,085,148 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666084	710,796 - 759,242 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rassf6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	33,872,745 - 33,899,516 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624735	33,850,506 - 33,900,227 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rassf6
290 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	85
Count of miRNA genes:	74
Interacting mature miRNAs:	80
Transcripts:	ENSRNOT00000003836
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300159	Bmd61	Bone mineral density QTL 61	5.3	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	14	1	26541967	Rat
2300183	Bmd60	Bone mineral density QTL 60	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	14	1	26541967	Rat
619619	Rf4	Renal disease susceptibility QTL 4	4.1	0.002	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	14	1	32754612	Rat
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41131407	Rat
2293089	Iddm31	Insulin dependent diabetes mellitus QTL 31	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	3813074	18274691	Rat
2293089	Iddm31	Insulin dependent diabetes mellitus QTL 31	4.7		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	14	3813074	18274691	Rat
1300114	Srn2	Serum renin concentration QTL 2	3.27		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	14	3813074	21217635	Rat
70195	Mcs8	Mammary carcinoma susceptibility QTL 8	4.28		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	14	3813074	24531477	Rat
1331740	Bw26	Body weight QTL 26	3.028		body mass (VT:0001259)	body weight (CMO:0000012)	14	3813074	30767156	Rat
1581500	Renag1	Renal agenesis QTL 1			kidney development trait (VT:0000527)	percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)	14	8170668	68298175	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8267090	53267090	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8267090	53267090	Rat
731183	Pia20	Pristane induced arthritis QTL 20	3.55		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	9088978	39057237	Rat
2302277	Gluco38	Glucose level QTL 38	5.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	28035204	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
631212	Bw5	Body weight QTL5	5.43		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	14	11030812	30320092	Rat
1300140	Srn3	Serum renin concentration QTL 3	3.19		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	14	14875168	30883947	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2		11	11		11				16
Low	1	32	46	30	19	30	8	10	68	19	38	11	8
Below cutoff		11						1	6		2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001428978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001428979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC097375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000003836 ⟹ ENSRNOP00000003836

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	17,442,789 - 17,473,330 (+)	Ensembl
Rnor_6.0 Ensembl	14	18,983,853 - 19,025,971 (+)	Ensembl

RefSeq Acc Id:

NM_001025671 ⟹ NP_001020842

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	17,717,767 - 17,757,507 (+)	NCBI
mRatBN7.2	14	17,433,590 - 17,473,333 (+)	NCBI
Rnor_6.0	14	18,984,096 - 19,023,706 (+)	NCBI
Rnor_5.0	14	18,892,843 - 18,932,798 (+)	NCBI
RGSC_v3.4	14	18,947,511 - 18,987,703 (+)	RGD
Celera	14	16,808,441 - 16,848,145 (+)	RGD

Sequence:

show sequence

GACAATAGCAGGGCATCCTCAGATCGTCTTGGGAAGGGACCAAGGATGACAACGATGGATCACC
GGTTCCCTTCTAGGATCTTTGTCAACGAGAGGACATCCATAACCAGAGAACAACTCAATTCTTT
ACTGGAGACTTATAATGTTTTCTATGAAAACCAGAAAAATCTGCATATATTGTATGGACAGACC
GAAGACGGACAGCTGATTGTTGAAGGGATGCTGGACATTTTCTGGGGAGTCAAACGACCCATAC
AGCTGAAAATACAAGATGAGAAGCAAATCTCTTCCTTTGATCTGTTGAAGTCACCGGAAACCTT
TTCCAGCAAAGGGAGGATGACTCGTTGGGGAGAATTCGATGACCTTTACCGTATTAGTGAGATG
GACAAGACCCAAGCTCTAGCCCCTGAAGCCAGGCATACCCCGGAAGACTATTTATCTTGCTACA
GCGTCCTGAAGCAATGTGCAGATGAAGAGCCCGAGTCGCCATTGCTCTACAGGACCGTGAGTGA
AGCAGCTTTGGTGAGGAAAAGAATGAGGGCCCCAGAGATGTACAGAAAAGACAGAATGGGGACG
CTAGCGAAGCACAGAGCCTCTATCAATGGACACGTCTATGACCATGAGACGTCCATCTTCACCC
CGACCTTCGGATCAGAGACTAAGGTCAGAGCCAATAGTATTATGAAAACCGAAGAAGTAATAAA
GCAGCTTCTCCAAAAATTTAAGATCGAGAATAGCCCTCGGGATTTCGCTCTTTACATTATTTTT
GGGACAGGAGAGAAGAGAAAGCTAAAGAAGACCGATGTCCCACTGCTGCAGAGGCTAATACAAG
GGCCATCCAAAAGCAACGCTCGGATCTTCCTCATGGATAAAGACGCAGAAGAAATTAGCAGTGA
TGTGGCTCCGTACATTAATTTTCACTTTTCTTTCTTGAAATCCATCCTTCAAAGATTAGATGAA
GAAGAGAAAATGGAGATTGAGAGAATTATGGCAAAGTTCAATACCGAAAGAGCCTTTATACTGA
AGTGTCTTCAGAGTAAACGGGCAGCAAAAACGGAGACCACAGTCTAGAAGCGGCAGCTCCTGCT
TGTAAACCCTCAACTGAGTCAGAGGGGGCGCTGCTGAACCGGTGTTCGGTCTGCTCTGCGTCCT
AATATGCAGGACCTTGAAGCTTTGGGAAGCTGAAGGCCAGGCAGTTTGCTTCCTCTTTGAAATG
CTGAGGTGGGCTGCGGTTCAGAGTTGGACGAAAGCAAGATGGGACTTCATCTGGGTAACTGCAG
GAAGCCTGCACACTGCCGCTTTCCAAATATCATCCATAGCGAATTCTTGACTGAGCTCGGACTG
AAGTGGCCTCAGTCTTGTCACATGGTTTAAACTTGTTTTATCTTGCACTCTTGAAAGAGCATAG
ACCCTCGATGGCTCATAGACGATGGGAAGCAAACATCTCCAGTTCTTGTTGTAAACCATGTTCT
GAAGCCATCAGGGATCTGAACTGACCGTGTTTCGCAGCTGTGGAAAGTTCGAACATTTTCATAC
GATTTAGAAGTAGATGCGCGAGGGCTGACGGTTGTTAACTCTGTAGTATCAGAGTTACCTGAAT
TTTTACAATAAAATGGTTTTGGACTTTGTAAAGAAACCTAGACTCTAGGCTGGAGAGAAGACTA
AGTGGTTCAAAGCATTGACTATATGAACCTATATGACATATAGGTTCAGTTCCCAGCACCTATA
GGGCATCTCACAACCGTCTGTAGCTCCCTTCCTGGAGGATCTGATACCCACCTATGTGGGCATT
GCAAGCACATGGTGCACAGACACAGGCAGGCAAAACAGCTATATATGTAAAAAATAAACAAATA
TTTTTAAAAGAGAAAACCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006250745 ⟹ XP_006250807

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	17,717,505 - 17,757,507 (+)	NCBI
mRatBN7.2	14	17,433,328 - 17,473,326 (+)	NCBI
Rnor_6.0	14	18,983,853 - 19,023,921 (+)	NCBI
Rnor_5.0	14	18,892,843 - 18,932,798 (+)	NCBI

