Stmnd1 (stathmin domain containing 1)

Gene: Stmnd1 (stathmin domain containing 1) Rattus norvegicus

Analyze

Symbol:

Stmnd1

Name:

stathmin domain containing 1

RGD ID:

1564013

Description:

Orthologous to human STMND1 (stathmin domain containing 1); INTERACTS WITH bisphenol A; gentamycin; paracetamol.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC102554838; LOC498719; RGD1564013; similar to Gene model 1574; stathmin domain-containing protein 1; stathmin domain-containing protein 1-like

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STMND1 (stathmin domain containing 1)	RGD	RGD
Mus musculus (house mouse):	Stmnd1 (stathmin domain containing 1)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Stmnd1 (stathmin domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STMND1 (stathmin domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STMND1 (stathmin domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Stmnd1 (stathmin domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STMND1 (stathmin domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	STMND1 (stathmin domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Stmnd1 (stathmin domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Stmnd1 (stathmin domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	STMND1 (stathmin domain containing 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	stmnd1 (stathmin domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	stmnd1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	18,600,537 - 18,626,807 (-)	NCBI		GRCr8
mRatBN7.2	17	18,393,312 - 18,420,655 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	18,394,346 - 18,437,412 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	17	18,801,170 - 18,829,170 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	18,802,399 - 18,828,929 (-)	NCBI	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	17	18,802,399 - 18,828,929 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	19,146,788 - 19,153,137 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	24,338,611 - 24,365,490 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	18,098,959 - 18,126,088 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

aldehydo-D-glucose (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

carbon nanotube (ISO)

D-glucose (ISO)

dibenz[a,h]anthracene (ISO)

fructose (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glucose (ISO)

ozone (ISO)

paracetamol (EXP)

titanium dioxide (ISO)

tunicamycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

microtubule depolymerization (IEA)

neuron projection development (IEA)

regulation of microtubule polymerization or depolymerization (IEA)

Cellular Component

cytoplasm (IEA)

neuron projection (IEA)

Molecular Function

tubulin binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15632090

Genomics

Comparative Map Data

Stmnd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	18,600,537 - 18,626,807 (-)	NCBI		GRCr8
mRatBN7.2	17	18,393,312 - 18,420,655 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	18,394,346 - 18,437,412 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	17	18,801,170 - 18,829,170 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	18,802,399 - 18,828,929 (-)	NCBI	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	17	18,802,399 - 18,828,929 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	19,146,788 - 19,153,137 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	24,338,611 - 24,365,490 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	18,098,959 - 18,126,088 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

STMND1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	17,102,050 - 17,131,378 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	17,102,050 - 17,131,378 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	17,102,281 - 17,131,609 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	17,236,148 - 17,239,582 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	6	18,340,377 - 18,369,493 (+)	NCBI		Celera
Cytogenetic Map	6	p22.3	NCBI
HuRef	6	17,048,652 - 17,077,766 (+)	NCBI		HuRef
CHM1_1	6	17,105,111 - 17,134,222 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	16,973,679 - 17,003,005 (+)	NCBI		T2T-CHM13v2.0

Stmnd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	46,427,197 - 46,453,591 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	46,427,197 - 46,453,591 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	46,273,721 - 46,300,115 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	46,273,721 - 46,300,115 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	46,369,090 - 46,395,484 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	46,284,693 - 46,311,087 (+)	NCBI		MGSCv36	mm8
Celera	13	47,360,544 - 47,379,614 (+)	NCBI		Celera
Cytogenetic Map	13	A5	NCBI
cM Map	13	23.22	NCBI

Stmnd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955483	8,839,117 - 8,860,560 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955483	8,835,956 - 8,860,916 (-)	NCBI	ChiLan1.0	ChiLan1.0

STMND1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	31,771,652 - 31,801,077 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	27,756,733 - 27,786,163 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	16,960,240 - 16,989,669 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	17,320,860 - 17,350,128 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	17,320,860 - 17,350,126 (+)	Ensembl	panpan1.1		panPan2

