Ythdc2 (YTH N6-methyladenosine RNA binding protein C2) - Rat Genome Database

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Gene: Ythdc2 (YTH N6-methyladenosine RNA binding protein C2) Rattus norvegicus
Analyze
Symbol: Ythdc2
Name: YTH N6-methyladenosine RNA binding protein C2 (Ensembl:YTH domain containing 2)
RGD ID: 1563192
Description: Predicted to enable several functions, including 3'-5' RNA helicase activity; N6-methyladenosine-containing RNA reader activity; and RNA polymerase binding activity. Predicted to be involved in several processes, including germ cell development; germline cell cycle switching, mitotic to meiotic cell cycle; and positive regulation by host of viral genome replication. Predicted to be located in endoplasmic reticulum and ribonucleoprotein granule. Orthologous to human YTHDC2 (YTH N6-methyladenosine RNA binding protein C2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3'-5' RNA helicase YTHDC2; LOC100909599; LOC307446; probable ATP-dependent RNA helicase YTHDC2; probable ATP-dependent RNA helicase YTHDC2-like; RGD1563192; similar to YTH domain containing 2; YTH domain containing 2; YTH domain containing 2-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81837,517,286 - 37,582,551 (+)NCBIGRCr8
mRatBN7.21837,266,559 - 37,331,681 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1837,265,836 - 37,331,023 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01182,072,386 - 182,141,399 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1182,085,899 - 182,140,570 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01189,044,738 - 189,112,000 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41838,587,783 - 38,600,826NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map18q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090   PMID:21559518   PMID:22658674   PMID:22681889   PMID:25931508   PMID:26318451   PMID:28380054   PMID:28809393   PMID:29033321   PMID:29087293   PMID:29360036   PMID:38465865  


Genomics

Comparative Map Data
Ythdc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81837,517,286 - 37,582,551 (+)NCBIGRCr8
mRatBN7.21837,266,559 - 37,331,681 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1837,265,836 - 37,331,023 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01182,072,386 - 182,141,399 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1182,085,899 - 182,140,570 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01189,044,738 - 189,112,000 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41838,587,783 - 38,600,826NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map18q11NCBI
YTHDC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385113,513,694 - 113,595,284 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5113,513,694 - 113,595,285 (+)EnsemblGRCh38hg38GRCh38
GRCh375112,849,391 - 112,930,981 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365112,877,309 - 112,958,880 (+)NCBINCBI36Build 36hg18NCBI36
Build 345112,877,308 - 112,958,878NCBI
Celera5108,797,205 - 108,878,222 (+)NCBICelera
Cytogenetic Map5q22.2NCBI
HuRef5108,032,302 - 108,113,324 (+)NCBIHuRef
CHM1_15112,282,881 - 112,363,984 (+)NCBICHM1_1
T2T-CHM13v2.05114,026,401 - 114,108,085 (+)NCBIT2T-CHM13v2.0
Ythdc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391844,961,521 - 45,022,782 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1844,960,813 - 45,022,791 (+)EnsemblGRCm39 Ensembl
GRCm381844,827,730 - 44,889,720 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1844,827,746 - 44,889,724 (+)EnsemblGRCm38mm10GRCm38
MGSCv371844,988,319 - 45,049,374 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361844,954,018 - 45,015,050 (+)NCBIMGSCv36mm8
Celera1846,216,119 - 46,277,313 (+)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1823.81NCBI
Ythdc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540833,381,023 - 33,446,239 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540833,380,822 - 33,448,188 (+)NCBIChiLan1.0ChiLan1.0
YTHDC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24108,766,777 - 108,848,231 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15106,920,507 - 107,001,883 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05108,870,417 - 108,951,848 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15114,672,807 - 114,754,153 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5114,672,839 - 114,754,153 (+)Ensemblpanpan1.1panPan2
YTHDC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1113,537,571 - 3,613,455 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl113,536,854 - 3,612,282 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha113,680,238 - 3,758,386 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0113,513,300 - 3,591,474 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl113,513,269 - 3,590,175 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1113,480,805 - 3,559,185 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0113,559,723 - 3,637,964 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0113,803,442 - 3,881,614 (+)NCBIUU_Cfam_GSD_1.0
Ythdc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213126,381,953 - 126,456,245 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365975,399,911 - 5,479,525 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365975,406,866 - 5,481,155 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
YTHDC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2117,897,260 - 118,092,175 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12118,003,402 - 118,092,176 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22122,613,340 - 122,660,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
YTHDC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12316,800,515 - 16,880,983 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2316,800,558 - 16,880,952 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603461,548,250 - 61,633,930 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ythdc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247338,506,626 - 8,583,191 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247338,507,783 - 8,582,836 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ythdc2
133 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:20
Count of miRNA genes:20
Interacting mature miRNAs:20
Transcripts:ENSRNOT00000060098
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182654808246969551Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182654808246969551Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182654808246969551Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182654808246969551Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182654808246969551Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182654808246969551Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182654808246969551Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183127168160377755Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183135940859796643Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183135940870263868Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135953059796478Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat

Markers in Region
RH138790  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21837,266,134 - 37,266,338 (-)MAPPERmRatBN7.2
Rnor_6.0111,995,222 - 11,995,425NCBIRnor6.0
Rnor_6.01182,140,821 - 182,141,024NCBIRnor6.0
Rnor_5.01189,111,435 - 189,111,638UniSTSRnor5.0
Rnor_5.0113,584,530 - 13,584,733UniSTSRnor5.0
RGSC_v3.41838,587,329 - 38,587,532UniSTSRGSC3.4
Cytogenetic Map18q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 17 1 17 1 43 7 16 8
Low 3 42 40 40 2 40 8 10 31 28 25 3 8
Below cutoff 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000060098   ⟹   ENSRNOP00000056847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1837,265,836 - 37,318,375 (+)Ensembl
Rnor_6.0 Ensembl1182,085,899 - 182,140,570 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000078330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl111,982,257 - 11,995,787 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000086689
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl111,982,257 - 11,995,787 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101197   ⟹   ENSRNOP00000078225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1837,265,836 - 37,331,023 (+)Ensembl
RefSeq Acc Id: NM_001427202   ⟹   NP_001414131
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81837,517,286 - 37,582,550 (+)NCBI
RefSeq Acc Id: XM_039097251   ⟹   XP_038953179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81837,517,646 - 37,582,551 (+)NCBI
mRatBN7.21837,266,772 - 37,331,681 (+)NCBI
RefSeq Acc Id: XM_039097252   ⟹   XP_038953180
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81837,529,353 - 37,582,551 (+)NCBI
mRatBN7.21837,278,490 - 37,331,681 (+)NCBI
RefSeq Acc Id: XM_063277359   ⟹   XP_063133429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81837,534,188 - 37,582,551 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001414131 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953179 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953180 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133429 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL84747 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000056847.5
  ENSRNOP00000078225.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000056847   ⟸   ENSRNOT00000060098
RefSeq Acc Id: XP_038953179   ⟸   XM_039097251
- Peptide Label: isoform X1
- UniProtKB: D3ZIV8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953180   ⟸   XM_039097252
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000078225   ⟸   ENSRNOT00000101197
RefSeq Acc Id: NP_001414131   ⟸   NM_001427202
- UniProtKB: A0A8I5ZKH1 (UniProtKB/TrEMBL),   D3ZIV8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133429   ⟸   XM_063277359
- Peptide Label: isoform X3
Protein Domains
Helicase ATP-binding   Helicase C-terminal   R3H   YTH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZIV8-F1-model_v2 AlphaFold D3ZIV8 1-1276 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563192 AgrOrtholog
BioCyc Gene G2FUF-7656 BioCyc
Ensembl Genes ENSRNOG00000039241 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000059898 Ensembl
Ensembl Transcript ENSRNOT00000060098.5 UniProtKB/TrEMBL
  ENSRNOT00000101197.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1080 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
  3.30.1370.50 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  ph1033 like domains UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  DEAD-like_N UniProtKB/TrEMBL
  DNA/RNA_helicase_DEAD/DEAH_N UniProtKB/TrEMBL
  DUF1605 UniProtKB/TrEMBL
  HA2_WH UniProtKB/TrEMBL
  Helicase-assoc_dom UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  R3H_DEXH_helicase UniProtKB/TrEMBL
  R3H_dom_sf UniProtKB/TrEMBL
  R3H_ss-bd UniProtKB/TrEMBL
  YTH_domain UniProtKB/TrEMBL
NCBI Gene 307446 ENTREZGENE
PANTHER 3'-5' RNA HELICASE YTHDC2 UniProtKB/TrEMBL
  ATP-DEPENDENT RNA HELICASE UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  HA2 UniProtKB/TrEMBL
  HA2_C UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  OB_NTP_bind UniProtKB/TrEMBL
  R3H UniProtKB/TrEMBL
  YTH UniProtKB/TrEMBL
PhenoGen Ythdc2 PhenoGen
PROSITE ANK_REPEAT UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  R3H UniProtKB/TrEMBL
  YTH UniProtKB/TrEMBL
RatGTEx ENSRNOG00000039241 RatGTEx
  ENSRNOG00000059898 RatGTEx
SMART DEXDc UniProtKB/TrEMBL
  HA2 UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
  R3H UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF82708 UniProtKB/TrEMBL
UniProt A0A8I5ZKH1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZIV8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-03-09 Ythdc2  YTH N6-methyladenosine RNA binding protein C2  Ythdc2  YTH domain containing 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-03-09 Ythdc2  YTH domain containing 2  LOC100909599  probable ATP-dependent RNA helicase YTHDC2-like  Data merged from RGD:6502578 737654 PROVISIONAL
2013-05-24 Ythdc2  YTH domain containing 2  LOC100365272  YTH domain containing 2-like  Data merged from RGD:2319402 1643240 APPROVED
2012-07-05 LOC100909599  probable ATP-dependent RNA helicase YTHDC2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-05 LOC100365272  YTH domain containing 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-06 Ythdc2  YTH domain containing 2  RGD1563192_predicted  similar to YTH domain containing 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563192_predicted  similar to YTH domain containing 2 (predicted)  LOC307446  similar to YTH domain containing 2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC307446  similar to YTH domain containing 2      Symbol and Name status set to provisional 70820 PROVISIONAL