Garnl3 (GTPase activating Rap/RanGAP domain-like 3) - Rat Genome Database

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Gene: Garnl3 (GTPase activating Rap/RanGAP domain-like 3) Rattus norvegicus
Analyze
Symbol: Garnl3
Name: GTPase activating Rap/RanGAP domain-like 3
RGD ID: 1564019
Description: Predicted to enable GTPase activator activity. Predicted to be involved in regulation of small GTPase mediated signal transduction. Predicted to be active in cytoplasm. Orthologous to human GARNL3 (GTPase activating Rap/RanGAP domain like 3); INTERACTS WITH 3-chloropropane-1,2-diol; 4,4'-sulfonyldiphenol; amphetamine.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GTPase-activating Rap/Ran-GAP domain-like protein 3; LOC499783; RGD1564019; similar to GTPase activating RANGAP domain-like 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,686,388 - 36,830,011 (-)NCBIGRCr8
mRatBN7.2316,288,718 - 16,432,308 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl316,288,719 - 16,430,837 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0312,034,131 - 12,176,591 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl312,034,413 - 12,155,098 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0317,370,764 - 17,464,230 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,976,369 - 12,076,318 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera311,027,567 - 11,168,914 (-)NCBICelera
Cytogenetic Map3p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Garnl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,686,388 - 36,830,011 (-)NCBIGRCr8
mRatBN7.2316,288,718 - 16,432,308 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl316,288,719 - 16,430,837 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0312,034,131 - 12,176,591 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl312,034,413 - 12,155,098 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0317,370,764 - 17,464,230 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,976,369 - 12,076,318 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera311,027,567 - 11,168,914 (-)NCBICelera
Cytogenetic Map3p11NCBI
GARNL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389127,224,613 - 127,393,660 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9127,224,265 - 127,393,660 (+)EnsemblGRCh38hg38GRCh38
GRCh379130,026,178 - 130,155,939 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369129,066,967 - 129,195,649 (+)NCBINCBI36Build 36hg18NCBI36
Build 349127,106,699 - 127,235,380NCBI
Celera9100,681,389 - 100,810,468 (+)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef999,642,408 - 99,771,209 (+)NCBIHuRef
CHM1_19130,177,442 - 130,306,494 (+)NCBICHM1_1
T2T-CHM13v2.09139,431,005 - 139,600,139 (+)NCBIT2T-CHM13v2.0
Garnl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,876,237 - 33,021,871 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,876,236 - 33,021,666 (-)EnsemblGRCm39 Ensembl
GRCm38232,986,225 - 33,131,859 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,986,224 - 33,131,654 (-)EnsemblGRCm38mm10GRCm38
MGSCv37232,841,886 - 32,942,724 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36232,808,375 - 32,909,213 (-)NCBIMGSCv36mm8
Celera232,693,353 - 32,794,303 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
Garnl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554191,190,344 - 1,332,553 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554191,190,059 - 1,332,553 (-)NCBIChiLan1.0ChiLan1.0
GARNL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,960,249 - 12,130,724 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1911,962,596 - 12,133,074 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0998,343,954 - 98,514,381 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19126,998,418 - 127,168,056 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9127,038,457 - 127,168,056 (+)Ensemblpanpan1.1panPan2
GARNL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,931,995 - 56,078,521 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,932,016 - 56,078,391 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha955,135,764 - 55,282,398 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0956,853,507 - 57,000,577 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,853,514 - 57,000,891 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1955,613,247 - 55,760,021 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,928,572 - 56,075,173 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0956,019,498 - 56,166,262 (-)NCBIUU_Cfam_GSD_1.0
Garnl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947195,237,098 - 195,384,304 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648715,005,575 - 15,152,953 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648715,017,587 - 15,151,647 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GARNL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1267,772,347 - 267,923,390 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11267,772,408 - 267,922,731 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21301,693,696 - 301,833,904 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GARNL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11210,734,969 - 10,911,786 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1210,734,798 - 10,911,816 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660795,305,259 - 5,480,301 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Garnl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247608,069,606 - 8,235,443 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247608,069,321 - 8,235,409 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Garnl3
954 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:37
Interacting mature miRNAs:42
Transcripts:ENSRNOT00000032078, ENSRNOT00000032897
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat

Markers in Region
BF390955  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2316,317,516 - 16,317,735 (+)MAPPERmRatBN7.2
Rnor_6.0312,062,854 - 12,063,072NCBIRnor6.0
Rnor_5.0317,398,729 - 17,398,947UniSTSRnor5.0
RGSC_v3.4312,006,108 - 12,006,326UniSTSRGSC3.4
Celera311,056,377 - 11,056,595UniSTS
RH 3.4 Map373.1UniSTS
Cytogenetic Map3p11UniSTS
RH128973  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2316,288,806 - 16,288,992 (+)MAPPERmRatBN7.2
Rnor_6.0312,034,220 - 12,034,405NCBIRnor6.0
Rnor_5.0317,370,853 - 17,371,038UniSTSRnor5.0
RGSC_v3.4311,976,458 - 11,976,643UniSTSRGSC3.4
Celera311,027,656 - 11,027,841UniSTS
RH 3.4 Map374.6UniSTS
Cytogenetic Map3p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 50 3 12 1
Low 39 57 41 19 41 7 7 24 32 29 10 7
Below cutoff 4 1 4 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_017592117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide FQ211851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000082696   ⟹   ENSRNOP00000070180
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl316,288,719 - 16,409,520 (-)Ensembl
Rnor_6.0 Ensembl312,034,413 - 12,155,098 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099420   ⟹   ENSRNOP00000082025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl316,288,719 - 16,430,713 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101955   ⟹   ENSRNOP00000094574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl316,288,719 - 16,430,837 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114726   ⟹   ENSRNOP00000086495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl316,288,719 - 16,392,528 (-)Ensembl
RefSeq Acc Id: XM_039106187   ⟹   XP_038962115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,828,679 (-)NCBI
mRatBN7.2316,288,718 - 16,431,004 (-)NCBI
RefSeq Acc Id: XM_039106188   ⟹   XP_038962116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,830,011 (-)NCBI
mRatBN7.2316,288,718 - 16,432,308 (-)NCBI
RefSeq Acc Id: XM_039106195   ⟹   XP_038962123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,792,421 (-)NCBI
mRatBN7.2316,288,718 - 16,395,390 (-)NCBI
RefSeq Acc Id: XM_039106197   ⟹   XP_038962125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,807,203 (-)NCBI
mRatBN7.2316,288,718 - 16,432,180 (-)NCBI
RefSeq Acc Id: XM_039106198   ⟹   XP_038962126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,789,362 (-)NCBI
mRatBN7.2316,288,718 - 16,391,963 (-)NCBI
RefSeq Acc Id: XM_039106200   ⟹   XP_038962128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,807,121 (-)NCBI
mRatBN7.2316,288,718 - 16,430,739 (-)NCBI
RefSeq Acc Id: XM_039106201   ⟹   XP_038962129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,807,207 (-)NCBI
mRatBN7.2316,288,718 - 16,409,508 (-)NCBI
RefSeq Acc Id: XM_039106202   ⟹   XP_038962130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,789,720 (-)NCBI
mRatBN7.2316,288,718 - 16,391,743 (-)NCBI
RefSeq Acc Id: XM_063284843   ⟹   XP_063140913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,829,901 (-)NCBI
RefSeq Acc Id: XM_063284844   ⟹   XP_063140914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,687,793 - 36,828,681 (-)NCBI
RefSeq Acc Id: XM_063284845   ⟹   XP_063140915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,828,681 (-)NCBI
RefSeq Acc Id: XM_063284846   ⟹   XP_063140916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,687,793 - 36,828,683 (-)NCBI
RefSeq Acc Id: XM_063284847   ⟹   XP_063140917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,687,793 - 36,792,572 (-)NCBI
RefSeq Acc Id: XM_063284848   ⟹   XP_063140918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,828,681 (-)NCBI
RefSeq Acc Id: XM_063284849   ⟹   XP_063140919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,828,325 (-)NCBI
RefSeq Acc Id: XM_063284850   ⟹   XP_063140920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,790,085 (-)NCBI
RefSeq Acc Id: XR_010064757
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,710,534 - 36,828,687 (-)NCBI
RefSeq Acc Id: XR_010064758
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,711,000 - 36,828,687 (-)NCBI
RefSeq Acc Id: XR_010064759
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,710,534 - 36,828,687 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000070180   ⟸   ENSRNOT00000082696
RefSeq Acc Id: XP_038962116   ⟸   XM_039106188
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ALW8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962125   ⟸   XM_039106197
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZUD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962115   ⟸   XM_039106187
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ALW8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962128   ⟸   XM_039106200
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZUD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962129   ⟸   XM_039106201
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZUD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962123   ⟸   XM_039106195
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A905 (UniProtKB/TrEMBL),   A0A8I5ZUD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962126   ⟸   XM_039106198
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZUD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962130   ⟸   XM_039106202
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZUD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000086495   ⟸   ENSRNOT00000114726
RefSeq Acc Id: ENSRNOP00000082025   ⟸   ENSRNOT00000099420
RefSeq Acc Id: ENSRNOP00000094574   ⟸   ENSRNOT00000101955
RefSeq Acc Id: XP_063140913   ⟸   XM_063284843
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063140918   ⟸   XM_063284848
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063140915   ⟸   XM_063284845
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063140919   ⟸   XM_063284849
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063140920   ⟸   XM_063284850
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063140916   ⟸   XM_063284846
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063140914   ⟸   XM_063284844
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063140917   ⟸   XM_063284847
- Peptide Label: isoform X8
Protein Domains
CNH   Rap-GAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JX90-F1-model_v2 AlphaFold A0A0G2JX90 1-1035 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564019 AgrOrtholog
BioCyc Gene G2FUF-50111 BioCyc
Ensembl Genes ENSRNOG00000057044 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082696.2 UniProtKB/TrEMBL
  ENSRNOT00000099420.1 UniProtKB/TrEMBL
  ENSRNOT00000101955.1 UniProtKB/TrEMBL
  ENSRNOT00000114726.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.11210 UniProtKB/TrEMBL
InterPro Citron UniProtKB/TrEMBL
  Rap/Ran-GAP_sf UniProtKB/TrEMBL
  Rap_GAP_dom UniProtKB/TrEMBL
NCBI Gene 499783 ENTREZGENE
PANTHER GTPASE-ACTIVATING RAP/RAN-GAP DOMAIN-LIKE PROTEIN 3 UniProtKB/TrEMBL
  RAP GTPASE-ACTIVATING PROTEIN UniProtKB/TrEMBL
Pfam CNH UniProtKB/TrEMBL
  Rap_GAP UniProtKB/TrEMBL
PhenoGen Garnl3 PhenoGen
PROSITE CNH UniProtKB/TrEMBL
  RAPGAP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000057044 RatGTEx
Superfamily-SCOP SSF111347 UniProtKB/TrEMBL
UniProt A0A0G2JX90_RAT UniProtKB/TrEMBL
  A0A8I5ZUD1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A905 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALW8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-12 Garnl3  GTPase activating Rap/RanGAP domain-like 3  RGD1564019  similar to GTPase activating RANGAP domain-like 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1564019  similar to GTPase activating RANGAP domain-like 3   RGD1564019_predicted  similar to GTPase activating RANGAP domain-like 3 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564019_predicted  similar to GTPase activating RANGAP domain-like 3 (predicted)  LOC499783  similar to GTPase activating RANGAP domain-like 3  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499783  similar to GTPase activating RANGAP domain-like 3      Symbol and Name status set to provisional 70820 PROVISIONAL