Polr2l-ps1 (RNA polymerase II, I and III subunit L, pseudogene 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Polr2l-ps1 (RNA polymerase II, I and III subunit L, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Polr2l-ps1
Name: RNA polymerase II, I and III subunit L, pseudogene 1
RGD ID: 1564685
Description: Orthologous to human POLR2L (RNA polymerase II, I and III subunit L).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: AABR07042789.1; Ab1-108-like; LOC100360929; LOC502186; Polr2l; polymerase (RNA) II (DNA directed) polypeptide L; polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa; polymerase (RNA) II (DNA directed) polypeptide L, pseudogene 1; RGD1564685; similar to Ab1-108
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Polr2l  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8198,341,713 - 8,342,080 (-)NCBIGRCr8
mRatBN7.2198,335,547 - 8,335,914 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl198,335,702 - 8,335,905 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx198,289,931 - 8,290,298 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,056,766 - 9,057,133 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0198,359,670 - 8,360,037 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0198,943,599 - 8,943,966 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl198,943,753 - 8,943,956 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0198,932,331 - 8,932,698 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4198,701,959 - 8,702,326 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera198,269,599 - 8,269,966 (-)NCBICelera
Cytogenetic Map19p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Polr2l-ps1
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat

Markers in Region
AU047044  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2198,337,233 - 8,337,442 (+)MAPPERmRatBN7.2
Rnor_6.0198,945,285 - 8,945,491NCBIRnor6.0
Rnor_5.0198,934,017 - 8,934,223UniSTSRnor5.0
RGSC_v3.4198,703,645 - 8,703,851UniSTSRGSC3.4
Celera198,271,285 - 8,271,491UniSTS
Cytogenetic Map19p13UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_009313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000030597   ⟹   ENSRNOP00000071181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl198,335,702 - 8,335,905 (-)Ensembl
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZT9-F1-model_v2 AlphaFold A0A0G2JZT9 1-67 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564685 AgrOrtholog
BioCyc Gene G2FUF-6567 BioCyc
Ensembl Genes ENSRNOG00000023805 Ensembl
NCBI Gene 502186 ENTREZGENE
PhenoGen Polr2l-ps1 PhenoGen
RatGTEx ENSRNOG00000023805 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-13 Polr2l-ps1  RNA polymerase II, I and III subunit L, pseudogene 1  Polr2l-ps1  polymerase (RNA) II (DNA directed) polypeptide L, pseudogene 1  Name changed 629549 APPROVED
2022-06-02 Polr2l-ps1  polymerase (RNA) II (DNA directed) polypeptide L, pseudogene 1  AABR07042789.1    Data merged from RGD:15003572 737654 PROVISIONAL
2019-11-08 AABR07042789.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2015-07-29 Polr2l-ps1  polymerase (RNA) II (DNA directed) polypeptide L, pseudogene 1  LOC100360929  Ab1-108-like  Data merged from RGD:2321130 737654 PROVISIONAL
2010-05-05 LOC100360929  Ab1-108-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2009-01-09 Polr2l-ps1  polymerase (RNA) II (DNA directed) polypeptide L, pseudogene 1  Polr2l  polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa  Symbol and Name updated 1299863 APPROVED
2008-09-24 Polr2l  polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa  Polr2l  polymerase (RNA) II (DNA directed) polypeptide L  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Polr2l  polymerase (RNA) II (DNA directed) polypeptide L  RGD1564685_predicted  similar to Ab1-108 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 RGD1564685_predicted  similar to Ab1-108 (predicted)  LOC682164  similar to DNA-directed RNA polymerase II 7.6 kDa polypeptide (RPB10) (RPB7.6) (RPABC5)  Data merged from RGD:1586923 1643240 APPROVED
2006-11-19 LOC682164  similar to DNA-directed RNA polymerase II 7.6 kDa polypeptide (RPB10) (RPB7.6) (RPABC5)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1564685_predicted  similar to Ab1-108 (predicted)  LOC502186  similar to Ab1-108  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC502186  similar to Ab1-108      Symbol and Name status set to provisional 70820 PROVISIONAL