Nme2-ps8 (NME/NM23 nucleoside diphosphate kinase 2, pseudogene 8) - Rat Genome Database

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Gene: Nme2-ps8 (NME/NM23 nucleoside diphosphate kinase 2, pseudogene 8) Rattus norvegicus
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Symbol: Nme2-ps8
Name: NME/NM23 nucleoside diphosphate kinase 2, pseudogene 8
RGD ID: 1565403
Description: INTERACTS WITH methoxychlor
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: ENSRNOG00000063464; LOC501041; RGD1565403; similar to Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88108,002,561 - 108,003,149 (-)NCBIGRCr8
mRatBN7.2899,123,332 - 99,123,801 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl899,123,332 - 99,123,589 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl899,123,332 - 99,123,589 (-)NCBImRatBN7.2 Ensembl
Rnor_6.08106,546,388 - 106,546,896 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08105,988,261 - 105,988,735 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48103,705,253 - 103,712,331 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera898,532,679 - 98,533,187 (-)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
methoxychlor  (EXP)

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline

Genomics

Variants

.
Variants in Nme2-ps8
10 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000116679
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl899,123,332 - 99,123,589 (-)Ensembl
RefSeq Acc Id: XM_002727124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera898,532,713 - 98,533,167 (-)RGD
RefSeq Acc Id: XM_576453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.48103,705,253 - 103,712,331 (-)RGD
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-29417 BioCyc
Ensembl Genes ENSRNOG00000063464 Ensembl, ENTREZGENE
NCBI Gene 501041 ENTREZGENE
PhenoGen Nme2-ps8 PhenoGen
RatGTEx ENSRNOG00000063464 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Nme2-ps8  NME/NM23 nucleoside diphosphate kinase 2, pseudogene 8  RGD1565403  similar to Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)  Symbol and Name Changed 1299863 APPROVED
2022-06-02 RGD1565403  similar to Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)  ENSRNOG00000063464    Data merged from RGD:150342391 737654 PROVISIONAL
2021-08-31 ENSRNOG00000063464        Symbol and Name status set to provisional 45752 PROVISIONAL
2008-04-30 RGD1565403  similar to Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)   RGD1565403_predicted  similar to Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565403_predicted  similar to Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18) (predicted)  LOC501041  similar to Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501041  similar to Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)      Symbol and Name status set to provisional 70820 PROVISIONAL