Wdfy4 (WDFY family member 4) - Rat Genome Database

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Gene: Wdfy4 (WDFY family member 4) Rattus norvegicus
Analyze
Symbol: Wdfy4
Name: WDFY family member 4
RGD ID: 1564142
Description: Predicted to be involved in antigen processing and presentation. Predicted to act upstream of or within with a positive effect on CD8-positive, alpha-beta T cell activation. Predicted to act upstream of or within cellular response to virus. Orthologous to human WDFY4 (WDFY family member 4); INTERACTS WITH atrazine; bisphenol A; Cuprizon.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC498582; RGD1564142; similar to chromosome 10 open reading frame 64; WD repeat- and FYVE domain-containing protein 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8168,228,147 - 8,456,777 (-)NCBIGRCr8
mRatBN7.2168,221,853 - 8,450,494 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl168,221,719 - 8,450,491 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0169,194,446 - 9,430,764 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl169,194,424 - 9,430,743 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01611,157,412 - 11,391,121 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4168,484,513 - 8,707,957 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera166,784,539 - 6,984,311 (+)NCBICelera
Cytogenetic Map16p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:30409884  


Genomics

Comparative Map Data
Wdfy4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8168,228,147 - 8,456,777 (-)NCBIGRCr8
mRatBN7.2168,221,853 - 8,450,494 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl168,221,719 - 8,450,491 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0169,194,446 - 9,430,764 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl169,194,424 - 9,430,743 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01611,157,412 - 11,391,121 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4168,484,513 - 8,707,957 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera166,784,539 - 6,984,311 (+)NCBICelera
Cytogenetic Map16p16NCBI
WDFY4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381048,684,873 - 48,982,956 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1048,684,873 - 48,982,956 (+)EnsemblGRCh38hg38GRCh38
GRCh371049,892,918 - 50,191,001 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361049,638,068 - 49,861,006 (+)NCBINCBI36Build 36hg18NCBI36
Celera1043,479,368 - 43,776,620 (+)NCBICelera
Cytogenetic Map10q11.23NCBI
HuRef1044,158,995 - 44,455,857 (+)NCBIHuRef
CHM1_11050,175,325 - 50,472,616 (+)NCBICHM1_1
T2T-CHM13v2.01049,534,432 - 49,832,184 (+)NCBIT2T-CHM13v2.0
Wdfy4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391432,681,504 - 32,915,809 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1432,681,504 - 32,907,465 (-)EnsemblGRCm39 Ensembl
GRCm381432,959,547 - 33,193,855 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1432,959,547 - 33,185,508 (-)EnsemblGRCm38mm10GRCm38
MGSCv371433,772,733 - 33,998,252 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361430,564,534 - 30,566,185 (-)NCBIMGSCv36mm8
Celera1429,219,228 - 29,445,431 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.44NCBI
Wdfy4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555561,177,117 - 1,421,228 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555561,178,970 - 1,421,139 (-)NCBIChiLan1.0ChiLan1.0
WDFY4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2860,950,509 - 61,250,879 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11060,955,868 - 61,255,274 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01045,262,213 - 45,560,401 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
WDFY4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.128614,388 - 900,855 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl28613,602 - 900,850 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha28843,117 - 1,129,599 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.028790,158 - 1,076,647 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl28790,228 - 1,076,645 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.128589,286 - 875,741 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.028630,396 - 918,966 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.028755,700 - 1,042,196 (+)NCBIUU_Cfam_GSD_1.0
Wdfy4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721380,059,548 - 80,334,322 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367281,262,771 - 1,503,804 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367281,262,433 - 1,503,805 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDFY4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1489,353,443 - 89,632,695 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11489,353,362 - 89,632,722 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21497,147,400 - 97,427,021 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDFY4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1942,814,606 - 43,111,161 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660482,576,099 - 2,872,143 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdfy4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624928943,864 - 1,221,243 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624928943,547 - 1,243,954 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdfy4
2050 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:49
Interacting mature miRNAs:52
Transcripts:ENSRNOT00000043811
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)16285170915884239Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760916039848Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat

Markers in Region
D16Rat38  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2168,336,147 - 8,336,378 (+)MAPPERmRatBN7.2
mRatBN7.2168,336,147 - 8,336,281 (+)MAPPERmRatBN7.2
Rnor_6.0169,316,324 - 9,316,554NCBIRnor6.0
Rnor_6.0169,316,324 - 9,316,457NCBIRnor6.0
Rnor_5.01611,276,717 - 11,276,850UniSTSRnor5.0
Rnor_5.01611,276,717 - 11,276,947UniSTSRnor5.0
RGSC_v3.4168,612,391 - 8,612,524UniSTSRGSC3.4
RGSC_v3.4168,612,390 - 8,612,621RGDRGSC3.4
RGSC_v3.4168,612,391 - 8,612,621UniSTSRGSC3.4
RGSC_v3.1168,612,389 - 8,612,619RGD
Celera166,869,813 - 6,870,043UniSTS
Celera166,869,910 - 6,870,043UniSTS
RH 3.4 Map1682.4RGD
RH 3.4 Map1682.4UniSTS
RH 2.0 Map1637.4RGD
SHRSP x BN Map163.4699RGD
FHH x ACI Map165.3399RGD
Cytogenetic Map16p16UniSTS
RH133515  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2168,277,845 - 8,278,064 (+)MAPPERmRatBN7.2
Rnor_6.0169,259,134 - 9,259,352NCBIRnor6.0
Rnor_5.01611,219,527 - 11,219,745UniSTSRnor5.0
RGSC_v3.4168,554,688 - 8,554,906UniSTSRGSC3.4
Celera166,927,882 - 6,928,100UniSTS
RH 3.4 Map1682.3UniSTS
Cytogenetic Map16p16UniSTS
20.MMHAP82FRG8.seq  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2168,302,181 - 8,302,357 (+)MAPPERmRatBN7.2
Rnor_6.0169,283,470 - 9,283,645NCBIRnor6.0
Rnor_5.01611,243,863 - 11,244,038UniSTSRnor5.0
RGSC_v3.4168,579,026 - 8,579,201UniSTSRGSC3.4
Celera166,903,829 - 6,904,004UniSTS
Cytogenetic Map16p16UniSTS
RH131968  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2168,221,894 - 8,222,061 (+)MAPPERmRatBN7.2
Rnor_6.0169,194,488 - 9,194,654NCBIRnor6.0
Rnor_5.01611,157,454 - 11,157,620UniSTSRnor5.0
RGSC_v3.4168,484,550 - 8,484,716UniSTSRGSC3.4
Celera166,984,103 - 6,984,269UniSTS
RH 3.4 Map1681.7UniSTS
Cytogenetic Map16p16UniSTS
BM389240  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2168,221,969 - 8,222,155 (+)MAPPERmRatBN7.2
Rnor_6.0169,194,563 - 9,194,748NCBIRnor6.0
Rnor_5.01611,157,529 - 11,157,714UniSTSRnor5.0
RGSC_v3.4168,484,625 - 8,484,810UniSTSRGSC3.4
Celera166,984,009 - 6,984,194UniSTS
RH 3.4 Map1682.5UniSTS
Cytogenetic Map16p16UniSTS
AU049752  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2168,263,357 - 8,263,625 (+)MAPPERmRatBN7.2
mRatBN7.21234,560,676 - 234,560,723 (+)MAPPERmRatBN7.2
Rnor_6.0169,244,838 - 9,245,105NCBIRnor6.0
Rnor_6.0169,244,838 - 9,245,189NCBIRnor6.0
Rnor_5.01611,205,231 - 11,205,582UniSTSRnor5.0
Rnor_5.01611,205,231 - 11,205,498UniSTSRnor5.0
RGSC_v3.4168,540,253 - 8,540,520UniSTSRGSC3.4
Celera166,942,338 - 6,942,651UniSTS
Cytogenetic Map16p16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 8 19 1 8
Low 1 43 49 41 41 8 8 20 17 30 3 8
Below cutoff 3 54 18 10