Sequence:

show sequence

TGCGATGGGCAACCTAGTAATAATTAACTGCCGCTGGGGCTGTGAAACTGCCGAGAGCAGCGCT
GTGGGGGCAGCCATGTGCCCTCCACCCTGCCTGCCTCAGCTCGGAGCAGGTGAGTGATCAGGGC
ATCCTCAGATCGTCTTGGGAAGGGACCAAGGATGACAACGATGGATCACCGGTTCCCTTCTAGG
ATCTTTGTCAACGAGAGGACATCCATAACCAGAGAACAACTCAATTCTTTACTGGAGACTTATA
ATGTTTTCTATGAAAACCAGAAAAATCTGCATATATTGTATGGACAGACCGAAGACGGACAGCT
GATTGTTGAAGGGATGCTGGACATTTTCTGGGGAGTCAAACGACCCATACAGCTGAAAATACAA
GATGAGAAGCAAATCTCTTCCTTTGATCTGTTGAAGTCACCGGAAACCTTTTCCAGCAAAGGGA
GGATGACTCGTTGGGGAGAATTCGATGACCTTTACCGTATTAGTGAGATGGACAAGACCCAAGC
TCTAGCCCCTGAAGCCAGGCATACCCCGGAAGACTATTTATCTTGCTACAGCGTCCTGAAGCAA
TGTGCAGATGAAGAGCCCGAGTCGCCATTGCTCTACAGGACCGTGAGTGAAGCAGCTTTGGTGA
GGAAAAGAATGAGGGCCCCAGAGATGTACAGAAAAGACAGAATGGGGACGCTAGCGAAGCACAG
AGCCTCTATCAATGGACACGTCTATGACCATGAGACGTCCATCTTCACCCCGACCTTCGGATCA
GAGACTAAGGTCAGAGCCAATAGTATTATGAAAACCGAAGAAGTAATAAAGCAGCTTCTCCAAA
AATTTAAGATCGAGAATAGCCCTCGGGATTTCGCTCTTTACATTATTTTTGGGACAGGAGAGAA
GAGAAAGCTAAAGAAGACCGATGTCCCACTGCTGCAGAGGCTAATACAAGGGCCATCCAAAAGC
AACGCTCGGATCTTCCTCATGGATAAAGACGCAGAAGAAATTAGCAGTGATGTGGCTCCGTACA
TTAATTTTCACTTTTCTTTCTTGAAATCCATCCTTCAAAGATTAGATGAAGAAGAGAAAATGGA
GATTGAGAGAATTATGGCAAAGTTCAATACCGAAAGAGCCTTTATACTGAAGTGTCTTCAGAGT
AAACGGGCAGCAAAAACGGAGACCACAGTCTAGAAGCGGCAGCTCCTGCTTGTAAACCCTCAAC
TGAGTCAGAGGGGGCGCTGCTGAACCGGTGTTCGGTCTGCTCTGCGTCCTAATATGCAGGACCT
TGAAGCTTTGGGAAGCTGAAGGCCAGGCAGTTTGCTTCCTCTTTGAAATGCTGAGGTGGGCTGC
GGTTCAGAGTTGGACGAAAGCAAGATGGGACTTCATCTGGGTAACTGCAGGAAGCCTGCACACT
GCCGCTTTCCAAATATCATCCATAGCGAATTCTTGACTGAGCTCGGACTGAAGTGGCCTCAGTC
TTGTCACATGGTTTAAACTTGTTTTATCTTGCACTCTTGAAAGAGCATAGACCCTCGATGGCTC
ATAGACGATGGGAAGCAAACATCTCCAGTTCTTGTTGTAAACCATGTTCTGAAGCCATCAGGGA
TCTGAACTGACCGTGTTTCGCAGCTGTGGAAAGTTCGAACATTTTCATACGATTTAGAAGTAGA
TGCGCGAGGGCTGACGGTTGTTAACTCTGTAGTATCAGAGTTACCTGAATTTTTACAATAAAAT
GGTTTTGGACTTTGTAAAGAAACCTAGACTCTAGGCTGGAGAGAAGACTAAGTGGTTCAAAGCA
TTGACTATATGAACCTATATGACATATAGGTTCAGTTCCCAGCACCTATAGGGCATCTCACAAC
CGTCTGTAGCTCCCTTCCTGGAGGATCTGATACCCACCTATGTGGGCATTGCAAGCACATGGTG
CACAGACACAGGCAGGCAAAACAGCTATATATGTAAAAAATAAACAAATATTTTTAAAAGAGAA
AACCCTAAATTCTGATTGTCCAGGCCCTTCATTTGTCACCACACCCTCCTGTGCTACTAAAGAC
TTCTAAGCTGCTTTAAATGTCTTTAAAAGTTGGTTGTAGGGGTTGGGGATTTAGCTCAGTGGTA
GAGCGCTTGCCTAGCTCTGGAAAAAAAAGTCTGTTGTATTCATTAGCTTTCTTTACCCTTGTAA
ACAAATACACACCACCAACATAAAATATACTG

hide sequence

RefSeq Acc Id:

XM_006250747 ⟹ XP_006250809

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	17,717,517 - 17,757,507 (+)	NCBI
mRatBN7.2	14	17,433,340 - 17,473,326 (+)	NCBI
Rnor_6.0	14	18,983,852 - 19,023,921 (+)	NCBI
Rnor_5.0	14	18,892,843 - 18,932,798 (+)	NCBI

Sequence:

show sequence

CTGCGATGGGCAACCTAGTAATAATTAACTGCCGCTGGGGCTGTGAAACTGCCGAGAGCAGCGC
TGTGGGGGCAGCCATGTGCCCTCCACCCTGCCTGCCTCAGCTCGGAGCAGGGCATCCTCAGATC
GTCTTGGGAAGGGACCAAGGATGACAACGATGGATCACCGGTTCCCTTCTAGGATCTTTGTCAA
CGAGAGGACATCCATAACCAGAGAACAACTCAATTCTTTACTGGAGACTTATAATGTTTTCTAT
GAAAACCAGAAAAATCTGCATATATTGTATGGACAGACCGAAGACGGACAGCTGATTGTTGAAG
GGATGCTGGACATTTTCTGGGGAGTCAAACGACCCATACAGCTGAAAATACAAGATGAGAAGCA
AATCTCTTCCTTTGATCTGTTGAAGTCACCGGAAACCTTTTCCAGCAAAGGGAGGATGACTCGT
TGGGGAGAATTCGATGACCTTTACCGTATTAGTGAGATGGACAAGACCCAAGCTCTAGCCCCTG
AAGCCAGGCATACCCCGGAAGACTATTTATCTTGCTACAGCGTCCTGAAGCAATGTGCAGATGA
AGAGCCCGAGTCGCCATTGCTCTACAGGACCGTGAGTGAAGCAGCTTTGGTGAGGAAAAGAATG
AGGGCCCCAGAGATGTACAGAAAAGACAGAATGGGGACGCTAGCGAAGCACAGAGCCTCTATCA
ATGGACACGTCTATGACCATGAGACGTCCATCTTCACCCCGACCTTCGGATCAGAGACTAAGGT
CAGAGCCAATAGTATTATGAAAACCGAAGAAGTAATAAAGCAGCTTCTCCAAAAATTTAAGATC
GAGAATAGCCCTCGGGATTTCGCTCTTTACATTATTTTTGGGACAGGAGAGAAGAGAAAGCTAA
AGAAGACCGATGTCCCACTGCTGCAGAGGCTAATACAAGGGCCATCCAAAAGCAACGCTCGGAT
CTTCCTCATGGATAAAGACGCAGAAGAAATTAGCAGTGATGTGGCTCCGTACATTAATTTTCAC
TTTTCTTTCTTGAAATCCATCCTTCAAAGATTAGATGAAGAAGAGAAAATGGAGATTGAGAGAA
TTATGGCAAAGTTCAATACCGAAAGAGCCTTTATACTGAAGTGTCTTCAGAGTAAACGGGCAGC
AAAAACGGAGACCACAGTCTAGAAGCGGCAGCTCCTGCTTGTAAACCCTCAACTGAGTCAGAGG
GGGCGCTGCTGAACCGGTGTTCGGTCTGCTCTGCGTCCTAATATGCAGGACCTTGAAGCTTTGG
GAAGCTGAAGGCCAGGCAGTTTGCTTCCTCTTTGAAATGCTGAGGTGGGCTGCGGTTCAGAGTT
GGACGAAAGCAAGATGGGACTTCATCTGGGTAACTGCAGGAAGCCTGCACACTGCCGCTTTCCA
AATATCATCCATAGCGAATTCTTGACTGAGCTCGGACTGAAGTGGCCTCAGTCTTGTCACATGG
TTTAAACTTGTTTTATCTTGCACTCTTGAAAGAGCATAGACCCTCGATGGCTCATAGACGATGG
GAAGCAAACATCTCCAGTTCTTGTTGTAAACCATGTTCTGAAGCCATCAGGGATCTGAACTGAC
CGTGTTTCGCAGCTGTGGAAAGTTCGAACATTTTCATACGATTTAGAAGTAGATGCGCGAGGGC
TGACGGTTGTTAACTCTGTAGTATCAGAGTTACCTGAATTTTTACAATAAAATGGTTTTGGACT
TTGTAAAGAAACCTAGACTCTAGGCTGGAGAGAAGACTAAGTGGTTCAAAGCATTGACTATATG
AACCTATATGACATATAGGTTCAGTTCCCAGCACCTATAGGGCATCTCACAACCGTCTGTAGCT
CCCTTCCTGGAGGATCTGATACCCACCTATGTGGGCATTGCAAGCACATGGTGCACAGACACAG
GCAGGCAAAACAGCTATATATGTAAAAAATAAACAAATATTTTTAAAAGAGAAAACCCTAAATT
CTGATTGTCCAGGCCCTTCATTTGTCACCACACCCTCCTGTGCTACTAAAGACTTCTAAGCTGC
TTTAAATGTCTTTAAAAGTTGGTTGTAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCC
TAGCTCTGGAAAAAAAAGTCTGTTGTATTCATTAGCTTTCTTTACCCTTGTAAACAAATACACA
CCACCAACATAAAATATACTG

