Fsip2l1 (fibrous sheath-interacting protein 2 like 1) - Rat Genome Database

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Gene: Fsip2l1 (fibrous sheath-interacting protein 2 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Fsip2l1 (Ensembl: RGD1564955)
Name: fibrous sheath-interacting protein 2 like 1 (Ensembl:similar to fibrous sheath interacting protein 2)
RGD ID: 1564955
Description: INTERACTS WITH atrazine
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fibrous sheath-interacting protein 2; LOC501642; RGD1564955; similar to fibrous sheath interacting protein 2
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X132,954,669 - 132,987,253 (-)NCBIGRCr8
mRatBN7.2X128,076,772 - 128,109,233 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX128,077,587 - 128,109,115 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X135,728,749 - 135,761,070 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX135,732,569 - 135,761,025 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X135,798,336 - 135,829,993 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X135,304,685 - 135,336,204 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX127,021,603 - 127,053,863 (-)NCBICelera
Cytogenetic MapXq36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
atrazine  (EXP)

References
Additional References at PubMed
PMID:12477932  


Genomics

Variants

.
Variants in Fsip2l1
62 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:39
Interacting mature miRNAs:42
Transcripts:ENSRNOT00000033044
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system reproductive system
High
Medium 5
Low 2
Below cutoff 1 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006227541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006257545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC160914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000033044   ⟹   ENSRNOP00000037931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX128,077,587 - 128,109,115 (-)Ensembl
Rnor_6.0 EnsemblX135,732,569 - 135,761,025 (-)Ensembl
RefSeq Acc Id: XM_006257545   ⟹   XP_006257607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X132,955,392 - 132,987,119 (-)NCBI
mRatBN7.2X128,077,525 - 128,109,228 (-)NCBI
Rnor_6.0X135,729,374 - 135,761,031 (-)NCBI
Rnor_5.0X135,798,336 - 135,829,993 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008773545   ⟹   XP_008771767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X132,955,392 - 132,987,119 (-)NCBI
mRatBN7.2X128,077,230 - 128,109,227 (-)NCBI
Rnor_6.0X135,732,442 - 135,761,031 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039100310   ⟹   XP_038956238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X132,954,669 - 132,987,120 (-)NCBI
mRatBN7.2X128,076,772 - 128,109,228 (-)NCBI
RefSeq Acc Id: XM_039100311   ⟹   XP_038956239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X132,955,392 - 132,987,118 (-)NCBI
mRatBN7.2X128,077,234 - 128,109,226 (-)NCBI
RefSeq Acc Id: XM_039100312   ⟹   XP_038956240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X132,958,396 - 132,987,125 (-)NCBI
mRatBN7.2X128,077,191 - 128,109,229 (-)NCBI
RefSeq Acc Id: XM_039100314   ⟹   XP_038956242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X132,955,392 - 132,987,253 (-)NCBI
mRatBN7.2X128,077,172 - 128,109,233 (-)NCBI
RefSeq Acc Id: XM_063280528   ⟹   XP_063136598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X132,958,396 - 132,987,122 (-)NCBI
RefSeq Acc Id: XM_063280529   ⟹   XP_063136599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X132,958,396 - 132,987,253 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_006257607   ⟸   XM_006257545
- Peptide Label: isoform X6
- UniProtKB: B1H295 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771767   ⟸   XM_008773545
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000037931   ⟸   ENSRNOT00000033044
RefSeq Acc Id: XP_038956238   ⟸   XM_039100310
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038956242   ⟸   XM_039100314
- Peptide Label: isoform X7
- UniProtKB: F7EYS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956240   ⟸   XM_039100312
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038956239   ⟸   XM_039100311
- Peptide Label: isoform X4
- UniProtKB: B1H295 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136599   ⟸   XM_063280529
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063136598   ⟸   XM_063280528
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7EYS3-F1-model_v2 AlphaFold F7EYS3 1-570 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13702024
Promoter ID:EPDNEW_R12539
Type:single initiation site
Name:RGD1564955_1
Description:similar to fibrous sheath interacting protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X135,761,048 - 135,761,108EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564955 AgrOrtholog
BioCyc Gene G2FUF-1119 BioCyc
Ensembl Genes ENSRNOG00000024068 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000033044.7 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7457275 IMAGE-MGC_LOAD
InterPro FSIP2 UniProtKB/TrEMBL
MGC_CLONE MGC:188654 IMAGE-MGC_LOAD
NCBI Gene 501642 ENTREZGENE
PANTHER FIBROUS SHEATH INTERACTING PROTEIN 2 UniProtKB/TrEMBL
  FIBROUS SHEATH-INTERACTING PROTEIN 2-LIKE UniProtKB/TrEMBL
PhenoGen Fsip2l1 PhenoGen
RatGTEx ENSRNOG00000024068 RatGTEx
UniProt B1H295 ENTREZGENE, UniProtKB/TrEMBL
  F7EYS3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Fsip2l1  fibrous sheath-interacting protein 2 like 1  RGD1564955  similar to fibrous sheath interacting protein 2  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1564955  similar to fibrous sheath interacting protein 2   RGD1564955_predicted  similar to fibrous sheath interacting protein 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564955_predicted  similar to fibrous sheath interacting protein 2 (predicted)  LOC501642  similar to fibrous sheath interacting protein 2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501642  similar to fibrous sheath interacting protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL