Slc25a13 (solute carrier family 25 member 13) - Rat Genome Database

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Gene: Slc25a13 (solute carrier family 25 member 13) Rattus norvegicus
Analyze
Symbol: Slc25a13
Name: solute carrier family 25 member 13
RGD ID: 1565889
Description: Predicted to enable amino acid transmembrane transporter activity; calcium ion binding activity; and identical protein binding activity. Predicted to be involved in several processes, including ATP biosynthetic process; L-glutamate transmembrane transport; and gluconeogenesis. Predicted to act upstream of or within aspartate transmembrane transport and malate-aspartate shuttle. Predicted to be located in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in adult-onset type II citrullinemia and neonatal-onset type II citrullinemia. Orthologous to human SLC25A13 (solute carrier family 25 member 13); PARTICIPATES IN nicotinamide adenine dinucleotide metabolic pathway; INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: calcium-binding mitochondrial carrier protein Aralar2; electrogenic aspartate/glutamate antiporter SLC25A13, mitochondrial; LOC362322; RGD1565889; similar to citrin; solute carrier family 25 (aspartate/glutamate carrier), member 13; solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13; solute carrier family 25, member 13; solute carrier family 25, member 13 (citrin)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8435,145,721 - 35,328,403 (-)NCBIGRCr8
mRatBN7.2434,179,224 - 34,361,912 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl434,179,224 - 34,361,902 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0431,134,165 - 31,757,006 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl431,608,269 - 31,730,386 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0431,476,115 - 31,624,950 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0431,041,075 - 31,053,633 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4430,822,456 - 31,006,241 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera429,703,579 - 29,885,288 (-)NCBICelera
Cytogenetic Map4q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
amiodarone  (EXP)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP,ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (EXP)
clozapine  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dibutyl phthalate  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fluoranthene  (ISO)
flutamide  (EXP)
folic acid  (ISO)
hydralazine  (ISO)
hydrazine  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
metacetamol  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodimethylamine  (EXP)
nitrofen  (EXP)
omeprazole  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (EXP)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
tolcapone  (EXP)
topotecan  (EXP)
torcetrapib  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The gene mutated in adult-onset type II citrullinaemia encodes a putative mitochondrial carrier protein. Kobayashi K, etal., Nat Genet. 1999 Jun;22(2):159-63.
3. Neuronal and astrocytic shuttle mechanisms for cytosolic-mitochondrial transfer of reducing equivalents: current evidence and pharmacological tools. McKenna MC, etal., Biochem Pharmacol. 2006 Feb 14;71(4):399-407. Epub 2005 Dec 20.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. Identification of two novel mutations in the SLC25A13 gene and detection of seven mutations in 102 patients with adult-onset type II citrullinemia. Yasuda T, etal., Hum Genet. 2000 Dec;107(6):537-45.
Additional References at PubMed
PMID:10642534   PMID:11566871   PMID:12851387   PMID:12865426   PMID:14651853   PMID:14701727   PMID:17213189   PMID:18614015   PMID:25410934  


Genomics

Comparative Map Data
Slc25a13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8435,145,721 - 35,328,403 (-)NCBIGRCr8
mRatBN7.2434,179,224 - 34,361,912 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl434,179,224 - 34,361,902 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0431,134,165 - 31,757,006 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl431,608,269 - 31,730,386 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0431,476,115 - 31,624,950 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0431,041,075 - 31,053,633 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4430,822,456 - 31,006,241 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera429,703,579 - 29,885,288 (-)NCBICelera
Cytogenetic Map4q21NCBI
SLC25A13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38796,120,220 - 96,322,098 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl796,120,220 - 96,322,147 (-)EnsemblGRCh38hg38GRCh38
GRCh37795,749,532 - 95,951,410 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36795,587,468 - 95,789,341 (-)NCBINCBI36Build 36hg18NCBI36
Build 34795,394,183 - 95,596,056NCBI
Celera790,449,390 - 90,651,529 (-)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef790,357,333 - 90,559,663 (-)NCBIHuRef
CHM1_1795,679,529 - 95,881,481 (-)NCBICHM1_1
T2T-CHM13v2.0797,356,097 - 97,557,993 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2795,078,578 - 95,280,528 (-)NCBI
Slc25a13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3966,041,218 - 6,217,304 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl66,041,218 - 6,217,173 (-)EnsemblGRCm39 Ensembl
GRCm3866,041,218 - 6,217,304 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl66,041,218 - 6,217,173 (-)EnsemblGRCm38mm10GRCm38
MGSCv3765,991,218 - 6,167,173 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3665,991,218 - 6,167,118 (-)NCBIMGSCv36mm8
Celera66,191,941 - 6,368,691 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map62.3NCBI
Slc25a13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543212,684,596 - 12,826,667 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543212,685,253 - 12,788,307 (-)NCBIChiLan1.0ChiLan1.0
SLC25A13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26113,956,843 - 114,158,292 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17162,221,482 - 162,422,931 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0788,072,139 - 88,273,470 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17101,658,507 - 101,859,587 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7101,658,507 - 101,859,587 (-)Ensemblpanpan1.1panPan2
SLC25A13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11421,295,651 - 21,481,767 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1421,296,512 - 21,482,236 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1420,854,349 - 21,039,621 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01421,117,304 - 21,303,024 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1421,117,307 - 21,303,055 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11421,263,543 - 21,449,041 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01420,997,051 - 21,182,116 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01421,255,033 - 21,440,576 (-)NCBIUU_Cfam_GSD_1.0
Slc25a13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511834,647,374 - 34,802,646 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365854,058,877 - 4,215,942 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365854,061,297 - 4,215,912 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl975,781,361 - 75,980,518 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1975,781,421 - 75,980,606 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2983,193,939 - 83,393,704 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12152,728,251 - 52,929,685 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2152,729,558 - 52,930,021 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604251,423,801 - 51,634,189 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248132,852,585 - 2,998,651 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248132,851,620 - 3,019,593 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc25a13
915 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:40
Interacting mature miRNAs:40
Transcripts:ENSRNOT00000013817
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)42271068534430484Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat

Markers in Region
RH130927  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2434,180,167 - 34,180,571 (+)MAPPERmRatBN7.2
Rnor_6.0431,135,109 - 31,135,512NCBIRnor6.0
Rnor_5.0431,042,019 - 31,042,422UniSTSRnor5.0
RGSC_v3.4430,823,640 - 30,824,043UniSTSRGSC3.4
Celera429,704,523 - 29,704,926UniSTS
Cytogenetic Map4q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 43 56 41 17 41 17 35 33 8
Low 1 1 2 8 11 57 8 3 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000013817   ⟹   ENSRNOP00000013816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl434,213,409 - 34,324,349 (-)Ensembl
Rnor_6.0 Ensembl431,608,269 - 31,730,386 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115980   ⟹   ENSRNOP00000076742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl434,179,224 - 34,361,902 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119208   ⟹   ENSRNOP00000089641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl434,179,224 - 34,255,674 (-)Ensembl
RefSeq Acc Id: NM_001419624   ⟹   NP_001406553
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8435,145,721 - 35,328,360 (-)NCBI
mRatBN7.2434,179,224 - 34,361,877 (-)NCBI
RefSeq Acc Id: NM_001419627   ⟹   NP_001406556
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8435,145,721 - 35,328,360 (-)NCBI
mRatBN7.2434,179,224 - 34,361,877 (-)NCBI
RefSeq Acc Id: XM_039108599   ⟹   XP_038964527
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8435,145,721 - 35,222,425 (-)NCBI
mRatBN7.2434,179,224 - 34,255,939 (-)NCBI
RefSeq Acc Id: XM_039108600   ⟹   XP_038964528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8435,145,721 - 35,222,424 (-)NCBI
mRatBN7.2434,179,224 - 34,255,939 (-)NCBI
RefSeq Acc Id: XR_005503442
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8435,202,694 - 35,328,403 (-)NCBI
mRatBN7.2434,180,845 - 34,361,912 (-)NCBI
RefSeq Acc Id: XR_005503443
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8435,202,694 - 35,328,403 (-)NCBI
mRatBN7.2434,180,845 - 34,361,912 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000013816   ⟸   ENSRNOT00000013817
RefSeq Acc Id: XP_038964527   ⟸   XM_039108599
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A972 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964528   ⟸   XM_039108600
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A972 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000089641   ⟸   ENSRNOT00000119208
RefSeq Acc Id: ENSRNOP00000076742   ⟸   ENSRNOT00000115980
RefSeq Acc Id: NP_001406556   ⟸   NM_001419627
- Peptide Label: isoform 2
- UniProtKB: A0A8I5ZK53 (UniProtKB/TrEMBL),   A6IDU3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001406553   ⟸   NM_001419624
- Peptide Label: isoform 1
- UniProtKB: F1LZW6 (UniProtKB/Swiss-Prot),   A6IDU3 (UniProtKB/TrEMBL)
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LZW6-F1-model_v2 AlphaFold F1LZW6 1-484 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565889 AgrOrtholog
BioCyc Gene G2FUF-45701 BioCyc
Ensembl Genes ENSRNOG00000009957 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00055001695 UniProtKB/Swiss-Prot
  ENSRNOG00060019003 UniProtKB/Swiss-Prot
  ENSRNOG00065010701 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000013817.8 UniProtKB/TrEMBL
  ENSRNOT00000115980 ENTREZGENE
  ENSRNOT00000115980.1 UniProtKB/TrEMBL
  ENSRNOT00000119208.1 UniProtKB/TrEMBL
  ENSRNOT00055002740 UniProtKB/Swiss-Prot
  ENSRNOT00060033181 UniProtKB/Swiss-Prot
  ENSRNOT00065017366 UniProtKB/Swiss-Prot
Gene3D-CATH 1.50.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mit_carrier UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362322 UniProtKB/Swiss-Prot
NCBI Gene 362322 ENTREZGENE
PANTHER MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45678:SF12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc25a13 PhenoGen
PRINTS MITOCARRIER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOLCAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009957 RatGTEx
  ENSRNOG00055001695 RatGTEx
  ENSRNOG00060019003 RatGTEx
  ENSRNOG00065010701 RatGTEx
Superfamily-SCOP SSF103506 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZK53 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A972 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W1AM87_RAT UniProtKB/TrEMBL
  A6IDU3 ENTREZGENE, UniProtKB/TrEMBL
  F1LZW6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-09 Slc25a13  solute carrier family 25 member 13  Slc25a13  solute carrier family 25 (aspartate/glutamate carrier), member 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-16 Slc25a13  solute carrier family 25 (aspartate/glutamate carrier), member 13  Slc25a13  solute carrier family 25, member 13 (citrin)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-19 Slc25a13  solute carrier family 25, member 13 (citrin)  Slc25a13  solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Slc25a13  solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13  RGD1565889_predicted  similar to citrin (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565889_predicted  similar to citrin (predicted)  LOC362322  similar to citrin  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC362322  similar to citrin      Symbol and Name status set to provisional 70820 PROVISIONAL