Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | nonprogressive cerebellar ataxia with mental retardation | | ISO | CAMTA1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | nonprogressive cerebellar ataxia with mental retardation | | ISO | CAMTA1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
3. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
5. | Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
Camta1 (Rattus norvegicus - Norway rat) |
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CAMTA1 (Homo sapiens - human) |
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Camta1 (Mus musculus - house mouse) |
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Camta1 (Chinchilla lanigera - long-tailed chinchilla) |
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CAMTA1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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CAMTA1 (Canis lupus familiaris - dog) |
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Camta1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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CAMTA1 (Sus scrofa - pig) |
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CAMTA1 (Chlorocebus sabaeus - green monkey) |
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Camta1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Camta1
5292 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 22 | 74 | 23 | ||||||||||
Low | 1 | 21 | 46 | 30 | 19 | 30 | 8 | 9 | 27 | 18 | 11 | 8 | |
Below cutoff | 2 | 7 | 7 | 7 | 2 | 8 |
RefSeq Transcripts | NM_001195559 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001195560 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039110436 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039110438 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039110444 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039110445 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063288086 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063288088 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063288089 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063288090 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063288091 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063288092 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_005504502 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010066426 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010066427 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010066428 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010066429 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010066430 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010066431 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010066432 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010066433 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010066434 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010066435 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010066436 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010066437 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010066438 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010066439 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010066440 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AAHX01040931 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AAHX01040932 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AAHX01040933 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AAHX01040934 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AAHX01040947 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AAHX01040954 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AAHX01040966 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AAHX01040974 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC106025 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BF290446 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BF290447 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ214478 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000005 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000066120 ⟹ ENSRNOP00000059056 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000067481 ⟹ ENSRNOP00000063320 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000092887 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000092964 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000093092 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001195559 ⟹ NP_001182488 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001195560 ⟹ NP_001182489 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039110436 ⟹ XP_038966364 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039110438 ⟹ XP_038966366 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039110444 ⟹ XP_038966372 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039110445 ⟹ XP_038966373 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063288086 ⟹ XP_063144156 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063288088 ⟹ XP_063144158 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063288089 ⟹ XP_063144159 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063288090 ⟹ XP_063144160 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063288091 ⟹ XP_063144161 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063288092 ⟹ XP_063144162 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_005504502 | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XR_010066426 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_010066427 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_010066428 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_010066429 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_010066430 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_010066431 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_010066432 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_010066433 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_010066434 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_010066435 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_010066436 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_010066437 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_010066438 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_010066439 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_010066440 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001182488 | (Get FASTA) | NCBI Sequence Viewer |
NP_001182489 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038966364 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038966366 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038966372 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038966373 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063144156 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063144158 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063144159 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063144160 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063144161 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063144162 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAI06026 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000059056.4 | ||
ENSRNOP00000063320.2 | |||
ENSRNOP00000083898 | |||
ENSRNOP00000083898.1 |
RefSeq Acc Id: | NP_001182488 ⟸ NM_001195559 |
- Peptide Label: | isoform 1 |
- UniProtKB: | A0A8I6G9L6 (UniProtKB/TrEMBL), A6IUF2 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001182489 ⟸ NM_001195560 |
- Peptide Label: | isoform 2 |
- UniProtKB: | Q3KQW8 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000063320 ⟸ ENSRNOT00000067481 |
RefSeq Acc Id: | ENSRNOP00000059056 ⟸ ENSRNOT00000066120 |
RefSeq Acc Id: | XP_038966364 ⟸ XM_039110436 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A6IUF2 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038966373 ⟸ XM_039110445 |
- Peptide Label: | isoform X5 |
- UniProtKB: | A6IUF2 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038966366 ⟸ XM_039110438 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A6IUF2 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038966372 ⟸ XM_039110444 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A6IUF2 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063144156 ⟸ XM_063288086 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_063144158 ⟸ XM_063288088 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | XP_063144160 ⟸ XM_063288090 |
- Peptide Label: | isoform X8 |
RefSeq Acc Id: | XP_063144159 ⟸ XM_063288089 |
- Peptide Label: | isoform X7 |
RefSeq Acc Id: | XP_063144162 ⟸ XM_063288092 |
- Peptide Label: | isoform X10 |
RefSeq Acc Id: | XP_063144161 ⟸ XM_063288091 |
- Peptide Label: | isoform X9 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-F1M4M6-F1-model_v2 | AlphaFold | F1M4M6 | 1-1609 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13694291 | ||||||||
Promoter ID: | EPDNEW_R4814 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Camta1_1 | ||||||||
Description: | calmodulin binding transcription activator 1 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1562703 | AgrOrtholog |
BioCyc Gene | G2FUF-39042 | BioCyc |
Ensembl Genes | ENSRNOG00000018602 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000066120.4 | UniProtKB/TrEMBL |
ENSRNOT00000067481.3 | UniProtKB/TrEMBL | |
ENSRNOT00000092887 | ENTREZGENE | |
ENSRNOT00000092887.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.20.5.190 | UniProtKB/TrEMBL |
1.25.40.20 | UniProtKB/TrEMBL | |
2.60.40.10 | UniProtKB/TrEMBL | |
InterPro | Ankyrin_rpt | UniProtKB/TrEMBL |
Ankyrin_rpt-contain_sf | UniProtKB/TrEMBL | |
CG-1_dom | UniProtKB/TrEMBL | |
Ig-like_fold | UniProtKB/TrEMBL | |
Ig_E-set | UniProtKB/TrEMBL | |
IPT | UniProtKB/TrEMBL | |
IQ_motif_EF-hand-BS | UniProtKB/TrEMBL | |
P-loop_NTPase | UniProtKB/TrEMBL | |
KEGG Report | rno:362665 | UniProtKB/TrEMBL |
NCBI Gene | 362665 | ENTREZGENE |
PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | UniProtKB/TrEMBL |
PTHR23335:SF11 | UniProtKB/TrEMBL | |
Pfam | Ank_2 | UniProtKB/TrEMBL |
CG-1 | UniProtKB/TrEMBL | |
TIG | UniProtKB/TrEMBL | |
PhenoGen | Camta1 | PhenoGen |
PROSITE | ANK_REP_REGION | UniProtKB/TrEMBL |
ANK_REPEAT | UniProtKB/TrEMBL | |
CG_1 | UniProtKB/TrEMBL | |
PS50096 | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000018602 | RatGTEx |
SMART | CG-1 | UniProtKB/TrEMBL |
Superfamily-SCOP | SSF48403 | UniProtKB/TrEMBL |
SSF52540 | UniProtKB/TrEMBL | |
SSF81296 | UniProtKB/TrEMBL | |
UniProt | A0A8I6G9L6 | ENTREZGENE, UniProtKB/TrEMBL |
A6IUF2 | ENTREZGENE, UniProtKB/TrEMBL | |
F1M4M6_RAT | UniProtKB/TrEMBL | |
F7ENC1_RAT | UniProtKB/TrEMBL | |
Q3KQW8 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2006-02-09 | LOC362665 | similar to KIAA0833 protein | Symbol and Name status set to provisional | 70820 | PROVISIONAL |