Tex29 (testis expressed 29) - Rat Genome Database

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Gene: Tex29 (testis expressed 29) Rattus norvegicus
Analyze
Symbol: Tex29
Name: testis expressed 29
RGD ID: 1565377
Description: Predicted to be located in membrane. Orthologous to human TEX29 (testis expressed 29); INTERACTS WITH bisphenol A; Aflatoxin B2 alpha (ortholog); aristolochic acid A (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC498664; LOC498664; similar to hypothetical protein MGC35169; testis-expressed protein 29; testis-expressed sequence 29 protein; uncharacterized protein C13orf16 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81684,352,574 - 84,366,273 (-)NCBIGRCr8
mRatBN7.21677,650,471 - 77,664,171 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1677,650,473 - 77,664,116 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1682,930,937 - 82,944,579 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01686,383,582 - 86,397,224 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01681,626,290 - 81,639,932 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01682,985,834 - 83,000,928 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1682,985,835 - 82,999,827 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01682,458,364 - 82,472,373 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41682,500,674 - 82,514,319 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1675,452,334 - 75,465,960 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Tex29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81684,352,574 - 84,366,273 (-)NCBIGRCr8
mRatBN7.21677,650,471 - 77,664,171 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1677,650,473 - 77,664,116 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1682,930,937 - 82,944,579 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01686,383,582 - 86,397,224 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01681,626,290 - 81,639,932 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01682,985,834 - 83,000,928 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1682,985,835 - 82,999,827 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01682,458,364 - 82,472,373 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41682,500,674 - 82,514,319 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1675,452,334 - 75,465,960 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
TEX29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813111,316,185 - 111,344,248 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13111,316,184 - 111,344,249 (+)EnsemblGRCh38hg38GRCh38
GRCh3713111,968,532 - 111,996,595 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613110,771,016 - 110,794,595 (+)NCBINCBI36Build 36hg18NCBI36
Celera1392,819,927 - 92,845,111 (+)NCBICelera
Cytogenetic Map13q34NCBI
HuRef1392,571,894 - 92,597,159 (+)NCBIHuRef
CHM1_113111,940,504 - 111,963,906 (+)NCBICHM1_1
T2T-CHM13v2.013110,545,648 - 110,575,278 (+)NCBIT2T-CHM13v2.0
Tex29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39811,890,488 - 11,905,761 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl811,890,474 - 11,905,761 (+)EnsemblGRCm39 Ensembl
GRCm38811,840,487 - 11,855,761 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl811,840,474 - 11,855,761 (+)EnsemblGRCm38mm10GRCm38
MGSCv37811,840,521 - 11,855,761 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36811,840,493 - 11,855,733 (+)NCBIMGSCv36mm8
Celera812,015,588 - 12,030,534 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map85.73NCBI
Tex29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554041,405,904 - 1,745,715 (-)NCBIChiLan1.0ChiLan1.0
TEX29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214112,811,095 - 112,833,317 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113111,490,727 - 111,512,810 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01392,446,990 - 92,473,521 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113111,558,979 - 111,580,699 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13111,559,001 - 111,580,699 (+)Ensemblpanpan1.1panPan2
TEX29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12259,309,452 - 59,326,308 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2259,313,874 - 59,325,494 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2259,019,207 - 59,036,050 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02259,932,372 - 59,949,211 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2259,932,559 - 59,949,248 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12259,433,925 - 59,450,749 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02259,426,878 - 59,443,709 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02259,461,621 - 59,478,482 (+)NCBIUU_Cfam_GSD_1.0
Tex29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945194,174,391 - 194,192,183 (+)NCBIHiC_Itri_2
TEX29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1177,532,266 - 77,545,913 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11177,531,858 - 77,555,300 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21185,007,696 - 85,021,731 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TEX29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1389,479,853 - 89,502,535 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl389,480,641 - 89,502,410 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604646,250,751 - 46,273,759 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Tex29
66 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:100
Interacting mature miRNAs:117
Transcripts:ENSRNOT00000041223
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium 7
Low
Below cutoff 1 7 7 1 1 26 6 6 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000041223   ⟹   ENSRNOP00000042289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1677,650,473 - 77,664,116 (-)Ensembl
Rnor_6.0 Ensembl1682,985,835 - 82,999,827 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000078867   ⟹   ENSRNOP00000072533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1682,985,841 - 82,999,608 (-)Ensembl
RefSeq Acc Id: NM_001017508   ⟹   NP_001017508
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81684,352,574 - 84,366,273 (-)NCBI
mRatBN7.21677,650,472 - 77,664,171 (-)NCBI
Rnor_6.01682,985,834 - 82,999,827 (-)NCBI
Rnor_5.01682,458,364 - 82,472,373 (-)NCBI
RGSC_v3.41682,500,674 - 82,514,319 (-)RGD
Celera1675,452,334 - 75,465,960 (-)RGD
Sequence:
RefSeq Acc Id: NM_001415041   ⟹   NP_001401970
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81684,352,574 - 84,366,273 (-)NCBI
mRatBN7.21677,650,472 - 77,664,171 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001017508 (Get FASTA)   NCBI Sequence Viewer  
  NP_001401970 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH79268 (Get FASTA)   NCBI Sequence Viewer  
  EDM08842 (Get FASTA)   NCBI Sequence Viewer  
  EDM08843 (Get FASTA)   NCBI Sequence Viewer  
  EDM08844 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000042289
  ENSRNOP00000042289.2
GenBank Protein Q6AXY3 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001017508   ⟸   NM_001017508
- UniProtKB: Q6AXY3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000042289   ⟸   ENSRNOT00000041223
RefSeq Acc Id: ENSRNOP00000072533   ⟸   ENSRNOT00000078867
RefSeq Acc Id: NP_001401970   ⟸   NM_001415041
- UniProtKB: Q6AXY3 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AXY3-F1-model_v2 AlphaFold Q6AXY3 1-182 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700240
Promoter ID:EPDNEW_R10764
Type:multiple initiation site
Name:Tex29_1
Description:testis expressed 29
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01682,999,860 - 82,999,920EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565377 AgrOrtholog
BioCyc Gene G2FUF-10665 BioCyc
Ensembl Genes ENSRNOG00000033585 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041223 ENTREZGENE
  ENSRNOT00000041223.3 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7133664 IMAGE-MGC_LOAD
InterPro TEX29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:498664 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94379 IMAGE-MGC_LOAD
NCBI Gene 498664 ENTREZGENE
PANTHER TESTIS-EXPRESSED PROTEIN 29 UniProtKB/Swiss-Prot
  TESTIS-EXPRESSED PROTEIN 29 UniProtKB/Swiss-Prot
  TESTIS-EXPRESSED PROTEIN 29 UniProtKB/TrEMBL
  TESTIS-EXPRESSED PROTEIN 29 UniProtKB/TrEMBL
Pfam TEX29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tex29 PhenoGen
RatGTEx ENSRNOG00000033585 RatGTEx
UniProt A0A8L2QKW2_RAT UniProtKB/TrEMBL
  Q6AXY3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-18 Tex29  testis expressed 29  LOC498664  similar to hypothetical protein MGC35169  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC498664  similar to hypothetical protein MGC35169      Symbol and Name status set to provisional 70820 PROVISIONAL