Magea10-ps5 (MAGE family member A10, pseudogene 5) - Rat Genome Database

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Gene: Magea10-ps5 (MAGE family member A10, pseudogene 5) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Magea10-ps5
Name: MAGE family member A10, pseudogene 5
RGD ID: 1566060
Description:
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: ENSRNOG00000064790; LOC302645; melanoma-associated antigen 10-like; RGD1566060; similar to Magea5
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X44,216,713 - 44,226,184 (+)NCBIGRCr8
mRatBN7.2X40,363,481 - 40,374,806 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX40,373,522 - 40,374,469 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 EnsemblX40,373,522 - 40,374,469 (+)NCBImRatBN7.2 Ensembl
Rnor_6.0X43,298,497 - 43,310,965 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X43,603,865 - 43,613,351 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X61,861,010 - 61,861,973 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX41,047,309 - 41,049,206 (+)NCBICelera
Cytogenetic MapXq21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Magea10-ps5
45 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2099094741052531Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2099094741203591Rat


Expression


Sequence


RefSeq Acc Id: XM_008758421   ⟹   XP_008756643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
CeleraX41,047,309 - 41,049,206 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017602297   ⟹   XP_017457786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X43,298,497 - 43,310,965 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2432 BioCyc
Ensembl Genes ENSRNOG00000064790 Ensembl, ENTREZGENE
NCBI Gene 302645 ENTREZGENE
PhenoGen Magea10-ps5 PhenoGen
RatGTEx ENSRNOG00000064790 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Magea10-ps5  MAGE family member A10, pseudogene 5  RGD1566060  similar to Magea5  Symbol and Name Changed 1299863 APPROVED
2022-06-02 RGD1566060  similar to Magea5  ENSRNOG00000064790    Data merged from RGD:150345279 737654 PROVISIONAL
2021-08-31 ENSRNOG00000064790        Symbol and Name status set to provisional 45752 PROVISIONAL
2008-04-30 RGD1566060  similar to Magea5   RGD1566060_predicted  similar to Magea5 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1566060_predicted  similar to Magea5 (predicted)  LOC302645  similar to Magea5  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC302645  similar to Magea5      Symbol and Name status set to provisional 70820 PROVISIONAL