STMND1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	16,130,949 - 16,154,363 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	16,130,727 - 16,154,335 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	16,081,020 - 16,104,402 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	16,234,486 - 16,258,055 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	35	16,051,667 - 16,075,011 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	16,104,040 - 16,127,624 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	17,437,971 - 17,461,541 (+)	NCBI		UU_Cfam_GSD_1.0

Stmnd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	8,561,594 - 8,582,919 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936552	3,148,262 - 3,169,145 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936552	3,148,323 - 3,169,145 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STMND1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	13,014,741 - 13,039,651 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	13,013,028 - 13,040,145 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	13,860,215 - 13,887,074 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STMND1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	55,013,798 - 55,042,742 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666044	17,179,298 - 17,208,110 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stmnd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	9,403,759 - 9,426,635 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624756	9,400,334 - 9,426,660 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Stmnd1
333 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9590316	Scort21	Serum corticosterone level QTL 21	4.75	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	1	22871563	Rat
10401807	Kidm52	Kidney mass QTL 52			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	1	31701463	Rat
70184	BpQTLcluster14	Blood pressure QTL cluster 14	3.38		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	1	31990913	Rat
631207	Niddm41	Non-insulin dependent diabetes mellitus QTL 41			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	1	37830672	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	60781592	Rat
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
1641902	Colcr7	Colorectal carcinoma resistance QTL 7	3.35	0.0044	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	17	2115149	21881669	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2115149	34551001	Rat
631499	Stl1	Serum triglyceride level QTL 1	3.6		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	3271398	27389946	Rat
2324619	Coatc4	Coat color QTL 4		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	17	4299130	21293263	Rat
2324619	Coatc4	Coat color QTL 4		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)	17	4299130	21293263	Rat
1354613	Kidm14	Kidney mass QTL 14	6.2		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	17	4299130	35837242	Rat
1354596	Bw32	Body weight QTL 32	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	17	4299130	60781592	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
2293648	Bmd31	Bone mineral density QTL 31	4.5	0.0001	femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	17	4354487	27028127	Rat
2293664	Bmd28	Bone mineral density QTL 28	5.1	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	17	4354487	27028127	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4528038	49528038	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4528038	49528038	Rat
2303561	Bw91	Body weight QTL 91	2		body mass (VT:0001259)	body weight (CMO:0000012)	17	8868462	53868462	Rat
1582199	Insul5	Insulin level QTL 5	3.4	0.0119	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	17	9201365	23653323	Rat
1582208	Kidm32	Kidney mass QTL 32	3.9	0.0018	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	9201365	23653323	Rat
1582224	Epfw4	Epididymal fat weight QTL 4	3.5	0.0058	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	17	9201365	23653323	Rat
1582225	Bw67	Body weight QTL 67	6.2	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
1582226	Bw64	Body weight QTL 64	4.2	0.0017	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
1582241	Bw70	Body weight QTL 70	4.6	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
1582245	Bw73	Body weight QTL 73	4.6	0.0004	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
1582258	Bw76	Body weight QTL 76	4.6	0.0005	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
2300002	Iddm36	Insulin dependent diabetes mellitus QTL 36	1.98		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	9991286	40540197	Rat
1549900	Iddm20	Insulin dependent diabetes mellitus QTL 20	3.7		pancreas integrity trait (VT:0010560)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	17	13986773	21975515	Rat
1331720	Rf43	Renal function QTL 43	2.881		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	17	15330613	23017269	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15330613	55836425	Rat
1354640	Scl32	Serum cholesterol level QTL 32	5.4		blood HDL cholesterol amount (VT:0000184)	blood high density lipoprotein cholesterol level (CMO:0000052)	17	15781592	60781592	Rat
1354659	Scl68	Serum cholesterol level QTL 68	3.9		blood VLDL cholesterol amount (VT:0005144)	blood very low density lipoprotein cholesterol level (CMO:0000648)	17	15781592	60781592	Rat

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_006253772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000051732 ⟹ ENSRNOP00000046185

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	18,394,346 - 18,420,642 (-)	Ensembl
Rnor_6.0 Ensembl	17	18,802,399 - 18,828,929 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000114565 ⟹ ENSRNOP00000087906

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	18,394,346 - 18,437,412 (-)	Ensembl

RefSeq Acc Id:

XM_006253772 ⟹ XP_006253834

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	18,600,537 - 18,626,807 (-)	NCBI
mRatBN7.2	17	18,393,524 - 18,420,655 (-)	NCBI

Sequence:

show sequence

TGGATAGCTTCTCGGATCTTCTAGTTTTCCCTTGCAAAAGTCACATCCTCATCCTTGCTCACTC
AGGTCCCAGGTCTGTGTGTCTGTGACGCCCGTTTATTATGGCAACAGTTTCCAGCAACTTCCCA
GATGCTGAACCTGGAGGTATGGGAGGAGGGAGTGCTGGGCCCTGACCGAGGAACAAGGACTCCA
GGACCAGATAGGAGCTCCCCCGGCACAGCCTAGAGAGGAGGAGCGAGCAATGGGCTGTGGACCT
TCCCAGCAAACAGAGGACCAGAGCCAGAGCCGCATGCCCTCTCCCAGGAAGGGCTGGGAAGAGG
GATCCAAGGCTGATGTCAGAGTAACTTCTTCCAAAGAGAATTACAGTCCCCAAACTGAAGTTGC
ATGGCCCAAGGACACCATAGACAACGCCAAGAGTCTGGACCAACAAGCACAGATGGGAAGTTTG
CCTGGGACTATTCCAGAAAATTCTCCAACTCCTAGTAACACAAACAGGAGAATAAATTCAGACC
CAGTGGCCAATGGATTGACCAACAAACCCCAACTCCTGGAGAGTTGGGAGAGACCAAAGTCATC
AGACATTCTGGAAGAGCTGATTGTCCAAGGAATCATACAGAGCCGGAGCAAAGTATTTAGAAAT
GGAGAGTCATATGACGTCATGGTGGGCACTACAGAGAAGCCACTGAGAAAGCCACCAGCCAGAC
TGAAAAAGCTTAAGGTGAAAAAGGAGGTGAAGGATTTCACAATCCAAGACCTAGAAGAAAAGAT
GCAGGCGGCAGAGGAGCGCCGAAAGACAAAAAAGGAAGAAATAAGAAAAAGGCTACGGAGTGAC
CGGCTTCTGCCTACCGCTAACCCTTCGGATGAAACTGAGCTGGGCAGAGTGGAGGTTCCTTTTA
CAAAAGGCCTTCCAGCTGTGAGTGCCCCTGCTCTGGAGAAGTCCTATACACAGGAAGGAGAGCC
ACTAAAGAGGAAGAAGAGCGAAAGTGATGTGGCCCAGATGAACCGGAACTACTCCTGCACAGGT
TTGGAGCTCGTGGAGTCAGACATGTATTATAACCAAGAGGACAACATATTCTAATACGCCATTT
TAAAAATCATTTCACAAAGTGGTCCATACTTTCCAGTAGGTCTTAGTGTGTCTCACTGTCTTTA
AAAAAAAAATGACTATGTCTCTACTTGTAAAGACTTCTGCCCTGGGTTTAGGGATGGTTCTGTG
AGCATCAGGGGATGGATTTTAGTTGAGTGAATTAAAGGCTGTACTTTTAAAAAAAGGGGGGGGG
GGTTGTTTCAGAATGGCTTCCAGCACTAGAGATCTTAGATTCGGAAGTCCCTGCCAGCTTACCT
GAATTATGTTTGTGCCAAAAGAAATTCTCCCTTTTCGTTTCTGACCTTGGCTATGTGGGATGAG
TCCTTCACCACGAAATGCATAGATGTGTATTCCATGTTGTTTTAATTTTCTGCGTGTTTCTTCT
GTTTTAATTCTCTGCTGTTTGAGAATAAAGAAGTGCCTTGAGGTTGGCTCAATTATCTACATCA
TTTAAGGATTCTGAATCCAGTGGTCAAGGTAATGTCAAGTGGGAGGGGTGGGGATGGCGCCATC
CCTCAGGTGAGCTGCCCTGGCTCACCCTTTCCATGGGAAACAAAGGAAAACAAAGTAACAGAAT
TGTCTACAGTACTACTCATTATTCATGCTGAAGGAGAAAAACTCTGATTAGGGGAAGAGTAGGA
GGAGCTCCAGGGGCTGAAGATCCACCCCATGCTTCTGCTTTTCCCTCAGGCTCTCTGAGCTCAG
GAACCTCCTGCATTCATCTTACTAGAATTATGTCTTGGGTCTCCCCCACCCCTTAATCACCTAC
ATCCAGTCAAGAACCCGATCTTCCAAGTTTACATTCTGAAGATCTGGTCCATCCATTTTTTCAC
ATGTTTCTCCTGGTCCCTACCTTATCCATCACCATCCAACAGTTTTCCCAGCCTCTACACAACC
AAGGTCTGTTTTAAGACCTCTGTTCCGCCATTTCTGGCCCCTACACCTAAACTGTTAAAATAAA
AATACATATTGCCTGTGTCTGTGGCTCGTTTGGATAGTGAAGTCCATTCCTAACTGGAAGATCA
CTGGTTTGCTTCTGCTCTTGGGCTGGCGTTGTAGCCTCGTTTGAAGAGTGCTTGTCTGGTATAC
ACCAATCCAGGATTCCATCCGCAGCATTACACAAACCAGGCATGGTAATACATCCCCATAACTG
AGCATCTGGACAGTGGAAACAAGAGGATCAGAAGTTCACGGTCGACTTCTGCTACATAATAAAT

