Tlr7 (toll-like receptor 7) - Rat Genome Database

Name: Tlr7
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Tlr7 (toll-like receptor 7) Rattus norvegicus

Analyze

Symbol:

Tlr7

Name:

toll-like receptor 7

RGD ID:

1563357

Description:

Predicted to enable RNA binding activity and pattern recognition receptor activity. Predicted to be involved in several processes, including pattern recognition receptor signaling pathway; positive regulation of macromolecule biosynthetic process; and response to virus. Predicted to act upstream of or within positive regulation of macrophage cytokine production and regulation of protein phosphorylation. Predicted to be located in cytoplasmic vesicle; endoplasmic reticulum; and lysosome. Predicted to be part of receptor complex. Predicted to be active in plasma membrane. Biomarker of perinatal necrotizing enterocolitis. Human ortholog(s) of this gene implicated in COVID-19 and X-Linked immunodeficiency 74. Orthologous to human TLR7 (toll like receptor 7); PARTICIPATES IN Toll-like receptor signaling pathway; influenza A pathway; measles pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC317468; RGD1563357; similar to toll-like receptor 7

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TLR7 (toll like receptor 7)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tlr7 (toll-like receptor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tlr7 (toll like receptor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TLR7 (toll like receptor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TLR7 (toll like receptor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tlr7 (toll like receptor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TLR7 (toll like receptor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TLR7 (toll like receptor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tlr7 (toll like receptor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MTRES1 (mitochondrial transcription rescue factor 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TLR7 (toll like receptor 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tlr7 (toll-like receptor 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lron-15	Alliance	DIOPT (Hieranoid\|InParanoid)
Drosophila melanogaster (fruit fly):	CG4168	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid)
Xenopus tropicalis (tropical clawed frog):	tlr7	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	30,644,324 - 30,670,796 (+)	NCBI		GRCr8
mRatBN7.2	X	27,027,380 - 27,054,309 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	27,027,425 - 27,054,754 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	28,100,702 - 28,126,815 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	31,502,172 - 31,528,275 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	27,715,343 - 27,741,455 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	28,486,836 - 28,513,004 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	28,486,869 - 28,512,957 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	28,882,968 - 28,908,584 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	47,330,737 - 47,356,841 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	27,439,445 - 27,465,491 (+)	NCBI		Celera
Cytogenetic Map	X	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

allergic contact dermatitis (ISO)

anogenital venereal wart (ISO)

autistic disorder (ISO)

COVID-19 (ISO)

Escherichia Coli Meningitis (ISO)

genetic disease (ISO)

hepatitis C (ISO)

hepatocellular carcinoma (ISO)

Joubert syndrome 1 (ISO)

lupus nephritis (ISO)

membranoproliferative glomerulonephritis (ISO)

Nasal Polyps (ISO)

Neurodevelopmental Disorders (ISO)

Orthomyxoviridae Infections (ISO)

perinatal necrotizing enterocolitis (IEP)

respiratory syncytial virus infectious disease (ISO)

systemic lupus erythematosus (ISO,ISS)

Systemic Lupus Erythematosus 17 (ISO)

X-Linked immunodeficiency 74 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

astemizole (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chloroquine (ISO)

chlorpyrifos (ISO)

choline (ISO)

dextran sulfate (ISO)

disodium selenite (ISO)

doxorubicin (EXP)

endosulfan (ISO)

folic acid (ISO)

Heliotrine (EXP)

hydroxychloroquine (ISO)

imiquimod (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

mangiferin (ISO)

metformin (ISO)

methamphetamine (ISO)

mifepristone (ISO)

nickel atom (ISO)

nitrates (EXP)

oxaliplatin (EXP)

ozone (ISO)

paclitaxel (ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

poly(I:C) (ISO)

progesterone (ISO)

protein kinase inhibitor (ISO)

quercetin (ISO)

resiquimod (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

Senkirkine (EXP)

sodium arsenite (ISO)

Soman (EXP)

succimer (ISO)

testosterone (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

canonical NF-kappaB signal transduction (IBA,ISO)

cellular response to mechanical stimulus (ISO)

cellular response to virus (ISO)

defense response to virus (IBA,ISO)

inflammatory response (IEA)

innate immune response (ISO)

JNK cascade (ISO)

MAPK cascade (ISO)

positive regulation of canonical NF-kappaB signal transduction (ISO)

positive regulation of chemokine production (ISO)

positive regulation of interferon-alpha production (ISO)

positive regulation of interferon-beta production (ISO)

positive regulation of interleukin-6 production (IBA,ISO)

positive regulation of interleukin-8 production (ISO)

positive regulation of macrophage cytokine production (ISO)

positive regulation of non-canonical NF-kappaB signal transduction (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

positive regulation of type II interferon production (ISO)

regulation of protein phosphorylation (ISO)

response to cGMP (ISO)

toll-like receptor 7 signaling pathway (IBA,ISO)

toll-like receptor signaling pathway (IBA)

Cellular Component

cytoplasm (ISO)

early phagosome (ISO)

endoplasmic reticulum (ISO)

endoplasmic reticulum membrane (IEA)

endosome (ISO)

lysosome (ISO)

plasma membrane (IBA,ISO)

receptor complex (ISO)

Molecular Function

double-stranded RNA binding (ISO)

pattern recognition receptor activity (IBA)

protein binding (ISO)

single-stranded RNA binding (ISO)

siRNA binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

influenza A pathway (IEA)

measles pathway (IEA)

Toll-like receptor signaling pathway (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	TLR4 links podocytes with the innate immune system to mediate glomerular injury.	Banas MC, etal., J Am Soc Nephrol. 2008 Apr;19(4):704-13. doi: 10.1681/ASN.2007040395. Epub 2008 Feb 6.
2.	Differential regulation of Toll-like receptor mRNAs in experimental murine central nervous system infections.	Bottcher T, etal., Neurosci Lett. 2003 Jun 19;344(1):17-20.
3.	Association of Toll-like receptor 7 variants with life-threatening COVID-19 disease in males: findings from a nested case-control study.	Fallerini C, etal., Elife. 2021 Mar 2;10. pii: 67569. doi: 10.7554/eLife.67569.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Combinations of TLR and NOD2 ligands stimulate rat microglial P2X4R expression.	Guo LH, etal., Biochem Biophys Res Commun. 2006 Oct 27;349(3):1156-62. Epub 2006 Sep 1.
6.	Pathogen recognition by the innate immune system.	Kumar H, etal., Int Rev Immunol. 2011 Feb;30(1):16-34.
7.	Changes in intestinal Toll-like receptors and cytokines precede histological injury in a rat model of necrotizing enterocolitis.	Liu Y, etal., Am J Physiol Gastrointest Liver Physiol. 2009 Sep;297(3):G442-50. Epub 2009 Jul 16.
8.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
9.	GOA pipeline	RGD automated data pipeline
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Critical role of TLR7 in the acceleration of systemic lupus erythematosus in TLR9-deficient mice.	Santiago-Raber ML, etal., J Autoimmun. 2010 Jun;34(4):339-48. doi: 10.1016/j.jaut.2009.11.001. Epub 2009 Nov 26.
12.	Gene expression of nucleic acid-sensing pattern recognition receptors in children hospitalized for respiratory syncytial virus-associated acute bronchiolitis.	Scagnolari C, etal., Clin Vaccine Immunol. 2009 Jun;16(6):816-23. Epub 2009 Apr 22.
13.	Mechanistic investigation of immunosuppression in patients with condyloma acuminata.	Shi YJ, etal., Mol Med Rep. 2013 Aug;8(2):480-6. doi: 10.3892/mmr.2013.1511. Epub 2013 Jun 6.
14.	Differential expression of Toll-like receptor pathway genes in chronic rhinosinusitis with or without nasal polyps.	Zhang Q, etal., Acta Otolaryngol. 2013 Feb;133(2):165-73. doi: 10.3109/00016489.2012.717713. Epub 2012 Nov 19.

Additional References at PubMed

PMID:14976261	PMID:14976262	PMID:15723075	PMID:16111635	PMID:16188996	PMID:16286015	PMID:18261938	PMID:18305481	PMID:19593445	PMID:19740627	PMID:21364926	PMID:21753151
PMID:22765640	PMID:23382219	PMID:24091496	PMID:24740015	PMID:25384124	PMID:26363072	PMID:26434622	PMID:28665028	PMID:31647818	PMID:32682816	PMID:36674770	PMID:37596656

Genomics

Comparative Map Data

Tlr7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	30,644,324 - 30,670,796 (+)	NCBI		GRCr8
mRatBN7.2	X	27,027,380 - 27,054,309 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	27,027,425 - 27,054,754 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	28,100,702 - 28,126,815 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	31,502,172 - 31,528,275 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	27,715,343 - 27,741,455 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	28,486,836 - 28,513,004 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	28,486,869 - 28,512,957 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	28,882,968 - 28,908,584 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	47,330,737 - 47,356,841 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	27,439,445 - 27,465,491 (+)	NCBI		Celera
Cytogenetic Map	X	q13	NCBI

TLR7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	12,867,072 - 12,890,361 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	12,867,072 - 12,890,361 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	12,885,191 - 12,908,480 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	12,795,123 - 12,818,401 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	12,644,862 - 12,666,567	NCBI
Celera	X	16,999,208 - 17,022,486 (+)	NCBI		Celera
Cytogenetic Map	X	p22.2	NCBI
HuRef	X	10,651,692 - 10,675,129 (+)	NCBI		HuRef
CHM1_1	X	12,915,641 - 12,938,921 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	12,448,550 - 12,471,838 (+)	NCBI		T2T-CHM13v2.0

Tlr7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	166,086,376 - 166,113,570 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	166,087,925 - 166,113,554 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	167,303,380 - 167,330,574 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	167,304,929 - 167,330,558 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	163,742,863 - 163,768,460 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	162,649,036 - 162,674,633 (-)	NCBI		MGSCv36	mm8
Celera	X	150,452,330 - 150,504,044 (-)	NCBI		Celera
Cytogenetic Map	X	F5	NCBI
cM Map	X	78.31	NCBI

Tlr7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955544	424,850 - 443,564 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955544	424,897 - 443,562 (-)	NCBI	ChiLan1.0	ChiLan1.0

TLR7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	14,651,418 - 14,674,103 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	14,655,084 - 14,677,769 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	5,479,247 - 5,504,810 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	12,768,698 - 12,790,517 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	12,767,981 - 12,790,517 (+)	Ensembl	panpan1.1		panPan2

TLR7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	9,331,243 - 9,360,461 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	9,314,815 - 9,359,603 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	9,290,888 - 9,316,297 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	9,283,446 - 9,312,699 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	9,285,506 - 9,311,834 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	9,270,957 - 9,296,384 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	9,310,224 - 9,335,853 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	9,302,542 - 9,328,038 (+)	NCBI		UU_Cfam_GSD_1.0

Tlr7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	2,593,498 - 2,611,939 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	2,607,508 - 2,610,675 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	2,593,544 - 2,610,972 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TLR7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	X	9,573,178 - 9,576,987 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	10,472,850 - 10,476,659 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TLR7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	11,348,520 - 11,372,132 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666056	13,140,418 - 13,165,724 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tlr7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624882	1,375,216 - 1,379,705 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tlr7
127 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	71
Count of miRNA genes:	60
Interacting mature miRNAs:	63
Transcripts:	ENSRNOT00000005620
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1	43491017	Rat
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	1448129	31706553	Rat
1298071	Edpm12	Estrogen-dependent pituitary mass QTL 12	3.2		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	X	2927898	47927898	Rat
10755455	Coatc13	Coat color QTL 13		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	4406000	49406000	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	4494549	49494549	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
71116	Niddm16	Non-insulin dependent diabetes mellitus QTL 16	7.81		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	15297802	60297802	Rat
1598873	Memor2	Memory QTL 2	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	X	20990947	41052531	Rat
2290375	Gluco34	Glucose level QTL 34	2.75		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	20990947	41203591	Rat

Markers in Region

RH135007

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	27,053,516 - 27,053,729 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	28,512,137 - 28,512,349	NCBI	Rnor6.0
Rnor_5.0	X	28,908,249 - 28,908,461	UniSTS	Rnor5.0
RGSC_v3.4	X	47,356,777 - 47,356,989	UniSTS	RGSC3.4
Celera	X	27,465,427 - 27,465,639	UniSTS
RH 3.4 Map	X	345.5	UniSTS
Cytogenetic Map	X	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			4		15						2	2
Low	3	31	43	31	4	31	8	8	66	35	31	9	8
Below cutoff		8	10	10		10		3	8		6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001097582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602081	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF032637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MT730468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000005620 ⟹ ENSRNOP00000005620

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	27,027,435 - 27,054,754 (+)	Ensembl
Rnor_6.0 Ensembl	X	28,486,869 - 28,512,957 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104011 ⟹ ENSRNOP00000089883

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	27,027,425 - 27,054,754 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000118923 ⟹ ENSRNOP00000094649

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	27,027,425 - 27,053,850 (+)	Ensembl

RefSeq Acc Id:

NM_001097582 ⟹ NP_001091051

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	30,644,426 - 30,670,525 (+)	NCBI
mRatBN7.2	X	27,027,483 - 27,053,581 (+)	NCBI
Rnor_6.0	X	28,486,929 - 28,512,201 (+)	NCBI
Rnor_5.0	X	28,882,968 - 28,908,584 (+)	NCBI
RGSC_v3.4	X	47,330,737 - 47,356,841 (+)	RGD
Celera	X	27,439,445 - 27,465,491 (+)	RGD

Sequence:

show sequence

CCTTCTCTCTGTTTCAGAGGACTCCACATAGAGAATTACTCCGTGCCTTCAAGAAAGATGCCAT
TGGATCCCTTCTCCGTCTGATCCTGGTCTATCTCAAGCTCTGTTCTCCTCCACCAAACTTCTTG
ATTCCAGTTTGAAAAGAAAACTGAAAATGGTATTTCCAATGTGGACATTGAAGAGACAAAGTTT
TATCTTTTTAAATATGATCTTAGTTTCTAGAGTCCTTGGGTTTCGATGGTATCCTAAAACTCTA
CCTTGTGATGTCTCTCTCGATAGCACAAACACCCATGTGATTGTGGATTGCACAGACAAGCATT
TGACAGAAATACCTGAGGGTATTCCCACTAATACCACCAACCTTACCCTTACCATCAACCACAT
ACCAAGCATCTCTCCAGACTCCTTCCATAGGCTGAAGCATCTGGAGGAGCTTGATTTAAGATGC
AACTGTGTACCTATTCTACTGGGGTCCAAAGCCAATGTGTGCACCAAGAGGCTACAGATTAGAC
CTGGAAGCTTTAGTGGACTCTCTGACTTAAAATCCCTTTACCTGGATGGAAATCAACTTCTAGA
GATACCACAGGATCTTCCATCAAGCTTACAGCTTCTGAGCCTTGAGGCTAACAATATCTTCTCC
ATCACAAAGGAGAATCTATCAGAACTAGTCAACATTGAATCACTCTACCTGGGCCAAAACTGTT
ATTATCGAAATCCTTGCAATGTTTCCTATTCTATTGAAAAAGATGCTTTCCTAGTTATGAAAAA
TTTAAAGGTTCTCTCACTAAAAGATAACAATGTCACAGCTGTCCCCACCATTTTGCCACCTAAT
TTGCTAGAACTCTATCTTTATAACAACATCATTAAGAGAATCCAAGAACATGATTTTAATAAGC
TCAGCCAGTTGCAAGTTCTTGACCTAAGTGGAAACTGCCCTCGATGTTATAATGTCCCATATCC
ATGTACACCATGTGAAAATAATTCTCCCTTACAGATCCATGACAATGCTTTTGATTCATTAACA
GAATTAAAAGTTTTACGTCTACACAGTAACTCTCTTCAGCATGTGCCTGCAGAATGGTTTAAAA
ACATGAGCAACCTCCAGGAACTAGACCTCTCCCAAAACTACTTAGCCAGAGAAATTGAAGAAGC
CAAATTTTTGAATTCTCTCCCCAACCTTGTCCAGTTGGATCTGTCTTTCAATTATGAGCTGCAG
GTCTACCATGCATCTATTACTTTACCACACTCACTCTCTTCATTGACAAAGTTGAAAAATCTGT
ATATCAAGGGATATGTCTTTAAAGAGCTGAAAGACTCCAGCCTTTCTGTATTGCACAACCTTTC
CAATCTAGAAGTTCTTGACCTTGGCACTAACTTCATAAAAATTGCTGACCTCAACATATTCCAA
CAGTTTGAAAACCTCAAATTCATAGACCTTTCAGTGAATAAGATATCCCCCTCAGAAGAGTCAA
GAGAAGTTGGTTTATGTCCTAATGCCCAAACTTCTGTAGACTGGCACGGACCCCAGGTCCTTGA
GGCCTTACACTATTTCCGATATGATGAATATGCACGGAGCTGCAGGTTCAAAAACAAAGAGCCG
CCTACTTTTTTGCCTTTGAATGCAGACTGCCACACATATGGGAAGACCTTAGACCTAAGTAGAA
ATAACATATTTTTTATTAAACCCTCTGATTTTAAGCATCTTTCATTCCTGAAATGCCTCAATTT
GTCAGGAAACGCCATTGGCCAAACTCTTAATGGCAGTGAACTCCAGCCCTTGAGAGAGCTGCGG
TACTTAGACTTCTCCAACAACCGGCTTGATTTACTCTACTCAACAGCCTTTGAAGAGCTCCAGA
ATCTGGAAATTCTGGATCTAAGTAGTAACAGCCACTATTTTCAAGCAGAAGGAATTACTCACAT
GCTAAACTTTACCAAGAAATTACGGCATCTAGAGAAACTCATGATGAATGACAATGACATCTCT
ACTTCAGCCAGCAGGACCATGGAAAGTGAATCTCTTCGTGTTCTGGAATTCAGAGGCAACCATT
TAGATGTTCTATGGAGAGATGGTGATAACAGATACTTGGACTTCTTCAAGAATCTGCTCAACTT
AGAGGAATTAGATATCTCCAGAAATTCCCTGAATTCCGTGCCTCCTGGAGTTTTTGAGGGTATG
CCACCGAATCTAACGACTCTCTCCTTAGCCAAAAATGGACTCAGATCTTTCTCTTGGGGTAGAC
TTCAGTTACTAAAGCATTTGAAAAATTTGGACCTCAGCCACAACCAGCTGACAACTGTCCCTGC
GAGATTGGCCAACTGTTCCAAAAGTCTCACAAAACTGATTCTTAATCATAATCAAATCAGGCAG
TTGACAAAATATTTTCTAGAAGATGCTTTGCAATTGCGCTATCTAGACATCAGTTCAAATAAGA
TCCAGGTCATTCAGAAGACTAGCTTCCCAGAAAACGTCCTCAACAATCTGAACATGTTGCTTTT
ACATCACAATCGCTTTCTTTGCAACTGTGATGCTGTGTGGTTTGTCTGGTGGGTTAATCATACA
GATGTTACTATTCCATACCTGGCCACTGATGTGACTTGTGCAGGTCCAGGCGCACACAAAGGTC
AAAGTGTCATATCTCTGGATCTATATACATGTGAATTAGATCTCACAAACCTGATTCTGTTCTC
AGTTTCCATATCATCAGTCCTCTTTCTTATGATAGTTATGACAACAAGTCACCTCTTTTTCTGG
GATATGTGGTACATTTATTATTTCTGGAAAGCCAAGATAAAGGGTTATCAACATCTGCAATCAA
TGGAGTCTTGTTATGATGCTTTTATTGTGTATGACACTAAAAACTCAGCTGTGACAGAATGGGT
TTTGCAGGAGCTGGTGGTTAAATTGGAAGACCCAAGAGAAAAACACTTTAATTTGTGTCTAGAA
GAAAGAGACTGGCTACCAGGGCAGCCAGTTCTAGAAAACCTTTCCCAGAGCATACAGCTCAGCA
GAAAGACAGTGTTTGTGATGACACAGAAATATGCGAAGACTGAGAGTTTTAAGATGGCGTTTTA
TTTGTCCCATCAGAGGCTTATGGATGAAAAGGTGGATGTGATTATCTTGATATTCTTGGAAAAG
CCTCTTCAGAAGTCTAAGTTTCTTCAGCTCCGGAAGAGGCTCTGCAGCAGTTCTGTCCTTGAGT
GGCCTACAAATCCACAAGCTCACCCATATTTCTGGCAGTGCCTGAAAAATGCCCTGACTACAGA
CAATCATGTGGCTTATAGTCAAATGTTCAAGGAAACAGTCTAGCTCTCTGAAGAATGTCACCAC
CTAGGACATGCCTGGGTATCTGATTTTTTTCATAAAGGTTTCCATAAATGAAGGTCGGATTTTT
CCTAACAGCTGCCATAGCTCAGATTAGTGGGAAACCATCAATATATGGCAAAGAAATTAGGAAG
GGGAGACTGA

hide sequence

RefSeq Acc Id:

XM_017602079 ⟹ XP_017457568

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	30,644,324 - 30,670,796 (+)	NCBI
mRatBN7.2	X	27,027,380 - 27,054,309 (+)	NCBI
Rnor_6.0	X	28,486,836 - 28,513,004 (+)	NCBI

Sequence:

show sequence

TCCTGCCCTCCTCCTGCTACTCAGCCTCAATTTCAAATTTGGAAACCCCAAGGCATGCAGCTCA
AAGGCTCTGCAAGTCTGGGTTTTCTGTTGCCTTCTCTCTGTTTCAGAGGACTCCACATAGAGAA
TTACTCCGTGCCTTCAAGAAAGATGCCATTGGATCCCTTCTCCGTCTGATCCTGGTCTATCTCA
AGCTCTGTTCTCCTCCACCAAACTTCTTGATTCCAGTTTGAAAAGAAAACTGAAAATGCACTCT
ATGCAACAACTAATATGCAATGCTGCTTCTGCATATTAAAAACTGTTTGGGGCAGCAAGGGAGA
TGGCTCAGTTGGGTATTTCCAATGTGGACATTGAAGAGACAAAGTTTTATCTTTTTAAATATGA
TCTTAGTTTCTAGAGTCCTTGGGTTTCGATGGTATCCTAAAACTCTACCTTGTGATGTCTCTCT
CGATAGCACAAACACCCATGTGATTGTGGATTGCACAGACAAGCATTTGACAGAAATACCTGAG
GGTATTCCCACTAATACCACCAACCTTACCCTTACCATCAACCACATACCAAGCATCTCTCCAG
ACTCCTTCCATAGGCTGAAGCATCTGGAGGAGCTTGATTTAAGATGCAACTGTGTACCTATTCT
ACTGGGGTCCAAAGCCAATGTGTGCACCAAGAGGCTACAGATTAGACCTGGAAGCTTTAGTGGA
CTCTCTGACTTAAAATCCCTTTACCTGGATGGAAATCAACTTCTAGAGATACCACAGGATCTTC
CATCAAGCTTACAGCTTCTGAGCCTTGAGGCTAACAATATCTTCTCCATCACAAAGGAGAATCT
ATCAGAACTAGTCAACATTGAATCACTCTACCTGGGCCAAAACTGTTATTATCGAAATCCTTGC
AATGTTTCCTATTCTATTGAAAAAGATGCTTTCCTAGTTATGAAAAATTTAAAGGTTCTCTCAC
TAAAAGATAACAATGTCACAGCTGTCCCCACCATTTTGCCACCTAATTTGCTAGAACTCTATCT
TTATAACAACATCATTAAGAGAATCCAAGAACATGATTTTAATAAGCTCAGCCAGTTGCAAGTT
CTTGACCTAAGTGGAAACTGCCCTCGATGTTATAATGTCCCATATCCATGTACACCATGTGAAA
ATAATTCTCCCTTACAGATCCATGACAATGCTTTTGATTCATTAACAGAATTAAAAGTTTTACG
TCTACACAGTAACTCTCTTCAGCATGTGCCTGCAGAATGGTTTAAAAACATGAGCAACCTCCAG
GAACTAGACCTCTCCCAAAACTACTTAGCCAGAGAAATTGAAGAAGCCAAATTTTTGAATTCTC
TCCCCAACCTTGTCCAGTTGGATCTGTCTTTCAATTATGAGCTGCAGGTCTACCATGCATCTAT
TACTTTACCACACTCACTCTCTTCATTGACAAAGTTGAAAAATCTGTATATCAAGGGATATGTC
TTTAAAGAGCTGAAAGACTCCAGCCTTTCTGTATTGCACAACCTTTCCAATCTAGAAGTTCTTG
ACCTTGGCACTAACTTCATAAAAATTGCTGACCTCAACATATTCCAACAGTTTGAAAACCTCAA
ATTCATAGACCTTTCAGTGAATAAGATATCCCCCTCAGAAGAGTCAAGAGAAGTTGGTTTATGT
CCTAATGCCCAAACTTCTGTAGACTGGCACGGACCCCAGGTCCTTGAGGCCTTACACTATTTCC
GATATGATGAATATGCACGGAGCTGCAGGTTCAAAAACAAAGAGCCGCCTACTTTTTTGCCTTT
GAATGCAGACTGCCACACATATGGGAAGACCTTAGACCTAAGTAGAAATAACATATTTTTTATT
AAACCCTCTGATTTTAAGCATCTTTCATTCCTGAAATGCCTCAATTTGTCAGGAAACGCCATTG
GCCAAACTCTTAATGGCAGTGAACTCCAGCCCTTGAGAGAGCTGCGGTACTTAGACTTCTCCAA
CAACCGGCTTGATTTACTCTACTCAACAGCCTTTGAAGAGCTCCAGAATCTGGAAATTCTGGAT
CTAAGTAGTAACAGCCACTATTTTCAAGCAGAAGGAATTACTCACATGCTAAACTTTACCAAGA
AATTACGGCATCTAGAGAAACTCATGATGAATGACAATGACATCTCTACTTCAGCCAGCAGGAC
CATGGAAAGTGAATCTCTTCGTGTTCTGGAATTCAGAGGCAACCATTTAGATGTTCTATGGAGA
GATGGTGATAACAGATACTTGGACTTCTTCAAGAATCTGCTCAACTTAGAGGAATTAGATATCT
CCAGAAATTCCCTGAATTCCGTGCCTCCTGGAGTTTTTGAGGGTATGCCACCGAATCTAACGAC
TCTCTCCTTAGCCAAAAATGGACTCAGATCTTTCTCTTGGGGTAGACTTCAGTTACTAAAGCAT
TTGAAAAATTTGGACCTCAGCCACAACCAGCTGACAACTGTCCCTGCGAGATTGGCCAACTGTT
CCAAAAGTCTCACAAAACTGATTCTTAATCATAATCAAATCAGGCAGTTGACAAAATATTTTCT
AGAAGATGCTTTGCAATTGCGCTATCTAGACATCAGTTCAAATAAGATCCAGGTCATTCAGAAG
ACTAGCTTCCCAGAAAACGTCCTCAACAATCTGAACATGTTGCTTTTACATCACAATCGCTTTC
TTTGCAACTGTGATGCTGTGTGGTTTGTCTGGTGGGTTAATCATACAGATGTTACTATTCCATA
CCTGGCCACTGATGTGACTTGTGCAGGTCCAGGCGCACACAAAGGTCAAAGTGTCATATCTCTG
GATCTATATACATGTGAATTAGATCTCACAAACCTGATTCTGTTCTCAGTTTCCATATCATCAG
TCCTCTTTCTTATGATAGTTATGACAACAAGTCACCTCTTTTTCTGGGATATGTGGTACATTTA
TTATTTCTGGAAAGCCAAGATAAAGGGTTATCAACATCTGCAATCAATGGAGTCTTGTTATGAT
GCTTTTATTGTGTATGACACTAAAAACTCAGCTGTGACAGAATGGGTTTTGCAGGAGCTGGTGG
TTAAATTGGAAGACCCAAGAGAAAAACACTTTAATTTGTGTCTAGAAGAAAGAGACTGGCTACC
AGGGCAGCCAGTTCTAGAAAACCTTTCCCAGAGCATACAGCTCAGCAGAAAGACAGTGTTTGTG
ATGACACAGAAATATGCGAAGACTGAGAGTTTTAAGATGGCGTTTTATTTGTCCCATCAGAGGC
TTATGGATGAAAAGGTGGATGTGATTATCTTGATATTCTTGGAAAAGCCTCTTCAGAAGTCTAA
GTTTCTTCAGCTCCGGAAGAGGCTCTGCAGCAGTTCTGTCCTTGAGTGGCCTACAAATCCACAA
GCTCACCCATATTTCTGGCAGTGCCTGAAAAATGCCCTGACTACAGACAATCATGTGGCTTATA
GTCAAATGTTCAAGGAAACAGTCTAGCTCTCTGAAGAATGTCACCACCTAGGACATGCCTGGGT
ATCTGATTTTTTTCATAAAGGTTTCCATAAATGAAGGTCGGATTTTTCCTAACAGCTGCCATAG
CTCAGATTAGTGGGAAACCATCAATATATGGCAAAGAAATTAGGAAGGGGAGACTGATAGACGA
TAACTTCTTTCTTCTTTCTGCATGCTGCCACGCACATTTAAATATCTCCCCCAGCTCAACTATG
AAATGCTGTATGAAGAGGGGTGCCTAGGAGGAAACACAGACTTTCATTTATCTGCATGCAATTG
AGAAGAGGCACACATCTACCCTTAAGAAGTACTAGTATTTTCAGTATTAGGTTAAAAATTATGC
AAGTTCTATCCCTGTGATACTGAACTGTATCAGAGTTCAATGAAATAAAAGCCCGGAGAACTTC
TCGGCAAATTGTGTCACTATCATGTAGTATTCACTACACTAGAAAAGCAGTTACAGTTGCTGTA
CTGTTAGTAGCTGCTTCAGTGCCTCTTACTCATTTTCTTGGGGTACATTGATGGGTTCTCTGTG
GAAAAAGGGAAACTTATTTTGTCATCCATGGACATGATCAACTTATAAGTGGAGAAAATGAAAA
TATTATTCCCACAAGCCAAGTATGTTCTTTGCATTTGATGATGATTCATCTGCTGAAATATTCT
ATGTGCATAACCAGAATACTGTTTCCAAAGTAAAATGATCTTTAAAATAACTTCATTAATTGAT
ATTAGTTTGTGAACTTGTGCCAATATTTTTAGGCATCTGTAACTGTAATGCCCCAATATTAGGT
GGTACTCATAGTAAGCCCAAAAGGAGGTGGAAATGTATTCAGTGATATTGGGGATAAGAAAATA
AATGGATGACAATTGCATATGTTTATTTCAGTTCTGAAAAAAGGGGGAAAGACAAGGAGCTTAA
GAGAGCATAACATTGAGAAATTATTGGA

hide sequence

RefSeq Acc Id:

XM_017602080 ⟹ XP_017457569

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	30,644,363 - 30,670,796 (+)	NCBI
mRatBN7.2	X	27,027,420 - 27,054,309 (+)	NCBI
Rnor_6.0	X	28,486,836 - 28,513,004 (+)	NCBI

Sequence:

show sequence

TCCTGCCCTCCTCCTGCTACTCAGCCTCAATTTCAAATTTGGAAACCCCAAGGCATGCAGCTCA
AAGGCTCTGCAAGTCTGGGTTTTCTGTTGCCTTCTCTCTGTTTCAGAGGACTCCACATAGAGAA
TTACTCCGTGCCTTCAAGAAAGGTATTTTAAGCTTTGGGACACATTGGGATAATTTCAATGCCA
TTGGATCCCTTCTCCGTCTGATCCTGGTCTATCTCAAGCTCTGTTCTCCTCCACCAAACTTCTT
GATTCCAGTTTGAAAAGAAAACTGAAAATGCACTCTATGCAACAACTAATATGCAATGCTGCTT
CTGCATATTAAAAACTGTTTGGGGCAGCAAGGGAGATGGCTCAGTTGGGTATTTCCAATGTGGA
CATTGAAGAGACAAAGTTTTATCTTTTTAAATATGATCTTAGTTTCTAGAGTCCTTGGGTTTCG
ATGGTATCCTAAAACTCTACCTTGTGATGTCTCTCTCGATAGCACAAACACCCATGTGATTGTG
GATTGCACAGACAAGCATTTGACAGAAATACCTGAGGGTATTCCCACTAATACCACCAACCTTA
CCCTTACCATCAACCACATACCAAGCATCTCTCCAGACTCCTTCCATAGGCTGAAGCATCTGGA
GGAGCTTGATTTAAGATGCAACTGTGTACCTATTCTACTGGGGTCCAAAGCCAATGTGTGCACC
AAGAGGCTACAGATTAGACCTGGAAGCTTTAGTGGACTCTCTGACTTAAAATCCCTTTACCTGG
ATGGAAATCAACTTCTAGAGATACCACAGGATCTTCCATCAAGCTTACAGCTTCTGAGCCTTGA
GGCTAACAATATCTTCTCCATCACAAAGGAGAATCTATCAGAACTAGTCAACATTGAATCACTC
TACCTGGGCCAAAACTGTTATTATCGAAATCCTTGCAATGTTTCCTATTCTATTGAAAAAGATG
CTTTCCTAGTTATGAAAAATTTAAAGGTTCTCTCACTAAAAGATAACAATGTCACAGCTGTCCC
CACCATTTTGCCACCTAATTTGCTAGAACTCTATCTTTATAACAACATCATTAAGAGAATCCAA
GAACATGATTTTAATAAGCTCAGCCAGTTGCAAGTTCTTGACCTAAGTGGAAACTGCCCTCGAT
GTTATAATGTCCCATATCCATGTACACCATGTGAAAATAATTCTCCCTTACAGATCCATGACAA
TGCTTTTGATTCATTAACAGAATTAAAAGTTTTACGTCTACACAGTAACTCTCTTCAGCATGTG
CCTGCAGAATGGTTTAAAAACATGAGCAACCTCCAGGAACTAGACCTCTCCCAAAACTACTTAG
CCAGAGAAATTGAAGAAGCCAAATTTTTGAATTCTCTCCCCAACCTTGTCCAGTTGGATCTGTC
TTTCAATTATGAGCTGCAGGTCTACCATGCATCTATTACTTTACCACACTCACTCTCTTCATTG
ACAAAGTTGAAAAATCTGTATATCAAGGGATATGTCTTTAAAGAGCTGAAAGACTCCAGCCTTT
CTGTATTGCACAACCTTTCCAATCTAGAAGTTCTTGACCTTGGCACTAACTTCATAAAAATTGC
TGACCTCAACATATTCCAACAGTTTGAAAACCTCAAATTCATAGACCTTTCAGTGAATAAGATA
TCCCCCTCAGAAGAGTCAAGAGAAGTTGGTTTATGTCCTAATGCCCAAACTTCTGTAGACTGGC
ACGGACCCCAGGTCCTTGAGGCCTTACACTATTTCCGATATGATGAATATGCACGGAGCTGCAG
GTTCAAAAACAAAGAGCCGCCTACTTTTTTGCCTTTGAATGCAGACTGCCACACATATGGGAAG
ACCTTAGACCTAAGTAGAAATAACATATTTTTTATTAAACCCTCTGATTTTAAGCATCTTTCAT
TCCTGAAATGCCTCAATTTGTCAGGAAACGCCATTGGCCAAACTCTTAATGGCAGTGAACTCCA
GCCCTTGAGAGAGCTGCGGTACTTAGACTTCTCCAACAACCGGCTTGATTTACTCTACTCAACA
GCCTTTGAAGAGCTCCAGAATCTGGAAATTCTGGATCTAAGTAGTAACAGCCACTATTTTCAAG
CAGAAGGAATTACTCACATGCTAAACTTTACCAAGAAATTACGGCATCTAGAGAAACTCATGAT
GAATGACAATGACATCTCTACTTCAGCCAGCAGGACCATGGAAAGTGAATCTCTTCGTGTTCTG
GAATTCAGAGGCAACCATTTAGATGTTCTATGGAGAGATGGTGATAACAGATACTTGGACTTCT
TCAAGAATCTGCTCAACTTAGAGGAATTAGATATCTCCAGAAATTCCCTGAATTCCGTGCCTCC
TGGAGTTTTTGAGGGTATGCCACCGAATCTAACGACTCTCTCCTTAGCCAAAAATGGACTCAGA
TCTTTCTCTTGGGGTAGACTTCAGTTACTAAAGCATTTGAAAAATTTGGACCTCAGCCACAACC
AGCTGACAACTGTCCCTGCGAGATTGGCCAACTGTTCCAAAAGTCTCACAAAACTGATTCTTAA
TCATAATCAAATCAGGCAGTTGACAAAATATTTTCTAGAAGATGCTTTGCAATTGCGCTATCTA
GACATCAGTTCAAATAAGATCCAGGTCATTCAGAAGACTAGCTTCCCAGAAAACGTCCTCAACA
ATCTGAACATGTTGCTTTTACATCACAATCGCTTTCTTTGCAACTGTGATGCTGTGTGGTTTGT
CTGGTGGGTTAATCATACAGATGTTACTATTCCATACCTGGCCACTGATGTGACTTGTGCAGGT
CCAGGCGCACACAAAGGTCAAAGTGTCATATCTCTGGATCTATATACATGTGAATTAGATCTCA
CAAACCTGATTCTGTTCTCAGTTTCCATATCATCAGTCCTCTTTCTTATGATAGTTATGACAAC
AAGTCACCTCTTTTTCTGGGATATGTGGTACATTTATTATTTCTGGAAAGCCAAGATAAAGGGT
TATCAACATCTGCAATCAATGGAGTCTTGTTATGATGCTTTTATTGTGTATGACACTAAAAACT
CAGCTGTGACAGAATGGGTTTTGCAGGAGCTGGTGGTTAAATTGGAAGACCCAAGAGAAAAACA
CTTTAATTTGTGTCTAGAAGAAAGAGACTGGCTACCAGGGCAGCCAGTTCTAGAAAACCTTTCC
CAGAGCATACAGCTCAGCAGAAAGACAGTGTTTGTGATGACACAGAAATATGCGAAGACTGAGA
GTTTTAAGATGGCGTTTTATTTGTCCCATCAGAGGCTTATGGATGAAAAGGTGGATGTGATTAT
CTTGATATTCTTGGAAAAGCCTCTTCAGAAGTCTAAGTTTCTTCAGCTCCGGAAGAGGCTCTGC
AGCAGTTCTGTCCTTGAGTGGCCTACAAATCCACAAGCTCACCCATATTTCTGGCAGTGCCTGA
AAAATGCCCTGACTACAGACAATCATGTGGCTTATAGTCAAATGTTCAAGGAAACAGTCTAGCT
CTCTGAAGAATGTCACCACCTAGGACATGCCTGGGTATCTGATTTTTTTCATAAAGGTTTCCAT
AAATGAAGGTCGGATTTTTCCTAACAGCTGCCATAGCTCAGATTAGTGGGAAACCATCAATATA
TGGCAAAGAAATTAGGAAGGGGAGACTGATAGACGATAACTTCTTTCTTCTTTCTGCATGCTGC
CACGCACATTTAAATATCTCCCCCAGCTCAACTATGAAATGCTGTATGAAGAGGGGTGCCTAGG
AGGAAACACAGACTTTCATTTATCTGCATGCAATTGAGAAGAGGCACACATCTACCCTTAAGAA
GTACTAGTATTTTCAGTATTAGGTTAAAAATTATGCAAGTTCTATCCCTGTGATACTGAACTGT
ATCAGAGTTCAATGAAATAAAAGCCCGGAGAACTTCTCGGCAAATTGTGTCACTATCATGTAGT
ATTCACTACACTAGAAAAGCAGTTACAGTTGCTGTACTGTTAGTAGCTGCTTCAGTGCCTCTTA
CTCATTTTCTTGGGGTACATTGATGGGTTCTCTGTGGAAAAAGGGAAACTTATTTTGTCATCCA
TGGACATGATCAACTTATAAGTGGAGAAAATGAAAATATTATTCCCACAAGCCAAGTATGTTCT
TTGCATTTGATGATGATTCATCTGCTGAAATATTCTATGTGCATAACCAGAATACTGTTTCCAA
AGTAAAATGATCTTTAAAATAACTTCATTAATTGATATTAGTTTGTGAACTTGTGCCAATATTT
TTAGGCATCTGTAACTGTAATGCCCCAATATTAGGTGGTACTCATAGTAAGCCCAAAAGGAGGT
GGAAATGTATTCAGTGATATTGGGGATAAGAAAATAAATGGATGACAATTGCATATGTTTATTT
CAGTTCTGAAAAAAGGGGGAAAGACAAGGAGCTTAAGAGAGCATAACATTGAGAAATTATTGGA

hide sequence

RefSeq Acc Id:

XM_039099833 ⟹ XP_038955761

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	30,644,363 - 30,670,796 (+)	NCBI
mRatBN7.2	X	27,027,421 - 27,054,309 (+)	NCBI

RefSeq Acc Id:

XM_039099834 ⟹ XP_038955762

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	30,644,324 - 30,670,796 (+)	NCBI
mRatBN7.2	X	27,027,380 - 27,054,309 (+)	NCBI

RefSeq Acc Id:

XM_063280082 ⟹ XP_063136152

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	30,644,363 - 30,670,796 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001091051	(Get FASTA)	NCBI Sequence Viewer
	XP_017457568	(Get FASTA)	NCBI Sequence Viewer
	XP_017457569	(Get FASTA)	NCBI Sequence Viewer
	XP_038955761	(Get FASTA)	NCBI Sequence Viewer
	XP_038955762	(Get FASTA)	NCBI Sequence Viewer
	XP_063136152	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ABM92443	(Get FASTA)	NCBI Sequence Viewer
	EDL90569	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005620
	ENSRNOP00000005620.5
	ENSRNOP00000089883.1
	ENSRNOP00000094649
	ENSRNOP00000094649.1
GenBank Protein	QQJ42888	(Get FASTA)	NCBI Sequence Viewer
	QQJ42889	(Get FASTA)	NCBI Sequence Viewer
	QQJ42890	(Get FASTA)	NCBI Sequence Viewer
	QQJ42891	(Get FASTA)	NCBI Sequence Viewer
	QQJ42892	(Get FASTA)	NCBI Sequence Viewer
	QQJ42893	(Get FASTA)	NCBI Sequence Viewer
	QQJ42894	(Get FASTA)	NCBI Sequence Viewer
	QQJ42895	(Get FASTA)	NCBI Sequence Viewer
	QQJ42896	(Get FASTA)	NCBI Sequence Viewer
	QQJ42897	(Get FASTA)	NCBI Sequence Viewer
	QQJ42898	(Get FASTA)	NCBI Sequence Viewer
	QQJ42899	(Get FASTA)	NCBI Sequence Viewer
	QQJ42900	(Get FASTA)	NCBI Sequence Viewer
	QQJ42901	(Get FASTA)	NCBI Sequence Viewer
	QQJ42902	(Get FASTA)	NCBI Sequence Viewer
	QQJ42903	(Get FASTA)	NCBI Sequence Viewer
	QQJ42904	(Get FASTA)	NCBI Sequence Viewer
	QQJ42905	(Get FASTA)	NCBI Sequence Viewer
	QQJ42906	(Get FASTA)	NCBI Sequence Viewer
	QQJ42907	(Get FASTA)	NCBI Sequence Viewer
	QQJ42908	(Get FASTA)	NCBI Sequence Viewer
	QQJ42909	(Get FASTA)	NCBI Sequence Viewer
	QQJ42910	(Get FASTA)	NCBI Sequence Viewer
	QQJ42911	(Get FASTA)	NCBI Sequence Viewer
	QQJ42912	(Get FASTA)	NCBI Sequence Viewer
	QQJ42913	(Get FASTA)	NCBI Sequence Viewer
	QQJ42914	(Get FASTA)	NCBI Sequence Viewer
	QQJ42915	(Get FASTA)	NCBI Sequence Viewer
	QQJ42916	(Get FASTA)	NCBI Sequence Viewer
	QQJ42917	(Get FASTA)	NCBI Sequence Viewer
	QQJ42918	(Get FASTA)	NCBI Sequence Viewer
	QQJ42919	(Get FASTA)	NCBI Sequence Viewer
	QQJ42920	(Get FASTA)	NCBI Sequence Viewer
	QQJ42921	(Get FASTA)	NCBI Sequence Viewer
	QQJ42922	(Get FASTA)	NCBI Sequence Viewer
	QQJ42923	(Get FASTA)	NCBI Sequence Viewer
	QQJ42924	(Get FASTA)	NCBI Sequence Viewer
	QQJ42925	(Get FASTA)	NCBI Sequence Viewer
	QQJ42926	(Get FASTA)	NCBI Sequence Viewer
	QQJ42927	(Get FASTA)	NCBI Sequence Viewer
	QQJ42928	(Get FASTA)	NCBI Sequence Viewer
	QQJ42929	(Get FASTA)	NCBI Sequence Viewer
	QQJ42930	(Get FASTA)	NCBI Sequence Viewer
	QQJ42931	(Get FASTA)	NCBI Sequence Viewer
	QQJ42932	(Get FASTA)	NCBI Sequence Viewer
	QQJ42933	(Get FASTA)	NCBI Sequence Viewer
	QQJ42934	(Get FASTA)	NCBI Sequence Viewer
	QQJ42935	(Get FASTA)	NCBI Sequence Viewer
	QQJ42936	(Get FASTA)	NCBI Sequence Viewer
	QQJ42937	(Get FASTA)	NCBI Sequence Viewer
	QQJ42938	(Get FASTA)	NCBI Sequence Viewer
	QQJ42939	(Get FASTA)	NCBI Sequence Viewer
	QQJ42940	(Get FASTA)	NCBI Sequence Viewer
	QQJ42941	(Get FASTA)	NCBI Sequence Viewer
	QQJ42942	(Get FASTA)	NCBI Sequence Viewer
	QQJ42943	(Get FASTA)	NCBI Sequence Viewer
	QQJ42944	(Get FASTA)	NCBI Sequence Viewer
	QQJ42945	(Get FASTA)	NCBI Sequence Viewer
	QQJ42946	(Get FASTA)	NCBI Sequence Viewer
	QQJ42947	(Get FASTA)	NCBI Sequence Viewer
	QQJ42948	(Get FASTA)	NCBI Sequence Viewer
	QQJ42949	(Get FASTA)	NCBI Sequence Viewer
	QQJ42950	(Get FASTA)	NCBI Sequence Viewer
	QQJ42951	(Get FASTA)	NCBI Sequence Viewer
	QQJ42952	(Get FASTA)	NCBI Sequence Viewer
	QQJ42953	(Get FASTA)	NCBI Sequence Viewer
	QQJ42954	(Get FASTA)	NCBI Sequence Viewer
	QQJ42955	(Get FASTA)	NCBI Sequence Viewer
	QQJ42956	(Get FASTA)	NCBI Sequence Viewer
	QQJ42957	(Get FASTA)	NCBI Sequence Viewer
	QQJ42958	(Get FASTA)	NCBI Sequence Viewer
	QQJ42959	(Get FASTA)	NCBI Sequence Viewer
	QQJ42960	(Get FASTA)	NCBI Sequence Viewer
	QQJ42961	(Get FASTA)	NCBI Sequence Viewer
	QQJ42962	(Get FASTA)	NCBI Sequence Viewer
	QQJ42963	(Get FASTA)	NCBI Sequence Viewer
	QQJ42964	(Get FASTA)	NCBI Sequence Viewer
	QQJ42965	(Get FASTA)	NCBI Sequence Viewer
	QQJ42966	(Get FASTA)	NCBI Sequence Viewer
	QQJ42967	(Get FASTA)	NCBI Sequence Viewer
	QQJ42968	(Get FASTA)	NCBI Sequence Viewer
	QQJ42969	(Get FASTA)	NCBI Sequence Viewer
	QQJ42970	(Get FASTA)	NCBI Sequence Viewer
	QQJ42971	(Get FASTA)	NCBI Sequence Viewer
	QQJ42972	(Get FASTA)	NCBI Sequence Viewer
	QQJ42973	(Get FASTA)	NCBI Sequence Viewer
	QQJ42974	(Get FASTA)	NCBI Sequence Viewer
	QQJ42975	(Get FASTA)	NCBI Sequence Viewer
	QQJ42976	(Get FASTA)	NCBI Sequence Viewer
	QQJ42977	(Get FASTA)	NCBI Sequence Viewer
	QQJ42978	(Get FASTA)	NCBI Sequence Viewer
	QQJ42979	(Get FASTA)	NCBI Sequence Viewer
	QQJ42980	(Get FASTA)	NCBI Sequence Viewer
	QQJ42981	(Get FASTA)	NCBI Sequence Viewer
	QQJ42982	(Get FASTA)	NCBI Sequence Viewer
	QQJ42983	(Get FASTA)	NCBI Sequence Viewer
	QQJ42984	(Get FASTA)	NCBI Sequence Viewer
	QQJ42985	(Get FASTA)	NCBI Sequence Viewer
	QQJ42986	(Get FASTA)	NCBI Sequence Viewer
	QQJ42987	(Get FASTA)	NCBI Sequence Viewer
	QQJ42988	(Get FASTA)	NCBI Sequence Viewer
	QQJ42989	(Get FASTA)	NCBI Sequence Viewer
	QQJ42990	(Get FASTA)	NCBI Sequence Viewer
	QQJ42991	(Get FASTA)	NCBI Sequence Viewer
	QQJ42992	(Get FASTA)	NCBI Sequence Viewer
	QQJ42993	(Get FASTA)	NCBI Sequence Viewer
	QQJ42994	(Get FASTA)	NCBI Sequence Viewer
	QQJ42995	(Get FASTA)	NCBI Sequence Viewer
	QQJ42996	(Get FASTA)	NCBI Sequence Viewer
	QQJ42997	(Get FASTA)	NCBI Sequence Viewer
	QQJ42998	(Get FASTA)	NCBI Sequence Viewer
	QQJ42999	(Get FASTA)	NCBI Sequence Viewer
	QQJ43000	(Get FASTA)	NCBI Sequence Viewer
	QQJ43001	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001091051 ⟸ NM_001097582

- UniProtKB:

A5H2Z9 (UniProtKB/TrEMBL), U5LJA3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVFPMWTLKRQSFIFLNMILVSRVLGFRWYPKTLPCDVSLDSTNTHVIVDCTDKHLTEIPEGIP
TNTTNLTLTINHIPSISPDSFHRLKHLEELDLRCNCVPILLGSKANVCTKRLQIRPGSFSGLSD
LKSLYLDGNQLLEIPQDLPSSLQLLSLEANNIFSITKENLSELVNIESLYLGQNCYYRNPCNVS
YSIEKDAFLVMKNLKVLSLKDNNVTAVPTILPPNLLELYLYNNIIKRIQEHDFNKLSQLQVLDL
SGNCPRCYNVPYPCTPCENNSPLQIHDNAFDSLTELKVLRLHSNSLQHVPAEWFKNMSNLQELD
LSQNYLAREIEEAKFLNSLPNLVQLDLSFNYELQVYHASITLPHSLSSLTKLKNLYIKGYVFKE
LKDSSLSVLHNLSNLEVLDLGTNFIKIADLNIFQQFENLKFIDLSVNKISPSEESREVGLCPNA
QTSVDWHGPQVLEALHYFRYDEYARSCRFKNKEPPTFLPLNADCHTYGKTLDLSRNNIFFIKPS
DFKHLSFLKCLNLSGNAIGQTLNGSELQPLRELRYLDFSNNRLDLLYSTAFEELQNLEILDLSS
NSHYFQAEGITHMLNFTKKLRHLEKLMMNDNDISTSASRTMESESLRVLEFRGNHLDVLWRDGD
NRYLDFFKNLLNLEELDISRNSLNSVPPGVFEGMPPNLTTLSLAKNGLRSFSWGRLQLLKHLKN
LDLSHNQLTTVPARLANCSKSLTKLILNHNQIRQLTKYFLEDALQLRYLDISSNKIQVIQKTSF
PENVLNNLNMLLLHHNRFLCNCDAVWFVWWVNHTDVTIPYLATDVTCAGPGAHKGQSVISLDLY
TCELDLTNLILFSVSISSVLFLMIVMTTSHLFFWDMWYIYYFWKAKIKGYQHLQSMESCYDAFI
VYDTKNSAVTEWVLQELVVKLEDPREKHFNLCLEERDWLPGQPVLENLSQSIQLSRKTVFVMTQ
KYAKTESFKMAFYLSHQRLMDEKVDVIILIFLEKPLQKSKFLQLRKRLCSSSVLEWPTNPQAHP
YFWQCLKNALTTDNHVAYSQMFKETV

hide sequence

RefSeq Acc Id:	XP_017457569 ⟸ XM_017602080
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AM21 (UniProtKB/TrEMBL), U5LJA3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLLHIKNCLGQQGRWLSWVFPMWTLKRQSFIFLNMILVSRVLGFRWYPKTLPCDVSLDSTNTH VIVDCTDKHLTEIPEGIPTNTTNLTLTINHIPSISPDSFHRLKHLEELDLRCNCVPILLGSKAN VCTKRLQIRPGSFSGLSDLKSLYLDGNQLLEIPQDLPSSLQLLSLEANNIFSITKENLSELVNI ESLYLGQNCYYRNPCNVSYSIEKDAFLVMKNLKVLSLKDNNVTAVPTILPPNLLELYLYNNIIK RIQEHDFNKLSQLQVLDLSGNCPRCYNVPYPCTPCENNSPLQIHDNAFDSLTELKVLRLHSNSL QHVPAEWFKNMSNLQELDLSQNYLAREIEEAKFLNSLPNLVQLDLSFNYELQVYHASITLPHSL SSLTKLKNLYIKGYVFKELKDSSLSVLHNLSNLEVLDLGTNFIKIADLNIFQQFENLKFIDLSV NKISPSEESREVGLCPNAQTSVDWHGPQVLEALHYFRYDEYARSCRFKNKEPPTFLPLNADCHT YGKTLDLSRNNIFFIKPSDFKHLSFLKCLNLSGNAIGQTLNGSELQPLRELRYLDFSNNRLDLL YSTAFEELQNLEILDLSSNSHYFQAEGITHMLNFTKKLRHLEKLMMNDNDISTSASRTMESESL RVLEFRGNHLDVLWRDGDNRYLDFFKNLLNLEELDISRNSLNSVPPGVFEGMPPNLTTLSLAKN GLRSFSWGRLQLLKHLKNLDLSHNQLTTVPARLANCSKSLTKLILNHNQIRQLTKYFLEDALQL RYLDISSNKIQVIQKTSFPENVLNNLNMLLLHHNRFLCNCDAVWFVWWVNHTDVTIPYLATDVT CAGPGAHKGQSVISLDLYTCELDLTNLILFSVSISSVLFLMIVMTTSHLFFWDMWYIYYFWKAK IKGYQHLQSMESCYDAFIVYDTKNSAVTEWVLQELVVKLEDPREKHFNLCLEERDWLPGQPVLE NLSQSIQLSRKTVFVMTQKYAKTESFKMAFYLSHQRLMDEKVDVIILIFLEKPLQKSKFLQLRK RLCSSSVLEWPTNPQAHPYFWQCLKNALTTDNHVAYSQMFKETV hide sequence

RefSeq Acc Id:	XP_017457568 ⟸ XM_017602079
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AM21 (UniProtKB/TrEMBL), U5LJA3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLLHIKNCLGQQGRWLSWVFPMWTLKRQSFIFLNMILVSRVLGFRWYPKTLPCDVSLDSTNTH VIVDCTDKHLTEIPEGIPTNTTNLTLTINHIPSISPDSFHRLKHLEELDLRCNCVPILLGSKAN VCTKRLQIRPGSFSGLSDLKSLYLDGNQLLEIPQDLPSSLQLLSLEANNIFSITKENLSELVNI ESLYLGQNCYYRNPCNVSYSIEKDAFLVMKNLKVLSLKDNNVTAVPTILPPNLLELYLYNNIIK RIQEHDFNKLSQLQVLDLSGNCPRCYNVPYPCTPCENNSPLQIHDNAFDSLTELKVLRLHSNSL QHVPAEWFKNMSNLQELDLSQNYLAREIEEAKFLNSLPNLVQLDLSFNYELQVYHASITLPHSL SSLTKLKNLYIKGYVFKELKDSSLSVLHNLSNLEVLDLGTNFIKIADLNIFQQFENLKFIDLSV NKISPSEESREVGLCPNAQTSVDWHGPQVLEALHYFRYDEYARSCRFKNKEPPTFLPLNADCHT YGKTLDLSRNNIFFIKPSDFKHLSFLKCLNLSGNAIGQTLNGSELQPLRELRYLDFSNNRLDLL YSTAFEELQNLEILDLSSNSHYFQAEGITHMLNFTKKLRHLEKLMMNDNDISTSASRTMESESL RVLEFRGNHLDVLWRDGDNRYLDFFKNLLNLEELDISRNSLNSVPPGVFEGMPPNLTTLSLAKN GLRSFSWGRLQLLKHLKNLDLSHNQLTTVPARLANCSKSLTKLILNHNQIRQLTKYFLEDALQL RYLDISSNKIQVIQKTSFPENVLNNLNMLLLHHNRFLCNCDAVWFVWWVNHTDVTIPYLATDVT CAGPGAHKGQSVISLDLYTCELDLTNLILFSVSISSVLFLMIVMTTSHLFFWDMWYIYYFWKAK IKGYQHLQSMESCYDAFIVYDTKNSAVTEWVLQELVVKLEDPREKHFNLCLEERDWLPGQPVLE NLSQSIQLSRKTVFVMTQKYAKTESFKMAFYLSHQRLMDEKVDVIILIFLEKPLQKSKFLQLRK RLCSSSVLEWPTNPQAHPYFWQCLKNALTTDNHVAYSQMFKETV hide sequence

RefSeq Acc Id:

ENSRNOP00000005620 ⟸ ENSRNOT00000005620

RefSeq Acc Id:	XP_038955762 ⟸ XM_039099834
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6GHR4 (UniProtKB/TrEMBL), A6K2G1 (UniProtKB/TrEMBL), U5LJA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955761 ⟸ XM_039099833
- Peptide Label:	isoform X2
- UniProtKB:	A5H2Z9 (UniProtKB/TrEMBL), U5LJA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000089883 ⟸ ENSRNOT00000104011

RefSeq Acc Id:

ENSRNOP00000094649 ⟸ ENSRNOT00000118923

RefSeq Acc Id:	XP_063136152 ⟸ XM_063280082
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6GHR4 (UniProtKB/TrEMBL), A6K2G1 (UniProtKB/TrEMBL)

Protein Domains

TIR

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A5H2Z9-F1-model_v2	AlphaFold	A5H2Z9	1-1050	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701784

Promoter ID:

EPDNEW_R12307

Type:

single initiation site

Name:

Tlr7_1

Description:

toll-like receptor 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	28,486,864 - 28,486,924	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563357	AgrOrtholog
BioCyc Gene	G2FUF-2661	BioCyc
Ensembl Genes	ENSRNOG00000004249	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005620.7	UniProtKB/TrEMBL
	ENSRNOT00000104011.1	UniProtKB/TrEMBL
	ENSRNOT00000118923.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.10140	UniProtKB/TrEMBL
	3.80.10.10	UniProtKB/TrEMBL
InterPro	Cys-rich_flank_reg_C	UniProtKB/TrEMBL
	L_dom-like	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRR_12	UniProtKB/TrEMBL
	Toll-Interleukin_rcpt	UniProtKB/TrEMBL
	Toll_tir_struct_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:317468	UniProtKB/TrEMBL
NCBI Gene	317468	ENTREZGENE
PANTHER	PTHR47410:SF2	UniProtKB/TrEMBL
	TOLL-LIKE RECEPTOR 7-RELATED	UniProtKB/TrEMBL
Pfam	LRR_1	UniProtKB/TrEMBL
	LRR_12	UniProtKB/TrEMBL
	LRR_8	UniProtKB/TrEMBL
	TIR	UniProtKB/TrEMBL
PhenoGen	Tlr7	PhenoGen
PRINTS	INTRLKN1R1F	UniProtKB/TrEMBL
	LEURICHRPT	UniProtKB/TrEMBL
PROSITE	LRR	UniProtKB/TrEMBL
	TIR	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004249	RatGTEx
SMART	LRR_SD22	UniProtKB/TrEMBL
	LRR_TYP	UniProtKB/TrEMBL
	LRRCT	UniProtKB/TrEMBL
	TIR	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
	RNI-like	UniProtKB/TrEMBL
	TIR	UniProtKB/TrEMBL
UniProt	A0A8I6AM21	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GHR4	ENTREZGENE, UniProtKB/TrEMBL
	A5H2Z9	ENTREZGENE, UniProtKB/TrEMBL
	A6K2G1	ENTREZGENE, UniProtKB/TrEMBL
	U5LJA3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Tlr7	toll-like receptor 7	Tlr7_predicted	toll-like receptor 7 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Tlr7_predicted	toll-like receptor 7 (predicted)	RGD1563357_predicted	similar to toll-like receptor 7 (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1563357_predicted	similar to toll-like receptor 7 (predicted)	LOC317468	similar to toll-like receptor 7	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC317468	similar to toll-like receptor 7			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)