Atp6ap1l (ATPase H+ transporting accessory protein 1 like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Atp6ap1l (ATPase H+ transporting accessory protein 1 like) Rattus norvegicus
Analyze
Symbol: Atp6ap1l
Name: ATPase H+ transporting accessory protein 1 like
RGD ID: 1564936
Description: Predicted to enable ATPase activator activity. Predicted to be involved in regulation of cellular pH. Predicted to be part of proton-transporting V-type ATPase complex. Orthologous to human ATP6AP1L (ATPase H+ transporting accessory protein 1 like (pseudogene)); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil; aflatoxin B1.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: ATPase, H+ transporting, lysosomal accessory protein 1-like; LOC361875; predicted gene, EG435376; RGD1564936; similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit) ; similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit) (V-ATPase S1 accessory protein) (V-ATPase Ac45 subunit) (XAP-3)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8223,772,724 - 23,814,913 (-)NCBIGRCr8
mRatBN7.2222,037,542 - 22,079,376 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl222,037,563 - 22,065,038 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx229,080,928 - 29,108,224 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0227,181,275 - 27,208,573 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0221,997,285 - 22,024,499 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0219,781,375 - 19,809,355 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl219,781,408 - 19,808,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0219,657,613 - 19,696,546 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4221,004,512 - 21,032,007 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera218,165,643 - 18,192,478 (-)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Atp6ap1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8223,772,724 - 23,814,913 (-)NCBIGRCr8
mRatBN7.2222,037,542 - 22,079,376 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl222,037,563 - 22,065,038 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx229,080,928 - 29,108,224 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0227,181,275 - 27,208,573 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0221,997,285 - 22,024,499 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0219,781,375 - 19,809,355 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl219,781,408 - 19,808,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0219,657,613 - 19,696,546 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4221,004,512 - 21,032,007 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera218,165,643 - 18,192,478 (-)NCBICelera
Cytogenetic Map2q12NCBI
ATP6AP1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38582,278,650 - 82,318,806 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl582,295,449 - 82,318,300 (+)EnsemblGRCh38hg38GRCh38
GRCh37581,574,469 - 81,614,625 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36581,636,922 - 81,649,903 (+)NCBINCBI36Build 36hg18NCBI36
Celera577,506,144 - 77,519,126 (+)NCBICelera
Cytogenetic Map5q14.2NCBI
HuRef576,809,650 - 76,822,630 (+)NCBIHuRef
CHM1_1581,034,323 - 81,047,320 (+)NCBICHM1_1
T2T-CHM13v2.0582,764,440 - 82,804,585 (+)NCBIT2T-CHM13v2.0
Atp6ap1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391391,031,558 - 91,053,478 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1391,031,552 - 91,053,474 (-)EnsemblGRCm39 Ensembl
GRCm381390,883,439 - 90,905,355 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1390,883,433 - 90,905,355 (-)EnsemblGRCm38mm10GRCm38
MGSCv371391,023,054 - 91,044,960 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361391,357,688 - 91,379,594 (-)NCBIMGSCv36mm8
Celera1394,511,861 - 94,533,720 (-)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1346.45NCBI
Atp6ap1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541828,077,388 - 28,106,183 (-)NCBIChiLan1.0ChiLan1.0
LOC100995668
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2432,986,395 - 33,027,746 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1531,140,021 - 31,181,534 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0532,964,011 - 33,004,822 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1533,283,259 - 33,306,354 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl533,280,839 - 33,298,327 (-)Ensemblpanpan1.1panPan2
ATP6AP1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1325,168,116 - 25,191,547 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl325,169,058 - 25,436,510 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha326,400,098 - 26,428,076 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0325,079,575 - 25,104,099 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl325,081,649 - 25,121,084 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1325,033,820 - 25,058,324 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0324,998,118 - 25,026,084 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0325,278,838 - 25,306,811 (-)NCBIUU_Cfam_GSD_1.0
Atp6ap1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213181,063,440 - 181,100,438 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364691,539,985 - 1,562,286 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6AP1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1290,680,982 - 90,741,469 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2292,677,083 - 92,720,183 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6AP1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1476,416,536 - 76,440,185 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl476,416,689 - 76,441,754 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604925,274,581 - 25,384,841 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6ap1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247432,674,161 - 2,696,968 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp6ap1l
517 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:43
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000044237
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777223319447Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat

Markers in Region
RH142789  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2222,037,624 - 22,037,769 (+)MAPPERmRatBN7.2
Rnor_6.0219,781,470 - 19,781,614NCBIRnor6.0
Rnor_5.0219,657,708 - 19,657,852UniSTSRnor5.0
RGSC_v3.4221,004,595 - 21,004,739UniSTSRGSC3.4
Celera218,165,726 - 18,165,870UniSTS
Cytogenetic Map2q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 34 8 8 3 8 15 11
Low 9 34 33 8 33 1 1 59 10 22 10 1
Below cutoff 2 15 8 7 10 19 8 1 7

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000044237   ⟹   ENSRNOP00000050073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl222,037,563 - 22,065,038 (-)Ensembl
Rnor_6.0 Ensembl219,781,408 - 19,808,937 (-)Ensembl
RefSeq Acc Id: NM_001191843   ⟹   NP_001178772
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,772,724 - 23,800,220 (-)NCBI
mRatBN7.2222,037,542 - 22,065,038 (-)NCBI
Rnor_6.0219,781,387 - 19,808,937 (-)NCBI
Rnor_5.0219,657,613 - 19,696,546 (-)NCBI
Celera218,165,643 - 18,192,478 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039102510   ⟹   XP_038958438
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,772,724 - 23,813,384 (-)NCBI
mRatBN7.2222,037,542 - 22,076,246 (-)NCBI
RefSeq Acc Id: XM_039102511   ⟹   XP_038958439
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,772,724 - 23,813,384 (-)NCBI
mRatBN7.2222,037,542 - 22,076,246 (-)NCBI
RefSeq Acc Id: XM_039102512   ⟹   XP_038958440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,772,724 - 23,814,266 (-)NCBI
mRatBN7.2222,037,542 - 22,079,062 (-)NCBI
RefSeq Acc Id: XM_039102513   ⟹   XP_038958441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,772,724 - 23,813,384 (-)NCBI
mRatBN7.2222,037,542 - 22,076,246 (-)NCBI
RefSeq Acc Id: XM_039102514   ⟹   XP_038958442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,772,724 - 23,803,728 (-)NCBI
mRatBN7.2222,037,542 - 22,068,554 (-)NCBI
RefSeq Acc Id: XM_039102515   ⟹   XP_038958443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,772,724 - 23,814,440 (-)NCBI
mRatBN7.2222,037,542 - 22,079,122 (-)NCBI
RefSeq Acc Id: XM_039102516   ⟹   XP_038958444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,772,724 - 23,813,384 (-)NCBI
mRatBN7.2222,037,542 - 22,076,246 (-)NCBI
RefSeq Acc Id: XM_039102517   ⟹   XP_038958445
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,772,724 - 23,813,384 (-)NCBI
mRatBN7.2222,037,542 - 22,076,246 (-)NCBI
RefSeq Acc Id: XM_039102518   ⟹   XP_038958446
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,772,724 - 23,814,267 (-)NCBI
mRatBN7.2222,037,542 - 22,079,089 (-)NCBI
RefSeq Acc Id: XM_039102520   ⟹   XP_038958448
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,772,724 - 23,805,540 (-)NCBI
mRatBN7.2222,037,542 - 22,068,828 (-)NCBI
RefSeq Acc Id: XM_039102521   ⟹   XP_038958449
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,772,724 - 23,814,913 (-)NCBI
mRatBN7.2222,037,542 - 22,079,376 (-)NCBI
RefSeq Acc Id: XM_039102522   ⟹   XP_038958450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,772,724 - 23,813,364 (-)NCBI
mRatBN7.2222,037,542 - 22,076,244 (-)NCBI
RefSeq Acc Id: XM_063281999   ⟹   XP_063138069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,772,724 - 23,813,384 (-)NCBI
RefSeq Acc Id: XM_063282000   ⟹   XP_063138070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,772,724 - 23,814,231 (-)NCBI
RefSeq Acc Id: XM_063282001   ⟹   XP_063138071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8223,772,724 - 23,813,397 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001178772   ⟸   NM_001191843
- Peptide Label: precursor
- UniProtKB: D3ZA00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000050073   ⟸   ENSRNOT00000044237
RefSeq Acc Id: XP_038958449   ⟸   XM_039102521
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038958443   ⟸   XM_039102515
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958446   ⟸   XM_039102518
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958440   ⟸   XM_039102512
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958444   ⟸   XM_039102516
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958441   ⟸   XM_039102513
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958445   ⟸   XM_039102517
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958438   ⟸   XM_039102510
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958439   ⟸   XM_039102511
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958450   ⟸   XM_039102522
- Peptide Label: isoform X4
- UniProtKB: D3ZA00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958448   ⟸   XM_039102520
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958442   ⟸   XM_039102514
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063138070   ⟸   XM_063282000
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063138071   ⟸   XM_063282001
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063138069   ⟸   XM_063281999
- Peptide Label: isoform X1
Protein Domains
V-type proton ATPase subunit S1 luminal   V-type proton ATPase subunit S1/VOA1 transmembrane

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZA00-F1-model_v2 AlphaFold D3ZA00 1-336 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564936 AgrOrtholog
BioCyc Gene G2FUF-54897 BioCyc
Ensembl Genes ENSRNOG00000040201 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044237 ENTREZGENE
  ENSRNOT00000044237.5 UniProtKB/TrEMBL
Gene3D-CATH 2.40.160.110 UniProtKB/TrEMBL
InterPro ATPase_V1-cplx_s1su UniProtKB/TrEMBL
  VAS1/VOA1_TM UniProtKB/TrEMBL
  VAS1_LD UniProtKB/TrEMBL
KEGG Report rno:361875 UniProtKB/TrEMBL
NCBI Gene 361875 ENTREZGENE
PANTHER ATPase_V1_S1 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT S1-LIKE PROTEIN UniProtKB/TrEMBL
Pfam Ac45-VOA1_TM UniProtKB/TrEMBL
  ATP-synt_S1 UniProtKB/TrEMBL
PhenoGen Atp6ap1l PhenoGen
RatGTEx ENSRNOG00000040201 RatGTEx
UniProt D3ZA00 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Atp6ap1l  ATPase H+ transporting accessory protein 1 like  Atp6ap1l  ATPase, H+ transporting, lysosomal accessory protein 1-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-06-12 Atp6ap1l  ATPase, H+ transporting, lysosomal accessory protein 1-like  RGD1564936  similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1564936  similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit)   RGD1564936_predicted  similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-10 RGD1564936_predicted  similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit) (predicted)    similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit) (V-ATPase S1 accessory protein) (V-ATPase Ac45 subunit) (XAP-3) (predicted)  Name updated 1299863 APPROVED
2006-03-07 RGD1564936_predicted  similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit) (V-ATPase S1 accessory protein) (V-ATPase Ac45 subunit) (XAP-3) (predicted)  LOC361875  similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit) (V-ATPase S1 accessory protein) (V-ATPase Ac45 subunit) (XAP-3)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC361875  similar to Vacuolar ATP synthase subunit S1 precursor (V-ATPase S1 subunit) (V-ATPase S1 accessory protein) (V-ATPase Ac45 subunit) (XAP-3)      Symbol and Name status set to provisional 70820 PROVISIONAL