Mageb11l1 (MAGE family member B11 like 1) - Rat Genome Database

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Gene: Mageb11l1 (MAGE family member B11 like 1) Rattus norvegicus
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Symbol: Mageb11l1 (Ensembl: RGD1563590)
Name: MAGE family member B11 like 1 (Ensembl:similar to melanoma antigen 2)
RGD ID: 1563590
Description: INVOLVED IN negative regulation of transcription by RNA polymerase II (inferred); FOUND IN nucleus (inferred); INTERACTS WITH lidocaine
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC302435; melanoma-associated antigen B5-like; RGD1563590; similar to melanoma antigen 2
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X60,595,065 - 60,596,227 (-)NCBIGRCr8
mRatBN7.2X56,619,858 - 56,621,033 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX56,619,985 - 56,621,013 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X60,989,512 - 60,996,329 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX60,989,602 - 60,990,540 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X61,572,388 - 61,573,416 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X79,183,464 - 79,184,492 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX57,108,302 - 57,111,914 (-)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
lidocaine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References

Genomics

Variants

.
Variants in Mageb11l1
8 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:79
Count of miRNA genes:71
Interacting mature miRNAs:73
Transcripts:ENSRNOT00000045816
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

nervous system reproductive system
High
Medium
Low 7
Below cutoff 1 15

Sequence


RefSeq Acc Id: ENSRNOT00000045816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX56,619,985 - 56,621,013 (-)Ensembl
Rnor_6.0 EnsemblX60,989,602 - 60,990,540 (-)Ensembl
RefSeq Acc Id: XM_006257014   ⟹   XP_006257076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X60,595,065 - 60,596,227 (-)NCBI
mRatBN7.2X56,619,858 - 56,621,033 (-)NCBI
Rnor_6.0X60,989,512 - 60,996,329 (-)NCBI
Rnor_5.0X61,572,388 - 61,573,416 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_006257076 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000097626
  ENSRNOP00000097626.1
RefSeq Acc Id: XP_006257076   ⟸   XM_006257014
- UniProtKB: A0A8I6GM54 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
MAGE

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2289 BioCyc
Ensembl Genes ENSRNOG00000038231 Ensembl
  ENSRNOG00000071183 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045816.5 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1200 UniProtKB/TrEMBL
  1.10.10.1210 UniProtKB/TrEMBL
InterPro MAGE UniProtKB/TrEMBL
  MAGE_N UniProtKB/TrEMBL
  MAGE_WH1 UniProtKB/TrEMBL
  MAGE_WH2 UniProtKB/TrEMBL
  MHD_dom UniProtKB/TrEMBL
NCBI Gene 302435 ENTREZGENE
PANTHER PTHR11736 UniProtKB/TrEMBL
  PTHR11736:SF35 UniProtKB/TrEMBL
Pfam MAGE UniProtKB/TrEMBL
PhenoGen Mageb11l1 PhenoGen
PROSITE MAGE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000038231 RatGTEx
  ENSRNOG00000071183 RatGTEx
SMART MAGE UniProtKB/TrEMBL
  MAGE_N UniProtKB/TrEMBL
UniProt A0A8I6GM54 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Mageb11l1  MAGE family member B11 like 1  RGD1563590  similar to melanoma antigen 2  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1563590  similar to melanoma antigen 2   RGD1563590_predicted  similar to melanoma antigen 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563590_predicted  similar to melanoma antigen 2 (predicted)  LOC302435  similar to melanoma antigen 2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC302435  similar to melanoma antigen 2      Symbol and Name status set to provisional 70820 PROVISIONAL