RGD1563680 (similar to CDNA sequence BC052040)

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Keyword

Gene: RGD1563680 (similar to CDNA sequence BC052040) Rattus norvegicus

Symbol:

RGD1563680

Name:

similar to CDNA sequence BC052040

Description:

INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog); hydroquinone O-beta-D-glucopyranoside (ortholog); kojic acid (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

LOC499864; RGD1563680_predicted; similar to CDNA sequence BC052040; similar to CDNA sequence BC052040 (predicted)

Orthologs:

Homo sapiens : C15orf41 (chromosome 15 open reading frame 41) HGNC
Mus musculus : BC052040 (cDNA sequence BC052040) MGI

Latest Assembly:

RGSC Genome Assembly v3.4

Position:

Map	Chr	Position	Strand	Source
Rat Cytogenetic Map	3	q35		NCBI
RGSC Genome Assembly v5.0	3	113,709,670 - 113,914,203	+	NCBI
RGSC Genome Assembly v3.4	3	101,607,751 - 101,811,485	+	NCBI
Rat Celera Assembly	3	101,386,860 - 101,590,147	+	NCBI

Model

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Annotation (Toggle Detail/Summary View)

Gene-Chemical Interaction Annotations

References - curated

Genomics

Comparative Map Data

QTLs in Region (RGSC Genome Assembly v3.4)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358885	Bp251	Blood pressure QTL 251	3.8		Blood pressure	mean arterial	3	10267741	121619110	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		Blood pressure	mean arterial	3	10267741	121619110	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		Liver tumor resistance	nodule number	3	25775548	118863223	Rat
1354604	Bw36	Body weight QTL 36	2.9		Body weight		3	30253942	103304908	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		Hypothalamic-pituitary-adrenal axis	corticosterone post-stress	3	35237920	134686096	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		Kidney mass	right kidney mass	3	39052756	103304908	Rat
2301970	Bw81	Body weight QTL 81	5.19		Body weight		3	39052756	158038027	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		Cardiac mass	left ventricle	3	39052756	158038027	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	.05	Cardiac mass	left ventricle	3	41054012	121619110	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		Mammary tumor susceptibility	estradiol-induced	3	41054012	171063335	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			Gland mass	thymus	3	44551252	149496698	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		Gland mass	pituitary	3	44551542	110215186	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		Gland mass	pituitary	3	44551542	110215186	Rat
631665	Bw8	Body weight QTL 8	5.5		Body weight		3	47722628	119673738	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		Gland mass	thymus	3	47722800	115996144	Rat
1582238	Bw68	Body weight QTL 68	3.2	.0064	Body weight		3	50522618	116023640	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	.0006	Epididymal fat weight		3	50522618	116023640	Rat
1582218	Bw74	Body weight QTL 74	3.9	.0021	Body weight		3	50522618	116023640	Rat
1581568	Rf53	Renal function QTL 53			Renal function	urine protein level	3	53876762	163443738	Rat
1300111	Rf12	Renal function QTL 12	3.78		Renal function	salt-loaded renal blood flow	3	58764506	121619110	Rat
1582210	Bw71	Body weight QTL 71	3.3	.0012	Body weight		3	62558027	116023640	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	.0008	Kidney mass		3	62558027	116023640	Rat
2301414	Kidm37	Kidney mass QTL 37		.001	Kidney mass		3	68816911	121619110	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		.21	Aerobic running capacity	best distance run to exhaustion	3	73863223	118863223	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	.0335	Renal function	urine protein level	3	76620970	148642985	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	.001	Glucose level		3	79283621	114574752	Rat
1582219	Bw63	Body weight QTL 63	3.8	.001	Body weight		3	86696150	116023640	Rat
631649	Bp123	Blood pressure QTL 123	3.2		Blood pressure	salt-loaded systolic	3	89819539	134819539	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		Glucose level	post-pancreatectomy	3	93894678	161985069	Rat
724532	Cm17	Cardiac mass QTL 17	2		Cardiac mass		3	96192217	141192217	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.37		Glucose level	insulin-dependent	3	96506745	149496698	Rat
2312659	Slep7	Serum leptin concentration QTL 7		.001	Hormone level	leptin	3	97523869	170016653	Rat
2312670	Bw94	Body weight QTL 94		.01	Body weight	adiposity index	3	97523869	170016653	Rat
2312673	Scl63	Serum cholesterol level QTL 63		.001	Lipid level	serum cholesterol	3	97523869	170016653	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		Glucose level		3	97524000	163778606	Rat
1354611	Despr2	Despair related QTL 2		.0028	Activity level	immobility level	3	97595472	142595472	Rat
1300161	Rf10	Renal function QTL 10	3.57		Renal function	hypertension related renal vascular resistance	3	101298208	163335184	Rat
1582216	Bw65	Body weight QTL 65	6.3		Body weight		3	101359810	116023640	Rat

Sequence

Nucleotide Sequences

Protein Sequences

Strain Variation

Strain Sequence Variants

ACI/Eur (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

ACI/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN-Lx (ICL)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Imperial College London (Dr Timothy Aitman)
Platform:	SOLID
Secondary Analysis:	BWA, GATK, Samtools
Breeder:	Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information:	MC-A654-5QB00

BN-Lx (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN/NHsdMcwi (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN/SsN (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

Buf/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

COP/Crl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) Univiersity of Wisconsin (Jim Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5
Breeder:	Charles River
Grant Information:	NIH (CA77876)

F344/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

FHH/EurMcwi (MDC)

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Sequenced By:	Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5

LE/Stm (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Dr. Tadao Serikawa, Kyoto Japan.
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

M520/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

MR/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SHR/Olalpcv (ICL)

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Sequenced By:	Imperial College London (Dr Timothy Aitman) University of British Columbia (Dr. Steven Jones)
Platform:	Illumina Hi-seq 2000 and GAII
Secondary Analysis:	BWA, GATK
Breeder:	Institute of Physiology, Academy of Sciences of the Czech Republic, Prague
Grant Information:	LSHG-CT-2005-019015, HEALTH-F4-2010-241504

SHR/Olalpcv (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Imperial College London (Dr Timothy Aitman)
Platform:	Illumina
Secondary Analysis:	GATK
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SHRSP/Gcrc (MDC)

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Sequenced By:	Max Delbruch Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	University of Glasgow, Anna Dominiczak
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Breeder:	Harlan

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Grant Information:	R01 HL089930

SS/JrHsdMcwi (MDC)

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Sequenced By:	Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

WKY/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

WN/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

Additional Information

External Database Links

Nomenclature History

More on RGD1563680
	Entrez Gene
	Ensembl Gene
	Genome Browser
	NCBI Map Viewer
	Vista
	Vista + UCSC

RGD Object Information
RGD ID:	1563680
Created:	2006-02-09
Species:	Rattus norvegicus
Last Modified:	2013-04-16
Status:	ACTIVE