Tex47 (testis expressed 47) - Rat Genome Database

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Gene: Tex47 (testis expressed 47) Rattus norvegicus
Analyze
Symbol: Tex47
Name: testis expressed 47
RGD ID: 1564345
Description: Orthologous to human TEX47 (testis expressed 47); INTERACTS WITH bisphenol A; aflatoxin B1 (ortholog); chlorpyrifos (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC499993; LOC499993; MGC156771; RGD1564345; similar to RIKEN cDNA 4921511H03; testis-expressed protein 47; uncharacterized protein C7orf62 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8427,598,990 - 27,602,285 (-)NCBIGRCr8
mRatBN7.2426,644,098 - 26,647,393 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl426,599,738 - 26,647,430 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx431,622,424 - 31,625,725 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0427,548,644 - 27,551,945 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0425,939,020 - 25,942,315 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0423,714,674 - 23,719,731 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl423,714,752 - 23,718,047 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0423,643,951 - 23,647,246 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4423,264,704 - 23,267,999 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera422,122,412 - 22,125,707 (-)NCBICelera
Cytogenetic Map4q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Tex47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8427,598,990 - 27,602,285 (-)NCBIGRCr8
mRatBN7.2426,644,098 - 26,647,393 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl426,599,738 - 26,647,430 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx431,622,424 - 31,625,725 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0427,548,644 - 27,551,945 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0425,939,020 - 25,942,315 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0423,714,674 - 23,719,731 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl423,714,752 - 23,718,047 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0423,643,951 - 23,647,246 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4423,264,704 - 23,267,999 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera422,122,412 - 22,125,707 (-)NCBICelera
Cytogenetic Map4q12NCBI
TEX47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38788,794,106 - 88,795,737 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl788,794,106 - 88,795,737 (-)EnsemblGRCh38hg38GRCh38
GRCh37788,423,420 - 88,425,051 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36788,261,357 - 88,262,967 (-)NCBINCBI36Build 36hg18NCBI36
Celera783,128,231 - 83,129,842 (-)NCBICelera
Cytogenetic Map7q21.13NCBI
HuRef783,032,639 - 83,034,250 (-)NCBIHuRef
CHM1_1788,353,468 - 88,355,077 (-)NCBICHM1_1
T2T-CHM13v2.0790,044,741 - 90,046,372 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2787,754,527 - 87,756,138 (-)NCBI
Tex47
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3957,354,106 - 7,368,290 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl57,354,119 - 7,361,491 (+)EnsemblGRCm39 Ensembl
GRCm3857,304,106 - 7,318,290 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl57,304,119 - 7,311,491 (+)EnsemblGRCm38mm10GRCm38
MGSCv3757,304,164 - 7,311,491 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3657,310,170 - 7,317,497 (+)NCBIMGSCv36mm8
Celera57,232,875 - 7,240,202 (+)NCBICelera
Cytogenetic Map5A1NCBI
cM Map53.37NCBI
Tex47
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554326,143,294 - 6,144,841 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554326,143,294 - 6,144,841 (-)NCBIChiLan1.0ChiLan1.0
TEX47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26106,671,987 - 106,676,780 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17154,936,625 - 154,941,419 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0780,786,625 - 80,788,997 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1794,435,772 - 94,437,394 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl794,435,850 - 94,436,611 (-)Ensemblpanpan1.1panPan2
TEX47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11414,743,998 - 14,778,476 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1414,776,683 - 14,777,444 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1414,316,163 - 14,350,626 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01414,554,192 - 14,588,652 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1414,586,876 - 14,587,637 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11414,719,176 - 14,753,623 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01414,439,441 - 14,473,876 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01414,724,693 - 14,759,142 (-)NCBIUU_Cfam_GSD_1.0
Tex47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511827,791,040 - 27,792,627 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936763209,422 - 210,353 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl969,018,248 - 69,019,009 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1969,016,462 - 69,019,241 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2975,412,361 - 75,415,069 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TEX47
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12160,155,161 - 60,158,620 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2160,157,781 - 60,158,542 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604243,968,347 - 43,974,867 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tex47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248094,481,733 - 4,482,493 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248094,481,733 - 4,482,493 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tex47
26 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:87
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000011359
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4127716890Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4127716890Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4127716890Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4129494328Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1358201Gluco12Glucose level QTL121.6adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake (CMO:0000870)4521839229593287Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)42271068534430484Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7
Low 5 5 5 8 8 4
Below cutoff 1 11 4 5 4 8 8 3 2 5 8

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000011359   ⟹   ENSRNOP00000011359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl426,599,738 - 26,647,430 (-)Ensembl
Rnor_6.0 Ensembl423,714,752 - 23,718,047 (-)Ensembl
RefSeq Acc Id: NM_001077681   ⟹   NP_001071149
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8427,598,990 - 27,602,285 (-)NCBI
mRatBN7.2426,644,098 - 26,647,393 (-)NCBI
Rnor_6.0423,714,752 - 23,718,047 (-)NCBI
Rnor_5.0423,643,951 - 23,647,246 (-)NCBI
RGSC_v3.4423,264,704 - 23,267,999 (-)RGD
Celera422,122,412 - 22,125,707 (-)RGD
Sequence:
RefSeq Acc Id: XM_063286466   ⟹   XP_063142536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8427,598,991 - 27,601,622 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001071149 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142536 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A0JPP5 (Get FASTA)   NCBI Sequence Viewer  
  AAI27529 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011359
  ENSRNOP00000011359.2
  ENSRNOP00055026100
  ENSRNOP00060022732
  ENSRNOP00065024059
Reference Protein Sequences
RefSeq Acc Id: NP_001071149   ⟸   NM_001077681
- UniProtKB: A0JPP5 (UniProtKB/Swiss-Prot),   A6K248 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000011359   ⟸   ENSRNOT00000011359
RefSeq Acc Id: XP_063142536   ⟸   XM_063286466
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0JPP5-F1-model_v2 AlphaFold A0JPP5 1-253 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692833
Promoter ID:EPDNEW_R3358
Type:multiple initiation site
Name:Tex47_1
Description:testis expressed 47
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0423,718,069 - 23,718,129EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564345 AgrOrtholog
BioCyc Gene G2FUF-45809 BioCyc
Ensembl Genes ENSRNOG00000008594 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055018909 UniProtKB/Swiss-Prot
  ENSRNOG00060016472 UniProtKB/Swiss-Prot
  ENSRNOG00065018078 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000011359 ENTREZGENE
  ENSRNOT00000011359.5 UniProtKB/Swiss-Prot
  ENSRNOT00055032243 UniProtKB/Swiss-Prot
  ENSRNOT00060028219 UniProtKB/Swiss-Prot
  ENSRNOT00065030276 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7114751 IMAGE-MGC_LOAD
KEGG Report rno:499993 UniProtKB/Swiss-Prot
MGC_CLONE MGC:156771 IMAGE-MGC_LOAD
NCBI Gene 499993 ENTREZGENE
PANTHER TESTIS-EXPRESSED PROTEIN 47 UniProtKB/Swiss-Prot
  TESTIS-EXPRESSED PROTEIN 47 UniProtKB/Swiss-Prot
  TESTIS-EXPRESSED PROTEIN 47 UniProtKB/TrEMBL
  TESTIS-EXPRESSED PROTEIN 47 UniProtKB/TrEMBL
PhenoGen Tex47 PhenoGen
RatGTEx ENSRNOG00000008594 RatGTEx
  ENSRNOG00055018909 RatGTEx
  ENSRNOG00060016472 RatGTEx
  ENSRNOG00065018078 RatGTEx
UniProt A0JPP5 ENTREZGENE
  A6K248 ENTREZGENE, UniProtKB/TrEMBL
  TEX47_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-27 Tex47  testis expressed 47  RGD1564345  similar to RIKEN cDNA 4921511H03  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1564345  similar to RIKEN cDNA 4921511H03   RGD1564345_predicted  similar to RIKEN cDNA 4921511H03 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564345_predicted  similar to RIKEN cDNA 4921511H03 (predicted)  LOC499993  similar to RIKEN cDNA 4921511H03  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499993  similar to RIKEN cDNA 4921511H03      Symbol and Name status set to provisional 70820 PROVISIONAL