Rpl37a-ps5 (ribosomal protein L37A, pseudogene 5) - Rat Genome Database

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Gene: Rpl37a-ps5 (ribosomal protein L37A, pseudogene 5) Rattus norvegicus
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Symbol: Rpl37a-ps5
Name: ribosomal protein L37A, pseudogene 5
RGD ID: 1564849
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL37AP8 (ribosomal protein L37a pseudogene 8); INTERACTS WITH bisphenol A (ortholog); paracetamol (ortholog).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: AABR07045454.1; LOC294530; RGD1564849; similar to 60S ribosomal protein L37a
RGD Orthologs
Human
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82048,540,448 - 48,540,812 (+)NCBIGRCr8
mRatBN7.22046,958,306 - 46,958,670 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2046,958,335 - 46,958,664 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2048,672,937 - 48,673,301 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02048,322,948 - 48,323,312 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02049,006,772 - 49,007,136 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02048,212,349 - 48,212,713 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2048,212,378 - 48,212,668 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.02049,871,105 - 49,871,469 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42047,379,462 - 47,379,791 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2053,029,758 - 53,030,122 (-)NCBICelera
Cytogenetic Map20q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (ISO)
paracetamol  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline

Genomics

Comparative Map Data
Rpl37a-ps5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82048,540,448 - 48,540,812 (+)NCBIGRCr8
mRatBN7.22046,958,306 - 46,958,670 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2046,958,335 - 46,958,664 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2048,672,937 - 48,673,301 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02048,322,948 - 48,323,312 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02049,006,772 - 49,007,136 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02048,212,349 - 48,212,713 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2048,212,378 - 48,212,668 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.02049,871,105 - 49,871,469 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42047,379,462 - 47,379,791 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2053,029,758 - 53,030,122 (-)NCBICelera
Cytogenetic Map20q13NCBI
RPL37AP8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811111,889,136 - 111,889,822 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11111,889,199 - 111,889,474 (-)EnsemblGRCh38hg38GRCh38
GRCh3711111,759,860 - 111,760,546 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611111,265,133 - 111,265,339 (-)NCBINCBI36Build 36hg18NCBI36
Celera11108,913,083 - 108,913,767 (-)NCBICelera
Cytogenetic Map11q23.1NCBI
HuRef11107,683,783 - 107,684,467 (-)NCBIHuRef
CHM1_111111,642,946 - 111,643,630 (-)NCBICHM1_1
T2T-CHM13v2.011111,899,381 - 111,900,067 (-)NCBIT2T-CHM13v2.0
LOC102154393
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1580,212,065 - 80,213,750 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha580,201,544 - 80,201,822 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0580,643,852 - 80,644,130 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1580,471,881 - 80,472,159 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0580,160,175 - 80,160,453 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0580,794,225 - 80,794,503 (+)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_028298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000040519   ⟹   ENSRNOP00000042454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2046,958,335 - 46,958,664 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000042454.4
RefSeq Acc Id: ENSRNOP00000042454   ⟸   ENSRNOT00000040519

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A829-F1-model_v2 AlphaFold D4A829 1-97 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564849 AgrOrtholog
BioCyc Gene G2FUF-3343 BioCyc
Ensembl Genes ENSRNOG00000032964 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040519.4 UniProtKB/TrEMBL
Gene3D-CATH 2.20.25.30 UniProtKB/TrEMBL
InterPro Ribosomal_L37ae UniProtKB/TrEMBL
  Ribosomal_L37ae/L37e UniProtKB/TrEMBL
  Ribosomal_zn-bd UniProtKB/TrEMBL
NCBI Gene 294530 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L37A-LIKE PROTEIN-RELATED UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L43 UniProtKB/TrEMBL
Pfam Ribosomal_L37ae UniProtKB/TrEMBL
PhenoGen Rpl37a-ps5 PhenoGen
RatGTEx ENSRNOG00000032964 RatGTEx
Superfamily-SCOP SSF57829 UniProtKB/TrEMBL
UniProt D4A829_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Rpl37a-ps5  ribosomal protein L37A, pseudogene 5  RGD1564849  similar to 60S ribosomal protein L37a  Symbol and Name Changed 1299863 APPROVED
2022-06-02 RGD1564849  similar to 60S ribosomal protein L37a  AABR07045454.1    Data merged from RGD:15003996 737654 PROVISIONAL
2019-11-08 AABR07045454.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2008-04-30 RGD1564849  similar to 60S ribosomal protein L37a   RGD1564849_predicted  similar to 60S ribosomal protein L37a (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564849_predicted  similar to 60S ribosomal protein L37a (predicted)  LOC294530  similar to 60S ribosomal protein L37a  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC294530  similar to 60S ribosomal protein L37a      Symbol and Name status set to provisional 70820 PROVISIONAL