Snu13l1 (small nuclear ribonucleoprotein 13 like 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Snu13l1 (small nuclear ribonucleoprotein 13 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Snu13l1 (Ensembl: AABR07042323.1)
Name: small nuclear ribonucleoprotein 13 like 1 (Ensembl:similar to NHP2-like protein 1 (High mobility group-like nuclear 1) (Sperm specific antigen 1))
RGD ID: 1566078
Description: Predicted to be located in nucleolus; PARTICIPATES IN ribosome biogenesis pathway; spliceosome pathway; .
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC363514; NHP2-like protein 1; RGD1566078; similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein) (Sperm specific antigen 1) (Fertilization antigen 1) (FA-1); similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1)
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X155,666,366 - 155,666,788 (-)NCBIGRCr8
mRatBN7.2X150,624,087 - 150,624,525 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX150,624,087 - 150,624,473 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X152,781,177 - 152,781,621 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01148,511,967 - 148,512,421 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X158,765,373 - 158,765,759 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1131,589,498 - 131,589,952 (-)NCBICelera
Cytogenetic MapXq37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
RNA binding  (IBA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:39
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000013187
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_039100614   ⟹   XP_038956542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X155,666,366 - 155,666,788 (-)NCBI
mRatBN7.2X150,624,087 - 150,624,525 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038956542 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000074898
  ENSRNOP00000074898.1
Reference Protein Sequences
RefSeq Acc Id: XP_038956542   ⟸   XM_039100614
- UniProtKB: H7C5X3 (UniProtKB/TrEMBL),   A6HT43 (UniProtKB/TrEMBL)
Protein Domains
Ribosomal protein eL8/eL30/eS12/Gadd45

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-H7C5X3-F1-model_v2 AlphaFold H7C5X3 1-128 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566078 AgrOrtholog
BioCyc Gene G2FUF-697 BioCyc
Ensembl Genes ENSRNOG00000005681 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007487.5 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1330.30 UniProtKB/TrEMBL
InterPro H/ACA_rnp_Nhp2_euk UniProtKB/TrEMBL
  L30e-like UniProtKB/TrEMBL
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/TrEMBL
  Ribosomal_L7Ae/L8/Nhp2 UniProtKB/TrEMBL
  Ribosomal_L7Ae_CS UniProtKB/TrEMBL
NCBI Gene 363514 ENTREZGENE
PANTHER NHP2-LIKE PROTEIN 1 UniProtKB/TrEMBL
  RIBOSOMAL PROTEIN L7AE FAMILY MEMBER UniProtKB/TrEMBL
Pfam Ribosomal_L7Ae UniProtKB/TrEMBL
PhenoGen Snu13l1 PhenoGen
PRINTS L7ARS6FAMILY UniProtKB/TrEMBL
  NUCLEARHMG UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L7AE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005681 RatGTEx
Superfamily-SCOP SSF55315 UniProtKB/TrEMBL
UniProt A6HT43 ENTREZGENE, UniProtKB/TrEMBL
  H7C5X3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Snu13l1  small nuclear ribonucleoprotein 13 like 1  RGD1566078  similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1)  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1566078  similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1)   RGD1566078_predicted  similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-10 RGD1566078_predicted  similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1) (predicted)    similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein) (Sperm specific antigen 1) (Fertilization antigen 1) (FA-1) (predicted)  Name updated 1299863 APPROVED
2006-03-07 RGD1566078_predicted  similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein) (Sperm specific antigen 1) (Fertilization antigen 1) (FA-1) (predicted)  LOC363514  similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein) (Sperm specific antigen 1) (Fertilization antigen 1) (FA-1)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC363514  similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein) (Sperm specific antigen 1) (Fertilization antigen 1) (FA-1)      Symbol and Name status set to provisional 70820 PROVISIONAL