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000043811   ⟹   ENSRNOP00000042082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl168,221,719 - 8,450,491 (-)Ensembl
Rnor_6.0 Ensembl169,194,424 - 9,430,743 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100506   ⟹   ENSRNOP00000081102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl168,221,719 - 8,450,491 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118604   ⟹   ENSRNOP00000086747
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl168,221,719 - 8,450,491 (-)Ensembl
RefSeq Acc Id: NM_001427658   ⟹   NP_001414587
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8168,228,147 - 8,456,761 (-)NCBI
RefSeq Acc Id: XM_006252760   ⟹   XP_006252822
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8168,228,147 - 8,444,663 (-)NCBI
mRatBN7.2168,221,853 - 8,438,352 (-)NCBI
Rnor_6.0169,194,446 - 9,418,413 (-)NCBI
Rnor_5.01611,157,412 - 11,391,121 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252762   ⟹   XP_006252824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8168,228,147 - 8,456,777 (-)NCBI
mRatBN7.2168,221,853 - 8,450,494 (-)NCBI
Rnor_6.0169,194,446 - 9,430,764 (-)NCBI
Rnor_5.01611,157,412 - 11,391,121 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095074   ⟹   XP_038951002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8168,228,147 - 8,456,777 (-)NCBI
mRatBN7.2168,221,853 - 8,450,494 (-)NCBI
RefSeq Acc Id: XM_039095075   ⟹   XP_038951003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8168,228,147 - 8,456,777 (-)NCBI
mRatBN7.2168,221,853 - 8,450,494 (-)NCBI
RefSeq Acc Id: XM_039095077   ⟹   XP_038951005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8168,228,147 - 8,456,777 (-)NCBI
mRatBN7.2168,221,853 - 8,450,494 (-)NCBI
RefSeq Acc Id: XM_039095079   ⟹   XP_038951007
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8168,393,136 - 8,456,777 (-)NCBI
mRatBN7.2168,383,846 - 8,450,494 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_006252824   ⟸   XM_006252762
- Peptide Label: isoform X4
- UniProtKB: A0A8I6GFA1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252822   ⟸   XM_006252760
- Peptide Label: isoform X1
- UniProtKB: D4A748 (UniProtKB/TrEMBL),   A0A8I6GFA1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000042082   ⟸   ENSRNOT00000043811
RefSeq Acc Id: XP_038951002   ⟸   XM_039095074
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GFA1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951005   ⟸   XM_039095077
- Peptide Label: isoform X5
- UniProtKB: A0A8I6GFA1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951003   ⟸   XM_039095075
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GFA1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951007   ⟸   XM_039095079
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000081102   ⟸   ENSRNOT00000100506
RefSeq Acc Id: ENSRNOP00000086747   ⟸   ENSRNOT00000118604
RefSeq Acc Id: NP_001414587   ⟸   NM_001427658
Protein Domains
BEACH   BEACH-type PH

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699950
Promoter ID:EPDNEW_R10471
Type:single initiation site
Name:Wdfy4_1
Description:WDFY family member 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0169,430,735 - 9,430,795EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564142 AgrOrtholog
BioCyc Gene G2FUF-12096 BioCyc
Ensembl Genes ENSRNOG00000029662 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043811.6 UniProtKB/TrEMBL
  ENSRNOT00000100506 ENTREZGENE
  ENSRNOT00000100506.1 UniProtKB/TrEMBL
  ENSRNOT00000118604.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1540.10 UniProtKB/TrEMBL
  1.25.10.10 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  BEACH_dom UniProtKB/TrEMBL
  BEACH_dom_sf UniProtKB/TrEMBL
  PH-BEACH_dom UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:498582 UniProtKB/TrEMBL
NCBI Gene 498582 ENTREZGENE
PANTHER BLUE CHEESE UniProtKB/TrEMBL
  WD REPEAT- AND FYVE DOMAIN-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
Pfam Beach UniProtKB/TrEMBL
  PH_BEACH UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PhenoGen Wdfy4 PhenoGen
PROSITE BEACH UniProtKB/TrEMBL
  PH_BEACH UniProtKB/TrEMBL
  WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000029662 RatGTEx
SMART Beach UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
  Beige_BEACH UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
  WD40_like UniProtKB/TrEMBL
UniProt A0A8I5ZUC7_RAT UniProtKB/TrEMBL
  A0A8I6GFA1 ENTREZGENE, UniProtKB/TrEMBL
  D4A748 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-25 Wdfy4  WDFY family member 4  RGD1564142  similar to chromosome 10 open reading frame 64  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1564142  similar to chromosome 10 open reading frame 64   RGD1564142_predicted  similar to chromosome 10 open reading frame 64 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564142_predicted  similar to chromosome 10 open reading frame 64 (predicted)  LOC498582  similar to chromosome 10 open reading frame 64  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498582  similar to chromosome 10 open reading frame 64      Symbol and Name status set to provisional 70820 PROVISIONAL