Chchd4l1 (coiled-coil-helix-coiled-coil-helix domain containing 4 like 1) - Rat Genome Database

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Gene: Chchd4l1 (coiled-coil-helix-coiled-coil-helix domain containing 4 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Chchd4l1 (Ensembl: RGD1564534)
Name: coiled-coil-helix-coiled-coil-helix domain containing 4 like 1 (Ensembl:similar to CHCHD4 protein)
RGD ID: 1564534
Description: Predicted to enable protein-disulfide reductase activity. Predicted to be involved in protein import into mitochondrial intermembrane space. Predicted to be located in mitochondrial intermembrane space; INTERACTS WITH dibutyl phthalate.
Type: ncrna (Ensembl: protein-coding)
RefSeq Status: VALIDATED
Previously known as: LOC501576; RGD1564534; similar to CHCHD4 protein
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X62,690,390 - 62,696,524 (+)NCBIGRCr8
mRatBN7.2X58,696,582 - 58,702,716 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX58,696,582 - 58,702,713 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX60,134,164 - 60,140,292 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X63,635,285 - 63,641,413 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X61,186,177 - 61,192,316 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X63,053,031 - 63,059,164 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX63,053,031 - 63,059,164 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X63,642,966 - 63,649,099 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X81,320,312 - 81,326,446 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX59,132,917 - 59,139,051 (+)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:36336032  


Genomics

Variants

.
Variants in Chchd4l1
24 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:399
Count of miRNA genes:224
Interacting mature miRNAs:284
Transcripts:ENSRNOT00000043280
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
70221Bp56Blood pressure QTL 564.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X5704214165612192Rat

Markers in Region
AI179266  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X58,702,517 - 58,702,657 (+)MAPPERmRatBN7.2
Rnor_6.0X63,058,966 - 63,059,105NCBIRnor6.0
Rnor_6.01629,864,108 - 29,864,246NCBIRnor6.0
Rnor_5.01629,725,091 - 29,725,229UniSTSRnor5.0
Rnor_5.0X63,648,901 - 63,649,040UniSTSRnor5.0
CeleraX59,138,853 - 59,138,992UniSTS
Cytogenetic MapXq31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 13
Low 1 7 22 7 16 7 1 1 21 20 8 1
Below cutoff 2 9 7 6 2 6 7 7 21 12 8 3 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000043280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX58,696,582 - 58,702,713 (+)Ensembl
Rnor_6.0 EnsemblX63,053,031 - 63,059,164 (+)Ensembl
RefSeq Acc Id: NR_028321
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X62,690,390 - 62,696,524 (+)NCBI
mRatBN7.2X58,696,582 - 58,702,716 (+)NCBI
Rnor_6.0X63,053,031 - 63,059,164 (+)NCBI
Rnor_5.0X63,642,966 - 63,649,099 (+)NCBI
RGSC_v3.4X81,320,312 - 81,326,446 (+)RGD
CeleraX59,132,917 - 59,139,051 (+)RGD
Sequence:
Protein Sequences
GenBank Protein AAI11406 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000087681.1
Reference Protein Sequences
Protein Domains
CHCH

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2252 BioCyc
Ensembl Genes ENSRNOG00000032038 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043280 ENTREZGENE
  ENSRNOT00000043280.5 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.2900 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7446493 IMAGE-MGC_LOAD
InterPro CHCH UniProtKB/TrEMBL
  CHCHD4 UniProtKB/TrEMBL
MGC_CLONE MGC:125017 IMAGE-MGC_LOAD
NCBI Gene 501576 ENTREZGENE
PANTHER AU015836 PROTEIN UniProtKB/TrEMBL
  PTHR21622 UniProtKB/TrEMBL
Pfam CHCH UniProtKB/TrEMBL
PhenoGen Chchd4l1 PhenoGen
PROSITE CHCH UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032038 RatGTEx
RNAcentral URS000075DEF0 RNACentral
  URS0000AA8E9D RNACentral
UniProt Q0VGA2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Chchd4l1  coiled-coil-helix-coiled-coil-helix domain containing 4 like 1  RGD1564534  similar to CHCHD4 protein  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1564534  similar to CHCHD4 protein   RGD1564534_predicted  similar to CHCHD4 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564534_predicted  similar to CHCHD4 protein (predicted)  LOC501576  similar to CHCHD4 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501576  similar to CHCHD4 protein      Symbol and Name status set to provisional 70820 PROVISIONAL