Ubp1 (upstream binding protein 1) - Rat Genome Database

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Gene: Ubp1 (upstream binding protein 1) Rattus norvegicus
Analyze
Symbol: Ubp1
Name: upstream binding protein 1
RGD ID: 1564700
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of viral transcription and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within angiogenesis. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in nucleus. Orthologous to human UBP1 (upstream binding protein 1); INTERACTS WITH 2,3,4,7,8-Pentachlorodibenzofuran; bisphenol A; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC301038; RGD1564700; similar to CP2B; upstream binding protein 1 (LBP-1a); upstream-binding protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88122,748,005 - 122,793,824 (+)NCBIGRCr8
mRatBN7.28113,869,771 - 113,915,625 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8113,869,979 - 113,915,625 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8119,486,364 - 119,531,809 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08117,685,631 - 117,731,076 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08115,528,403 - 115,573,854 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,196,576 - 122,241,368 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,197,027 - 122,240,357 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08121,510,557 - 121,554,898 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48118,574,348 - 118,618,657 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8113,117,821 - 113,162,107 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:15282311  


Genomics

Comparative Map Data
Ubp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88122,748,005 - 122,793,824 (+)NCBIGRCr8
mRatBN7.28113,869,771 - 113,915,625 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8113,869,979 - 113,915,625 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8119,486,364 - 119,531,809 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08117,685,631 - 117,731,076 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08115,528,403 - 115,573,854 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,196,576 - 122,241,368 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,197,027 - 122,240,357 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08121,510,557 - 121,554,898 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48118,574,348 - 118,618,657 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8113,117,821 - 113,162,107 (+)NCBICelera
Cytogenetic Map8q32NCBI
UBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38333,388,336 - 33,441,399 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl333,388,336 - 33,441,371 (-)EnsemblGRCh38hg38GRCh38
GRCh37333,429,828 - 33,481,897 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36333,404,835 - 33,456,874 (-)NCBINCBI36Build 36hg18NCBI36
Build 34333,404,834 - 33,456,874NCBI
Celera333,373,357 - 33,425,407 (-)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef333,370,390 - 33,422,369 (-)NCBIHuRef
CHM1_1333,379,810 - 33,431,856 (-)NCBICHM1_1
T2T-CHM13v2.0333,390,109 - 33,443,172 (-)NCBIT2T-CHM13v2.0
Ubp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399113,760,002 - 113,807,095 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9113,760,002 - 113,806,270 (+)EnsemblGRCm39 Ensembl
GRCm389113,930,939 - 113,978,027 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9113,930,934 - 113,977,202 (+)EnsemblGRCm38mm10GRCm38
MGSCv379113,840,052 - 113,886,320 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369113,780,350 - 113,825,700 (+)NCBIMGSCv36mm8
Celera9113,640,161 - 113,686,339 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map964.14NCBI
Ubp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955421618,696 - 681,994 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955421618,696 - 681,994 (-)NCBIChiLan1.0ChiLan1.0
UBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2233,367,664 - 33,419,753 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1333,372,429 - 33,424,517 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0333,310,506 - 33,362,589 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1333,611,712 - 33,663,175 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl333,611,712 - 33,663,175 (-)Ensemblpanpan1.1panPan2
UBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1233,445,730 - 3,498,242 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl233,444,758 - 3,497,263 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,489,891 - 3,542,348 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0233,700,481 - 3,751,218 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl233,705,733 - 3,750,132 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,540,526 - 3,592,947 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,667,423 - 3,719,978 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0233,641,049 - 3,693,509 (+)NCBIUU_Cfam_GSD_1.0
Ubp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118190,520,630 - 190,573,197 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647323,657,262 - 23,712,011 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647323,658,243 - 23,711,768 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1319,203,954 - 19,276,637 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11319,203,965 - 19,276,392 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21320,785,120 - 20,831,156 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,880,650 - 77,933,829 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1577,882,632 - 77,933,864 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604151,262,920 - 51,316,998 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478811,350,243 - 11,409,942 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ubp1
106 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:363
Count of miRNA genes:217
Interacting mature miRNAs:258
Transcripts:ENSRNOT00000013050
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
1599689Iddm24Insulin dependent diabetes mellitus QTL 244.720.001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)8112834440118649220Rat

Markers in Region
RH130765  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28113,911,167 - 113,911,376 (+)MAPPERmRatBN7.2
Rnor_6.08122,236,913 - 122,237,121NCBIRnor6.0
Rnor_5.08121,550,443 - 121,550,651UniSTSRnor5.0
RGSC_v3.48118,615,213 - 118,615,421UniSTSRGSC3.4
Celera8113,158,663 - 113,158,871UniSTS
RH 3.4 Map81200.8UniSTS
Cytogenetic Map8q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 38 57 41 19 41 3 6 74 35 38 11 3
Low 5 5 5 3 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_594129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BQ780402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM039161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM064075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FN798828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000013050   ⟹   ENSRNOP00000013050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8113,870,158 - 113,915,625 (+)Ensembl
Rnor_6.0 Ensembl8122,197,027 - 122,240,357 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112819   ⟹   ENSRNOP00000086807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8113,869,979 - 113,915,625 (+)Ensembl
RefSeq Acc Id: NM_001191819   ⟹   NP_001178748
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,748,361 - 122,793,824 (+)NCBI
mRatBN7.28113,870,158 - 113,915,625 (+)NCBI
Rnor_6.08122,197,027 - 122,240,357 (+)NCBI
Rnor_5.08121,510,557 - 121,554,898 (+)NCBI
Celera8113,117,821 - 113,162,107 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243962   ⟹   XP_006244024
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,748,069 - 122,793,824 (+)NCBI
mRatBN7.28113,869,997 - 113,915,623 (+)NCBI
Rnor_6.08122,197,034 - 122,241,368 (+)NCBI
Rnor_5.08121,510,557 - 121,554,898 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081288   ⟹   XP_038937216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,748,069 - 122,787,497 (+)NCBI
mRatBN7.28113,869,996 - 113,909,298 (+)NCBI
RefSeq Acc Id: XM_039081289   ⟹   XP_038937217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,748,005 - 122,793,824 (+)NCBI
mRatBN7.28113,869,783 - 113,915,623 (+)NCBI
RefSeq Acc Id: XM_039081290   ⟹   XP_038937218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,748,005 - 122,793,824 (+)NCBI
mRatBN7.28113,869,780 - 113,915,623 (+)NCBI
RefSeq Acc Id: XM_039081291   ⟹   XP_038937219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,748,005 - 122,793,824 (+)NCBI
mRatBN7.28113,869,771 - 113,915,623 (+)NCBI
RefSeq Acc Id: XM_039081292   ⟹   XP_038937220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,748,069 - 122,787,489 (+)NCBI
mRatBN7.28113,869,997 - 113,909,294 (+)NCBI
RefSeq Acc Id: XM_039081293   ⟹   XP_038937221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,773,116 - 122,793,824 (+)NCBI
mRatBN7.28113,894,924 - 113,915,623 (+)NCBI
RefSeq Acc Id: XM_063265297   ⟹   XP_063121367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,748,005 - 122,793,824 (+)NCBI
RefSeq Acc Id: XM_063265298   ⟹   XP_063121368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,748,005 - 122,793,824 (+)NCBI
RefSeq Acc Id: XM_063265299   ⟹   XP_063121369
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,748,005 - 122,793,824 (+)NCBI
RefSeq Acc Id: XR_005487800
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,748,069 - 122,787,490 (+)NCBI
mRatBN7.28113,869,996 - 113,909,295 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001178748   ⟸   NM_001191819
- UniProtKB: D4A030 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244024   ⟸   XM_006243962
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GFC7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000013050   ⟸   ENSRNOT00000013050
RefSeq Acc Id: XP_038937219   ⟸   XM_039081291
- Peptide Label: isoform X3
- UniProtKB: D4A030 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937218   ⟸   XM_039081290
- Peptide Label: isoform X3
- UniProtKB: D4A030 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937217   ⟸   XM_039081289
- Peptide Label: isoform X3
- UniProtKB: D4A030 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937216   ⟸   XM_039081288
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GFC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937220   ⟸   XM_039081292
- Peptide Label: isoform X4
- UniProtKB: A0A8I6GFC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937221   ⟸   XM_039081293
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000086807   ⟸   ENSRNOT00000112819
RefSeq Acc Id: XP_063121367   ⟸   XM_063265297
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063121368   ⟸   XM_063265298
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063121369   ⟸   XM_063265299
- Peptide Label: isoform X5
Protein Domains
Grh/CP2 DB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A030-F1-model_v2 AlphaFold D4A030 1-540 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696350
Promoter ID:EPDNEW_R6875
Type:single initiation site
Name:Ubp1_1
Description:upstream binding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08122,197,075 - 122,197,135EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564700 AgrOrtholog
BioCyc Gene G2FUF-28936 BioCyc
Ensembl Genes ENSRNOG00000009729 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013050.7 UniProtKB/TrEMBL
  ENSRNOT00000112819 ENTREZGENE
  ENSRNOT00000112819.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
InterPro CP2 UniProtKB/TrEMBL
  SAM/pointed UniProtKB/TrEMBL
  SAM_3 UniProtKB/TrEMBL
  TF_CP2-like UniProtKB/TrEMBL
  Ubp1_SAM UniProtKB/TrEMBL
NCBI Gene 301038 ENTREZGENE
PANTHER TRANSCRIPTION FACTOR CP2 UniProtKB/TrEMBL
  UPSTREAM-BINDING PROTEIN 1 UniProtKB/TrEMBL
Pfam CP2 UniProtKB/TrEMBL
  SAM_3 UniProtKB/TrEMBL
PhenoGen Ubp1 PhenoGen
PROSITE GRH_CP2_DB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009729 RatGTEx
Superfamily-SCOP SAM_homology UniProtKB/TrEMBL
UniProt A0A8I6GFC7 ENTREZGENE, UniProtKB/TrEMBL
  D4A030 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-16 Ubp1  upstream binding protein 1  Ubp1  upstream binding protein 1 (LBP-1a)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Ubp1  upstream binding protein 1 (LBP-1a)  Ubp1  upstream binding protein 1   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ubp1  upstream binding protein 1   Ubp1_predicted  upstream binding protein 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Ubp1_predicted  upstream binding protein 1 (predicted)  RGD1564700_predicted  similar to CP2B (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1564700_predicted  similar to CP2B (predicted)  LOC301038  similar to CP2B  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC301038  similar to CP2B      Symbol and Name status set to provisional 70820 PROVISIONAL