hide sequence

RefSeq Acc Id:

XM_008770036 ⟹ XP_008768258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	17,720,572 - 17,757,507 (+)	NCBI
mRatBN7.2	14	17,442,116 - 17,473,565 (+)	NCBI
Rnor_6.0	14	18,992,583 - 19,023,921 (+)	NCBI

Sequence:

show sequence

CCTCCTCTTTTTTTCCTTTCTCTTCTGGTACCCCTGGGAATTAGATGTATAATGTCTTCCATTC
TCCGTACCCTACCAAAACAGTCTGCCATGAAAGTAAAAAATAGCCCATCTAGGTTCTATTTGTT
AAGAAAATTGATTTTTTTTTCCAGCCCAGCTTTTGAATCTGAATACAGAGCCTGCGATTCTTCA
GGCTCAGAGCAATGGGCATCCTCAGATCGTCTTGGGAAGGGACCAAGGATGACAACGATGGATC
ACCGGTTCCCTTCTAGGATCTTTGTCAACGAGAGGACATCCATAACCAGAGAACAACTCAATTC
TTTACTGGAGACTTATAATGTTTTCTATGAAAACCAGAAAAATCTGCATATATTGTATGGACAG
ACCGAAGACGGACAGCTGATTGTTGAAGGGATGCTGGACATTTTCTGGGGAGTCAAACGACCCA
TACAGCTGAAAATACAAGATGAGAAGCAAATCTCTTCCTTTGATCTGTTGAAGTCACCGGAAAC
CTTTTCCAGCAAAGGGAGGATGACTCGTTGGGGAGAATTCGATGACCTTTACCGTATTAGTGAG
ATGGACAAGACCCAAGCTCTAGCCCCTGAAGCCAGGCATACCCCGGAAGACTATTTATCTTGCT
ACAGCGTCCTGAAGCAATGTGCAGATGAAGAGCCCGAGTCGCCATTGCTCTACAGGACCGTGAG
TGAAGCAGCTTTGGTGAGGAAAAGAATGAGGGCCCCAGAGATGTACAGAAAAGACAGAATGGGG
ACGCTAGCGAAGCACAGAGCCTCTATCAATGGACACGTCTATGACCATGAGACGTCCATCTTCA
CCCCGACCTTCGGATCAGAGACTAAGGTCAGAGCCAATAGTATTATGAAAACCGAAGAAGTAAT
AAAGCAGCTTCTCCAAAAATTTAAGATCGAGAATAGCCCTCGGGATTTCGCTCTTTACATTATT
TTTGGGACAGGAGAGAAGAGAAAGCTAAAGAAGACCGATGTCCCACTGCTGCAGAGGCTAATAC
AAGGGCCATCCAAAAGCAACGCTCGGATCTTCCTCATGGATAAAGACGCAGAAGAAATTAGCAG
TGATGTGGCTCCGTACATTAATTTTCACTTTTCTTTCTTGAAATCCATCCTTCAAAGATTAGAT
GAAGAAGAGAAAATGGAGATTGAGAGAATTATGGCAAAGTTCAATACCGAAAGAGCCTTTATAC
TGAAGTGTCTTCAGAGTAAACGGGCAGCAAAAACGGAGACCACAGTCTAGAAGCGGCAGCTCCT
GCTTGTAAACCCTCAACTGAGTCAGAGGGGGCGCTGCTGAACCGGTGTTCGGTCTGCTCTGCGT
CCTAATATGCAGGACCTTGAAGCTTTGGGAAGCTGAAGGCCAGGCAGTTTGCTTCCTCTTTGAA
ATGCTGAGGTGGGCTGCGGTTCAGAGTTGGACGAAAGCAAGATGGGACTTCATCTGGGTAACTG
CAGGAAGCCTGCACACTGCCGCTTTCCAAATATCATCCATAGCGAATTCTTGACTGAGCTCGGA
CTGAAGTGGCCTCAGTCTTGTCACATGGTTTAAACTTGTTTTATCTTGCACTCTTGAAAGAGCA
TAGACCCTCGATGGCTCATAGACGATGGGAAGCAAACATCTCCAGTTCTTGTTGTAAACCATGT
TCTGAAGCCATCAGGGATCTGAACTGACCGTGTTTCGCAGCTGTGGAAAGTTCGAACATTTTCA
TACGATTTAGAAGTAGATGCGCGAGGGCTGACGGTTGTTAACTCTGTAGTATCAGAGTTACCTG
AATTTTTACAATAAAATGGTTTTGGACTTTGTAAAGAAACCTAGACTCTAGGCTGGAGAGAAGA
CTAAGTGGTTCAAAGCATTGACTATATGAACCTATATGACATATAGGTTCAGTTCCCAGCACCT
ATAGGGCATCTCACAACCGTCTGTAGCTCCCTTCCTGGAGGATCTGATACCCACCTATGTGGGC
ATTGCAAGCACATGGTGCACAGACACAGGCAGGCAAAACAGCTATATATGTAAAAAATAAACAA
ATATTTTTAAAAGAGAAAACCCTAAATTCTGATTGTCCAGGCCCTTCATTTGTCACCACACCCT
CCTGTGCTACTAAAGACTTCTAAGCTGCTTTAAATGTCTTTAAAAGTTGGTTGTAGGGGTTGGG
GATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCTCTGGAAAAAAAAGTCTGTTGTATTCATTAGC
TTTCTTTACCCTTGTAAACAAATACACACCACCAACATAAAATATACTG

hide sequence

RefSeq Acc Id:

XM_039091869 ⟹ XP_038947797

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	17,746,515 - 17,757,507 (+)	NCBI
mRatBN7.2	14	17,462,343 - 17,473,326 (+)	NCBI

RefSeq Acc Id:

XM_039091870 ⟹ XP_038947798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	17,720,527 - 17,751,815 (+)	NCBI
mRatBN7.2	14	17,442,113 - 17,467,641 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020842	(Get FASTA)	NCBI Sequence Viewer
	NP_001415907	(Get FASTA)	NCBI Sequence Viewer
	NP_001415908	(Get FASTA)	NCBI Sequence Viewer
	XP_006250807	(Get FASTA)	NCBI Sequence Viewer
	XP_006250809	(Get FASTA)	NCBI Sequence Viewer
	XP_008768258	(Get FASTA)	NCBI Sequence Viewer
	XP_038947797	(Get FASTA)	NCBI Sequence Viewer
	XP_038947798	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97375	(Get FASTA)	NCBI Sequence Viewer
	EDL88561	(Get FASTA)	NCBI Sequence Viewer
	EDL88562	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003836
	ENSRNOP00000003836.5
	ENSRNOP00055007701
	ENSRNOP00060026279
	ENSRNOP00065023340
GenBank Protein	Q4QR82	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020842 ⟸ NM_001025671

- UniProtKB:

Q4QR82 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MTTMDHRFPSRIFVNERTSITREQLNSLLETYNVFYENQKNLHILYGQTEDGQLIVEGMLDIFW
GVKRPIQLKIQDEKQISSFDLLKSPETFSSKGRMTRWGEFDDLYRISEMDKTQALAPEARHTPE
DYLSCYSVLKQCADEEPESPLLYRTVSEAALVRKRMRAPEMYRKDRMGTLAKHRASINGHVYDH
ETSIFTPTFGSETKVRANSIMKTEEVIKQLLQKFKIENSPRDFALYIIFGTGEKRKLKKTDVPL
LQRLIQGPSKSNARIFLMDKDAEEISSDVAPYINFHFSFLKSILQRLDEEEKMEIERIMAKFNT
ERAFILKCLQSKRAAKTETTV

hide sequence

RefSeq Acc Id:	XP_006250807 ⟸ XM_006250745
- Peptide Label:	isoform X2
- UniProtKB:	Q4QR82 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTTMDHRFPSRIFVNERTSITREQLNSLLETYNVFYENQKNLHILYGQTEDGQLIVEGMLDIFW GVKRPIQLKIQDEKQISSFDLLKSPETFSSKGRMTRWGEFDDLYRISEMDKTQALAPEARHTPE DYLSCYSVLKQCADEEPESPLLYRTVSEAALVRKRMRAPEMYRKDRMGTLAKHRASINGHVYDH ETSIFTPTFGSETKVRANSIMKTEEVIKQLLQKFKIENSPRDFALYIIFGTGEKRKLKKTDVPL LQRLIQGPSKSNARIFLMDKDAEEISSDVAPYINFHFSFLKSILQRLDEEEKMEIERIMAKFNT ERAFILKCLQSKRAAKTETTV hide sequence

RefSeq Acc Id:	XP_006250809 ⟸ XM_006250747
- Peptide Label:	isoform X2
- UniProtKB:	Q4QR82 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTTMDHRFPSRIFVNERTSITREQLNSLLETYNVFYENQKNLHILYGQTEDGQLIVEGMLDIFW GVKRPIQLKIQDEKQISSFDLLKSPETFSSKGRMTRWGEFDDLYRISEMDKTQALAPEARHTPE DYLSCYSVLKQCADEEPESPLLYRTVSEAALVRKRMRAPEMYRKDRMGTLAKHRASINGHVYDH ETSIFTPTFGSETKVRANSIMKTEEVIKQLLQKFKIENSPRDFALYIIFGTGEKRKLKKTDVPL LQRLIQGPSKSNARIFLMDKDAEEISSDVAPYINFHFSFLKSILQRLDEEEKMEIERIMAKFNT ERAFILKCLQSKRAAKTETTV hide sequence

RefSeq Acc Id:

XP_008768258 ⟸ XM_008770036

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSSILRTLPKQSAMKVKNSPSRFYLLRKLIFFSSPAFESEYRACDSSGSEQWASSDRLGKGPRM
TTMDHRFPSRIFVNERTSITREQLNSLLETYNVFYENQKNLHILYGQTEDGQLIVEGMLDIFWG
VKRPIQLKIQDEKQISSFDLLKSPETFSSKGRMTRWGEFDDLYRISEMDKTQALAPEARHTPED
YLSCYSVLKQCADEEPESPLLYRTVSEAALVRKRMRAPEMYRKDRMGTLAKHRASINGHVYDHE
TSIFTPTFGSETKVRANSIMKTEEVIKQLLQKFKIENSPRDFALYIIFGTGEKRKLKKTDVPLL
QRLIQGPSKSNARIFLMDKDAEEISSDVAPYINFHFSFLKSILQRLDEEEKMEIERIMAKFNTE
RAFILKCLQSKRAAKTETTV

hide sequence

RefSeq Acc Id:

ENSRNOP00000003836 ⟸ ENSRNOT00000003836

RefSeq Acc Id:	XP_038947798 ⟸ XM_039091870
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038947797 ⟸ XM_039091869
- Peptide Label:	isoform X4

Protein Domains

Ras-associating SARAH

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4QR82-F1-model_v2	AlphaFold	Q4QR82	1-341	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699231

Promoter ID:

EPDNEW_R9755

Type:

initiation region

Name:

Rassf6_1

Description:

Ras association domain family member 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	18,983,925 - 18,983,985	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1566082	AgrOrtholog
BioCyc Gene	G2FUF-16193	BioCyc
Ensembl Genes	ENSRNOG00000002866	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00055006140	UniProtKB/Swiss-Prot
	ENSRNOG00060018728	UniProtKB/Swiss-Prot
	ENSRNOG00065017578	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000003836	ENTREZGENE
	ENSRNOT00000003836.7	UniProtKB/Swiss-Prot
	ENSRNOT00055009954	UniProtKB/Swiss-Prot
	ENSRNOT00060032267	UniProtKB/Swiss-Prot
	ENSRNOT00065029397	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7444629	IMAGE-MGC_LOAD
InterPro	C-RASSF	UniProtKB/Swiss-Prot
	RA_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RASSF1-6	UniProtKB/TrEMBL
	SARAH_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SARAH_RASSF6	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ubiquitin-like_domsf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:305251	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:114410	IMAGE-MGC_LOAD
NCBI Gene	305251	ENTREZGENE
PANTHER	PTHR22738	UniProtKB/Swiss-Prot
	PTHR22738:SF3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RASSF	UniProtKB/TrEMBL
Pfam	Nore1-SARAH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PF00788	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rassf6	PhenoGen
PROSITE	PS50200	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SARAH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002866	RatGTEx
	ENSRNOG00055006140	RatGTEx
	ENSRNOG00060018728	RatGTEx
	ENSRNOG00065017578	RatGTEx
SMART	SM00314	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF54236	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A6KKE8_RAT	UniProtKB/TrEMBL
	Q4QR82	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-03	Rassf6	Ras association domain family member 6	Rassf6	Ras association (RalGDS/AF-6) domain family member 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-06-27			Rassf6	Ras association (RalGDS/AF-6) domain family member 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Rassf6	Ras association (RalGDS/AF-6) domain family member 6	MGC114410	similar to Ras association (RalGDS/AF-6) domain family 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	MGC114410	similar to Ras association (RalGDS/AF-6) domain family 6			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar