Unkl (unk like zinc finger) - Rat Genome Database

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Gene: Unkl (unk like zinc finger) Rattus norvegicus
Analyze
Symbol: Unkl
Name: unk like zinc finger
RGD ID: 1565247
Description: Predicted to enable metal ion binding activity. Predicted to be located in cytosol. Orthologous to human UNKL (unk like zinc finger); INTERACTS WITH 3,3',5,5'-tetrabromobisphenol A; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC302987; putative E3 ubiquitin-protein ligase UNKL; RGD1565247; similar to chromosome 16 open reading frame 28; unkempt family like zinc finger; unkempt family zinc finger-like; unkempt homolog (Drosophila)-like; unkempt homolog-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,710,627 - 14,756,725 (+)NCBIGRCr8
mRatBN7.21014,206,125 - 14,252,226 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,206,189 - 14,252,225 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01014,547,126 - 14,593,090 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,547,172 - 14,590,762 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,362,268 - 14,410,685 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41014,434,117 - 14,480,497 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1013,878,739 - 13,924,650 (+)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19028597  


Genomics

Comparative Map Data
Unkl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,710,627 - 14,756,725 (+)NCBIGRCr8
mRatBN7.21014,206,125 - 14,252,226 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,206,189 - 14,252,225 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01014,547,126 - 14,593,090 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,547,172 - 14,590,762 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,362,268 - 14,410,685 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41014,434,117 - 14,480,497 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1013,878,739 - 13,924,650 (+)NCBICelera
Cytogenetic Map10q12NCBI
UNKL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,363,205 - 1,414,704 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,363,205 - 1,414,751 (-)EnsemblGRCh38hg38GRCh38
GRCh37161,413,206 - 1,464,705 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,353,207 - 1,404,701 (-)NCBINCBI36Build 36hg18NCBI36
Celera161,627,320 - 1,677,303 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,341,601 - 1,391,408 (-)NCBIHuRef
CHM1_1161,413,102 - 1,464,651 (-)NCBICHM1_1
T2T-CHM13v2.0161,379,337 - 1,429,329 (-)NCBIT2T-CHM13v2.0
Unkl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,407,336 - 25,453,417 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,407,371 - 25,453,417 (+)EnsemblGRCm39 Ensembl
GRCm381725,188,361 - 25,234,443 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,188,397 - 25,234,443 (+)EnsemblGRCm38mm10GRCm38
MGSCv371725,359,527 - 25,371,387 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,950,182 - 24,962,042 (+)NCBIMGSCv36mm8
Celera1725,752,118 - 25,771,255 (+)NCBICelera
Celera1722,569,874 - 22,572,555 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.53NCBI
Unkl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,827,350 - 15,870,561 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,827,352 - 15,870,561 (+)NCBIChiLan1.0ChiLan1.0
UNKL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2181,626,825 - 1,676,774 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1165,414,094 - 5,469,218 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01611,145 - 39,682 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1161,418,377 - 1,433,175 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl161,418,377 - 1,457,134 (-)Ensemblpanpan1.1panPan2
UNKL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,382,858 - 39,405,954 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,376,488 - 39,404,885 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,644,236 - 40,673,896 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,722,519 - 39,752,188 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,722,571 - 39,752,187 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,399,493 - 39,429,140 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,371,965 - 39,401,580 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,850,390 - 39,880,071 (+)NCBIUU_Cfam_GSD_1.0
Unkl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,179,801 - 104,217,621 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366942,492,102 - 2,527,305 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366942,492,102 - 2,529,662 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UNKL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,445,034 - 40,513,047 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1340,444,997 - 40,513,050 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,010,437 - 42,078,463 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UNKL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,279,429 - 1,303,996 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,253,941 - 1,303,950 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606829,782,557 - 29,832,809 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Unkl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249132,071,629 - 2,114,718 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249132,071,512 - 2,114,712 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Unkl
250 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat

Markers in Region
RH133073  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21014,251,840 - 14,252,023 (+)MAPPERmRatBN7.2
Rnor_6.01014,592,705 - 14,592,887NCBIRnor6.0
Rnor_5.01014,410,300 - 14,410,482UniSTSRnor5.0
RGSC_v3.41014,482,637 - 14,482,819UniSTSRGSC3.4
Celera1013,924,265 - 13,924,447UniSTS
RH 3.4 Map10163.2UniSTS
Cytogenetic Map10q12UniSTS
BF413652  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21014,249,303 - 14,249,443 (+)MAPPERmRatBN7.2
Rnor_6.01014,590,168 - 14,590,307NCBIRnor6.0
Rnor_5.01014,407,763 - 14,407,902UniSTSRnor5.0
RGSC_v3.41014,480,100 - 14,480,239UniSTSRGSC3.4
Celera1013,921,728 - 13,921,867UniSTS
RH 3.4 Map10162.6UniSTS
Cytogenetic Map10q12UniSTS
RH140233  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21014,252,341 - 14,252,524 (+)MAPPERmRatBN7.2
Rnor_6.01014,593,206 - 14,593,388NCBIRnor6.0
Rnor_5.01014,410,801 - 14,410,983UniSTSRnor5.0
RGSC_v3.41014,483,138 - 14,483,320UniSTSRGSC3.4
Celera1013,924,766 - 13,924,948UniSTS
RH 3.4 Map10171.1UniSTS
Cytogenetic Map10q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 9 2 14 2 56 13 28 11
Low 3 43 48 39 5 39 8 11 18 22 13 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001059160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006246057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006246059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC094421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000092043   ⟹   ENSRNOP00000068992
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1014,206,189 - 14,252,225 (+)Ensembl
Rnor_6.0 Ensembl1014,547,172 - 14,590,762 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097950   ⟹   ENSRNOP00000097110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1014,240,211 - 14,252,225 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111526   ⟹   ENSRNOP00000081568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1014,206,189 - 14,252,225 (+)Ensembl
RefSeq Acc Id: XM_006246057   ⟹   XP_006246119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,710,627 - 14,756,725 (+)NCBI
mRatBN7.21014,206,125 - 14,252,226 (+)NCBI
Rnor_6.01014,547,126 - 14,593,090 (+)NCBI
Rnor_5.01014,362,268 - 14,410,685 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006246059   ⟹   XP_006246121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,741,258 - 14,756,725 (+)NCBI
mRatBN7.21014,236,489 - 14,252,226 (+)NCBI
Rnor_6.01014,581,167 - 14,593,090 (+)NCBI
Rnor_5.01014,362,268 - 14,410,685 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767609   ⟹   XP_008765831
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,710,627 - 14,756,725 (+)NCBI
mRatBN7.21014,206,125 - 14,252,226 (+)NCBI
Rnor_6.01014,547,127 - 14,593,090 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767613   ⟹   XP_008765835
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,741,258 - 14,756,725 (+)NCBI
mRatBN7.21014,236,487 - 14,252,226 (+)NCBI
Rnor_6.01014,581,167 - 14,593,090 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597602   ⟹   XP_017453091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,710,657 - 14,756,725 (+)NCBI
mRatBN7.21014,206,149 - 14,252,226 (+)NCBI
Rnor_6.01014,547,126 - 14,593,090 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597603   ⟹   XP_017453092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,710,664 - 14,756,725 (+)NCBI
mRatBN7.21014,206,163 - 14,252,226 (+)NCBI
Rnor_6.01014,547,168 - 14,593,090 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063270088   ⟹   XP_063126158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,710,673 - 14,756,725 (+)NCBI
RefSeq Acc Id: XM_063270089   ⟹   XP_063126159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,710,687 - 14,756,725 (+)NCBI
RefSeq Acc Id: XM_063270090   ⟹   XP_063126160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,710,664 - 14,756,725 (+)NCBI
RefSeq Acc Id: XM_063270091   ⟹   XP_063126161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,710,627 - 14,756,725 (+)NCBI
RefSeq Acc Id: XP_006246119   ⟸   XM_006246057
- Peptide Label: isoform X1
- UniProtKB: D4A3S7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006246121   ⟸   XM_006246059
- Peptide Label: isoform X8
- UniProtKB: A0A8I6ARA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765831   ⟸   XM_008767609
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008765835   ⟸   XM_008767613
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017453091   ⟸   XM_017597602
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017453092   ⟸   XM_017597603
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000068992   ⟸   ENSRNOT00000092043
RefSeq Acc Id: ENSRNOP00000097110   ⟸   ENSRNOT00000097950
RefSeq Acc Id: ENSRNOP00000081568   ⟸   ENSRNOT00000111526
RefSeq Acc Id: XP_063126161   ⟸   XM_063270091
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063126160   ⟸   XM_063270090
- Peptide Label: isoform X6
- UniProtKB: A0A8I6G851 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126158   ⟸   XM_063270088
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063126159   ⟸   XM_063270089
- Peptide Label: isoform X5
Protein Domains
C3H1-type   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A3S7-F1-model_v2 AlphaFold D4A3S7 1-727 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697047
Promoter ID:EPDNEW_R7569
Type:multiple initiation site
Name:Unkl_1
Description:unkempt family like zinc finger
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01014,547,157 - 14,547,217EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565247 AgrOrtholog
BioCyc Gene G2FUF-25798 BioCyc
Ensembl Genes ENSRNOG00000054605 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000092043 ENTREZGENE
  ENSRNOT00000092043.2 UniProtKB/TrEMBL
  ENSRNOT00000097950.1 UniProtKB/TrEMBL
  ENSRNOT00000111526.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.340 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Zinc finger, CCCH-type UniProtKB/TrEMBL
InterPro Unkempt-like UniProtKB/TrEMBL
  Unkempt_zf UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:302987 UniProtKB/TrEMBL
NCBI Gene 302987 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE UNKL-RELATED UniProtKB/TrEMBL
  PTHR14493 UniProtKB/TrEMBL
Pfam zf-C3HC4_3 UniProtKB/TrEMBL
  zf-CCCH UniProtKB/TrEMBL
  zf_CCCH_5 UniProtKB/TrEMBL
PhenoGen Unkl PhenoGen
PROSITE ZF_C3H1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000054605 RatGTEx
SMART ZnF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP SSF90229 UniProtKB/TrEMBL
UniProt A0A8I6ARA8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G851 ENTREZGENE, UniProtKB/TrEMBL
  D4A3S7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-12-04 Unkl  unk like zinc finger  Unkl  unkempt family like zinc finger  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-17 Unkl  unkempt family like zinc finger  Unkl  unkempt family zinc finger-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-11-11 Unkl  unkempt family zinc finger-like  Unkl  unkempt homolog (Drosophila)-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-01-22 Unkl  unkempt homolog (Drosophila)-like  RGD1565247  similar to chromosome 16 open reading frame 28  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565247  similar to chromosome 16 open reading frame 28   RGD1565247_predicted  similar to chromosome 16 open reading frame 28 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565247_predicted  similar to chromosome 16 open reading frame 28 (predicted)  LOC302987  similar to chromosome 16 open reading frame 28  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC302987  similar to chromosome 16 open reading frame 28      Symbol and Name status set to provisional 70820 PROVISIONAL