Tmem164 (transmembrane protein 164) - Rat Genome Database

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Gene: Tmem164 (transmembrane protein 164) Rattus norvegicus
Analyze
Symbol: Tmem164
Name: transmembrane protein 164
RGD ID: 1563286
Description: Predicted to be involved in positive regulation of ferroptosis. Predicted to be located in membrane. Orthologous to human TMEM164 (transmembrane protein 164); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC367763; RGD1563286; similar to Expressed sequence AW547186
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X111,084,830 - 111,245,419 (+)NCBIGRCr8
mRatBN7.2X106,288,019 - 106,448,642 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX106,289,371 - 106,448,640 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX108,421,098 - 108,580,507 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X111,920,256 - 112,079,664 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X109,486,538 - 109,645,928 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X113,947,355 - 114,110,064 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX113,948,654 - 114,110,062 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X112,397,269 - 112,556,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X35,712,709 - 35,875,467 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX105,703,068 - 105,862,182 (+)NCBICelera
Cytogenetic MapXq33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Tmem164
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X111,084,830 - 111,245,419 (+)NCBIGRCr8
mRatBN7.2X106,288,019 - 106,448,642 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX106,289,371 - 106,448,640 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX108,421,098 - 108,580,507 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X111,920,256 - 112,079,664 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X109,486,538 - 109,645,928 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X113,947,355 - 114,110,064 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX113,948,654 - 114,110,062 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X112,397,269 - 112,556,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X35,712,709 - 35,875,467 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX105,703,068 - 105,862,182 (+)NCBICelera
Cytogenetic MapXq33NCBI
TMEM164
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X110,002,369 - 110,184,251 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX110,002,631 - 110,182,734 (+)EnsemblGRCh38hg38GRCh38
GRCh37X109,245,891 - 109,427,479 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X109,133,018 - 109,303,430 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX109,725,502 - 109,900,639 (+)NCBICelera
Cytogenetic MapXq23NCBI
HuRefX98,867,226 - 99,041,172 (+)NCBIHuRef
CHM1_1X109,157,131 - 109,332,259 (+)NCBICHM1_1
T2T-CHM13v2.0X108,450,198 - 108,632,159 (+)NCBIT2T-CHM13v2.0
Tmem164
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X141,463,343 - 141,626,490 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX141,464,402 - 141,626,490 (+)EnsemblGRCm39 Ensembl
GRCm38X142,680,347 - 142,843,494 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX142,681,406 - 142,843,494 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X139,115,961 - 139,272,781 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X137,927,786 - 138,084,606 (+)NCBIMGSCv36mm8
CeleraX126,675,055 - 126,831,458 (+)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX63.54NCBI
Tmem164
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554905,673,145 - 5,850,427 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554905,673,204 - 5,850,427 (-)NCBIChiLan1.0ChiLan1.0
TMEM164
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X109,494,171 - 109,687,489 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X109,497,787 - 109,682,875 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X99,111,266 - 99,294,224 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X109,581,210 - 109,756,087 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX109,581,210 - 109,756,087 (+)Ensemblpanpan1.1panPan2
TMEM164
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X83,219,530 - 83,384,900 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX83,219,505 - 83,381,564 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX69,262,609 - 69,461,090 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X84,835,633 - 85,033,382 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX84,870,511 - 85,033,490 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X82,312,178 - 82,510,872 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X84,006,359 - 84,202,570 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X83,835,339 - 84,035,385 (+)NCBIUU_Cfam_GSD_1.0
Tmem164
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X82,458,485 - 82,616,962 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364995,042,638 - 5,199,433 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM164
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX90,106,036 - 90,289,669 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X90,105,293 - 90,289,674 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X103,807,395 - 103,845,060 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM164
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X97,833,179 - 98,007,700 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX97,833,496 - 98,003,343 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606523,036,283 - 23,225,574 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem164
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248035,744,703 - 5,914,327 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248035,744,576 - 5,914,749 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tmem164
505 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1901
Count of miRNA genes:394
Interacting mature miRNAs:586
Transcripts:ENSRNOT00000068431
Prediction methods:Microtar, Miranda, Pita, Pita,Microtar, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat

Markers in Region
DXGot161  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X106,300,074 - 106,300,283 (+)MAPPERmRatBN7.2
Rnor_6.0X113,959,543 - 113,959,751NCBIRnor6.0
Rnor_5.0X112,407,718 - 112,407,926UniSTSRnor5.0
RGSC_v3.4X35,864,989 - 35,865,197UniSTSRGSC3.4
CeleraX105,713,768 - 105,713,976UniSTS
Cytogenetic MapXq14UniSTS
RH129607  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X106,296,855 - 106,297,054 (+)MAPPERmRatBN7.2
Rnor_6.0X113,956,324 - 113,956,522NCBIRnor6.0
Rnor_5.0X112,404,499 - 112,404,697UniSTSRnor5.0
RGSC_v3.4X35,868,218 - 35,868,416UniSTSRGSC3.4
CeleraX105,710,549 - 105,710,747UniSTS
RH 3.4 Map71131.62UniSTS
Cytogenetic MapXq14UniSTS
RH144390  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X106,438,054 - 106,438,319 (+)MAPPERmRatBN7.2
Rnor_6.0X114,099,476 - 114,099,740NCBIRnor6.0
Rnor_5.0X112,546,110 - 112,546,374UniSTSRnor5.0
RGSC_v3.4X35,723,017 - 35,723,281UniSTSRGSC3.4
CeleraX105,851,597 - 105,851,861UniSTS
Cytogenetic MapXq14UniSTS
BE113681  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X106,426,400 - 106,426,570 (+)MAPPERmRatBN7.2
Rnor_6.0X114,087,817 - 114,087,986NCBIRnor6.0
Rnor_5.0X112,534,451 - 112,534,620UniSTSRnor5.0
RGSC_v3.4X35,734,766 - 35,734,935UniSTSRGSC3.4
CeleraX105,839,943 - 105,840,112UniSTS
Cytogenetic MapXq14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 28 12 19 12 74 34 37 11
Low 8 29 29 29 8 11 1 4 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000068431   ⟹   ENSRNOP00000062249
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX106,289,371 - 106,448,640 (+)Ensembl
Rnor_6.0 EnsemblX113,948,654 - 114,110,062 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108646   ⟹   ENSRNOP00000084573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX106,289,371 - 106,448,640 (+)Ensembl
RefSeq Acc Id: NM_001109014   ⟹   NP_001102484
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X111,086,180 - 111,245,417 (+)NCBI
mRatBN7.2X106,289,371 - 106,448,640 (+)NCBI
Rnor_6.0X113,948,656 - 114,110,062 (+)NCBI
Rnor_5.0X112,397,269 - 112,556,696 (+)NCBI
RGSC_v3.4X35,712,709 - 35,875,467 (-)RGD
CeleraX105,703,068 - 105,862,182 (+)RGD
Sequence:
RefSeq Acc Id: XM_008773426   ⟹   XP_008771648
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X111,085,722 - 111,245,419 (+)NCBI
mRatBN7.2X106,288,891 - 106,448,642 (+)NCBI
Rnor_6.0X113,948,133 - 114,110,064 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008773428   ⟹   XP_008771650
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X111,084,830 - 111,245,419 (+)NCBI
mRatBN7.2X106,288,019 - 106,448,642 (+)NCBI
Rnor_6.0X113,947,355 - 114,110,064 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039099938   ⟹   XP_038955866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X111,085,731 - 111,245,419 (+)NCBI
mRatBN7.2X106,343,034 - 106,448,642 (+)NCBI
RefSeq Acc Id: XM_039099940   ⟹   XP_038955868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X111,085,667 - 111,245,419 (+)NCBI
mRatBN7.2X106,288,857 - 106,448,642 (+)NCBI
RefSeq Acc Id: XM_039099941   ⟹   XP_038955869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X111,085,718 - 111,245,419 (+)NCBI
mRatBN7.2X106,288,855 - 106,448,642 (+)NCBI
RefSeq Acc Id: XM_063280173   ⟹   XP_063136243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X111,085,889 - 111,245,419 (+)NCBI
RefSeq Acc Id: XM_063280174   ⟹   XP_063136244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X111,085,874 - 111,135,622 (+)NCBI
RefSeq Acc Id: XM_063280175   ⟹   XP_063136245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X111,085,899 - 111,245,419 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001102484   ⟸   NM_001109014
- UniProtKB: D3ZFX1 (UniProtKB/TrEMBL),   A6KG75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771650   ⟸   XM_008773428
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008771648   ⟸   XM_008773426
- Peptide Label: isoform X1
- UniProtKB: D3ZFX1 (UniProtKB/TrEMBL),   A6KG75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000062249   ⟸   ENSRNOT00000068431
RefSeq Acc Id: XP_038955869   ⟸   XM_039099941
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038955868   ⟸   XM_039099940
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038955866   ⟸   XM_039099938
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000084573   ⟸   ENSRNOT00000108646
RefSeq Acc Id: XP_063136244   ⟸   XM_063280174
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063136243   ⟸   XM_063280173
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063136245   ⟸   XM_063280175
- Peptide Label: isoform X5

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFX1-F1-model_v2 AlphaFold D3ZFX1 1-296 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701964
Promoter ID:EPDNEW_R12488
Type:single initiation site
Name:Tmem164_1
Description:transmembrane protein 164
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X113,948,673 - 113,948,733EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563286 AgrOrtholog
BioCyc Gene G2FUF-1511 BioCyc
Ensembl Genes ENSRNOG00000012787 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068431 ENTREZGENE
  ENSRNOT00000068431.3 UniProtKB/TrEMBL
  ENSRNOT00000108646.1 UniProtKB/TrEMBL
InterPro TMEM164 UniProtKB/TrEMBL
KEGG Report rno:367763 UniProtKB/TrEMBL
NCBI Gene 367763 ENTREZGENE
PANTHER PTHR20948 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 164 UniProtKB/TrEMBL
Pfam TMEM164 UniProtKB/TrEMBL
PhenoGen Tmem164 PhenoGen
RatGTEx ENSRNOG00000012787 RatGTEx
UniProt A0A8I6A1M0_RAT UniProtKB/TrEMBL
  A6KG75 ENTREZGENE, UniProtKB/TrEMBL
  A6KG77_RAT UniProtKB/TrEMBL
  D3ZFX1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Tmem164  transmembrane protein 164  RGD1563286_predicted  similar to Expressed sequence AW547186 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563286_predicted  similar to Expressed sequence AW547186 (predicted)  LOC367763  similar to Expressed sequence AW547186  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC367763  similar to Expressed sequence AW547186      Symbol and Name status set to provisional 70820 PROVISIONAL