hide sequence

Protein Sequences


Protein RefSeqs	XP_006253834	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98166	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000046185
	ENSRNOP00000046185.5
	ENSRNOP00000087906.1

RefSeq Acc Id:

ENSRNOP00000046185 ⟸ ENSRNOT00000051732

RefSeq Acc Id:

XP_006253834 ⟸ XM_006253772

- UniProtKB:

A0A8I6A872 (UniProtKB/TrEMBL), D3ZHF4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGCGPSQQTEDQSQSRMPSPRKGWEEGSKADVRVTSSKENYSPQTEVAWPKDTIDNAKSLDQQA
QMGSLPGTIPENSPTPSNTNRRINSDPVANGLTNKPQLLESWERPKSSDILEELIVQGIIQSRS
KVFRNGESYDVMVGTTEKPLRKPPARLKKLKVKKEVKDFTIQDLEEKMQAAEERRKTKKEEIRK
RLRSDRLLPTANPSDETELGRVEVPFTKGLPAVSAPALEKSYTQEGEPLKRKKSESDVAQMNRN
YSCTGLELVESDMYYNQEDNIF

hide sequence

RefSeq Acc Id:

ENSRNOP00000087906 ⟸ ENSRNOT00000114565

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZHF4-F1-model_v2	AlphaFold	D3ZHF4	1-278	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564013	AgrOrtholog
Ensembl Genes	ENSRNOG00000031595	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000051732.6	UniProtKB/TrEMBL
	ENSRNOT00000114565.1	UniProtKB/TrEMBL
InterPro	Stathmin_fam	UniProtKB/TrEMBL
	Stathmin_sf	UniProtKB/TrEMBL
KEGG Report	rno:102554838	UniProtKB/TrEMBL
NCBI Gene	Stmnd1	ENTREZGENE
PANTHER	PTHR10104	UniProtKB/TrEMBL
	STATHMIN DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
PhenoGen	Stmnd1	PhenoGen
PROSITE	STATHMIN_3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000031595	RatGTEx
Superfamily-SCOP	SSF101494	UniProtKB/TrEMBL
UniProt	A0A8I6A872	ENTREZGENE, UniProtKB/TrEMBL
	D3ZHF4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Stmnd1	stathmin domain containing 1	LOC102554838	stathmin domain-containing protein 1-like	Data merged from RGD:7714979	737654	PROVISIONAL
2013-12-18	LOC102554838	stathmin domain-containing protein 1-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2013-01-02	Stmnd1	stathmin domain containing 1	RGD1564013	similar to Gene model 1574	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1564013	similar to Gene model 1574	RGD1564013_predicted	similar to Gene model 1574 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1564013_predicted	similar to Gene model 1574 (predicted)	LOC498719	similar to Gene model 1574	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498719	similar to Gene model 1574			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar