Tmem229b (transmembrane protein 229B)

Gene: Tmem229b (transmembrane protein 229B) Rattus norvegicus

Analyze

Symbol:

Tmem229b

Name:

transmembrane protein 229B

RGD ID:

1562622

Description:

Predicted to act upstream of or within macrophage activation and response to bacterium. Predicted to be located in membrane. Orthologous to human TMEM229B (transmembrane protein 229B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC503035; RGD1562622; similar to RIKEN cDNA 6330442E10 gene

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM229B (transmembrane protein 229B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tmem229b (transmembrane protein 229B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem229b (transmembrane protein 229B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM229B (transmembrane protein 229B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM229B (transmembrane protein 229B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem229b (transmembrane protein 229B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM229B (transmembrane protein 229B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM229B (transmembrane protein 229B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem229b (transmembrane protein 229B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TJP2 (tight junction protein 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TMEM229B (transmembrane protein 229B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tmem229b (transmembrane protein 229B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem229b (transmembrane protein 229B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tmem229b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	103,509,457 - 103,552,600 (-)	NCBI		GRCr8
mRatBN7.2	6	97,771,645 - 97,819,582 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	97,775,332 - 97,819,489 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	98,206,125 - 98,248,759 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	98,505,284 - 98,547,916 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	97,892,028 - 97,934,831 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	102,152,146 - 102,196,372 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	102,152,147 - 102,196,138 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	111,524,857 - 111,565,742 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	101,599,755 - 101,644,033 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	96,164,472 - 96,206,185 (-)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Leber congenital amaurosis 13 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

bisphenol A (EXP)

cadmium atom (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

D-glucose (ISO)

diquat (ISO)

doxorubicin (ISO)

endosulfan (EXP)

fucoxanthin (ISO)

gentamycin (EXP)

glucose (ISO)

inulin (ISO)

lead(0) (ISO)

methimazole (EXP)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

pentanal (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenethyl isothiocyanate (EXP)

propanal (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

testosterone (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triadimefon (EXP)

trichloroethene (EXP)

triclosan (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

macrophage activation (ISO)

response to bacterium (ISO)

Cellular Component

membrane (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:23012479

Genomics

Comparative Map Data

Tmem229b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	103,509,457 - 103,552,600 (-)	NCBI		GRCr8
mRatBN7.2	6	97,771,645 - 97,819,582 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	97,775,332 - 97,819,489 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	98,206,125 - 98,248,759 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	98,505,284 - 98,547,916 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	97,892,028 - 97,934,831 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	102,152,146 - 102,196,372 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	102,152,147 - 102,196,138 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	111,524,857 - 111,565,742 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	101,599,755 - 101,644,033 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	96,164,472 - 96,206,185 (-)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

TMEM229B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	67,470,269 - 67,533,850 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	67,447,084 - 67,533,739 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	67,936,986 - 68,000,567 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	67,006,736 - 67,051,774 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	14	47,996,017 - 48,041,084 (-)	NCBI		Celera
Cytogenetic Map	14	q24.1	NCBI
HuRef	14	48,106,827 - 48,151,820 (-)	NCBI		HuRef
CHM1_1	14	67,875,633 - 67,920,666 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	61,677,388 - 61,740,966 (-)	NCBI		T2T-CHM13v2.0

Tmem229b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	79,008,569 - 79,054,333 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	79,008,569 - 79,054,401 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	78,961,795 - 79,007,559 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	78,961,795 - 79,007,627 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	80,062,782 - 80,108,264 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	79,880,640 - 79,926,117 (-)	NCBI		MGSCv36	mm8
Celera	12	80,425,864 - 80,471,792 (-)	NCBI		Celera
Cytogenetic Map	12	C3	NCBI
cM Map	12	35.51	NCBI

Tmem229b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	2,715,192 - 2,733,431 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955466	2,672,966 - 2,733,431 (+)	NCBI	ChiLan1.0	ChiLan1.0

TMEM229B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	68,578,506 - 68,623,852 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	67,795,018 - 67,840,364 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	48,048,101 - 48,093,447 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	66,926,265 - 66,971,686 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	66,929,386 - 66,929,889 (-)	Ensembl	panpan1.1		panPan2

TMEM229B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	41,452,231 - 41,490,059 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	41,452,371 - 41,452,877 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	41,142,066 - 41,183,131 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	41,677,735 - 41,718,597 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	41,680,912 - 41,681,418 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	41,296,549 - 41,337,396 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	41,373,262 - 41,411,066 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	41,729,359 - 41,770,462 (-)	NCBI		UU_Cfam_GSD_1.0

Tmem229b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	63,291,260 - 63,333,085 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	10,861,586 - 10,873,876 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	10,858,641 - 10,900,379 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM229B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	7	91,181,474 - 91,190,162 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	97,491,470 - 97,533,307 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM229B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	44,719,179 - 44,764,187 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	44,719,837 - 44,720,337 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	32,949,806 - 32,994,166 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem229b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	33,483,425 - 33,527,899 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	33,483,415 - 33,527,899 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tmem229b
211 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	438
Count of miRNA genes:	229
Interacting mature miRNAs:	301
Transcripts:	ENSRNOT00000014132
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	10894415	110548006	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	15107216	107351382	Rat
634330	Pia16	Pristane induced arthritis QTL 16	3.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	6	45790088	104200226	Rat
6893332	Cm74	Cardiac mass QTL 74	0.4	0.64	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	57730540	104085867	Rat
1558641	Cm47	Cardiac mass QTL 47	2.9	0.001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	6	57730540	104085867	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	58632962	103632962	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	61747639	106747639	Rat
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
1641904	Alcrsp4	Alcohol response QTL 4			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	6	67262953	112262953	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	71201409	116201409	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	72202632	115200186	Rat
70196	BpQTLcluster7	Blood pressure QTL cluster 7	6.82		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	72202632	117202632	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	72202632	130729475	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	72202632	130919985	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	72227641	130729205	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	72227641	130729205	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	73463459	109394713	Rat
2293837	Kiddil1	Kidney dilation QTL 1	3.7		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	81132889	104393926	Rat
2293842	Kiddil3	Kidney dilation QTL 3	4.3		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	81132889	104393926	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	82523650	110548006	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	83190345	106747639	Rat
738034	Anxrr5	Anxiety related response QTL 5	5.9		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	6	84130881	129130881	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	85140138	130140138	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	85140138	130140138	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	85311061	133478515	Rat
1300076	Glom8	Glomerulus QTL 8	7	0.000000009	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	6	86894788	131894788	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	88047916	133047916	Rat
1331722	Thshl1	Thyroid stimulating hormone level QTL 1	11.7	0.0001	blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	6	89762877	106752806	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	93701310	128713626	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	94968928	137848904	Rat
12801411	Schws8	Schwannoma susceptibility QTL 8			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	94968928	139968928	Rat
8552796	Vie3	Viral induced encephalitis QTL 3	2.6		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	6	96833997	140994061	Rat

Markers in Region

D6Uwm1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	131,344,107 - 131,345,109 (+)	MAPPER	mRatBN7.2
mRatBN7.2	6	97,813,642 - 97,813,752 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	102,190,589 - 102,190,700	NCBI	Rnor6.0
Rnor_6.0	1	139,111,650 - 139,112,651	NCBI	Rnor6.0
Rnor_5.0	1	140,091,741 - 140,092,742	UniSTS	Rnor5.0
Rnor_5.0	6	111,560,193 - 111,560,304	UniSTS	Rnor5.0
RGSC_v3.4	6	101,638,484 - 101,638,595	UniSTS	RGSC3.4
RGSC_v3.4	1	133,136,243 - 133,137,244	UniSTS	RGSC3.4
RGSC_v3.1	6	101,641,939 - 101,642,051	RGD
Celera	6	96,200,636 - 96,200,747	UniSTS
Celera	1	123,427,990 - 123,428,991	UniSTS
Cytogenetic Map	6	q24	UniSTS

RH141503

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	97,776,592 - 97,776,773 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	102,152,306 - 102,152,486	NCBI	Rnor6.0
Rnor_5.0	6	111,525,017 - 111,525,197	UniSTS	Rnor5.0
RGSC_v3.4	6	101,599,914 - 101,600,094	UniSTS	RGSC3.4
Celera	6	96,164,631 - 96,164,811	UniSTS
RH 3.4 Map	6	690.49	UniSTS
Cytogenetic Map	6	q24	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3		8		19				64		12	11
Low		43	49	41		41	8	11	10	35	29		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000014132 ⟹ ENSRNOP00000014132

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	97,776,206 - 97,819,489 (-)	Ensembl
Rnor_6.0 Ensembl	6	102,152,147 - 102,196,138 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000096653 ⟹ ENSRNOP00000076560

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	97,776,206 - 97,819,278 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098038 ⟹ ENSRNOP00000086127

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	97,776,846 - 97,786,346 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119192 ⟹ ENSRNOP00000097942

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	97,775,332 - 97,792,552 (-)	Ensembl

RefSeq Acc Id:

NM_001109359 ⟹ NP_001102829

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	103,509,458 - 103,552,208 (-)	NCBI
mRatBN7.2	6	97,776,434 - 97,819,190 (-)	NCBI
Rnor_6.0	6	102,152,147 - 102,196,138 (-)	NCBI
Rnor_5.0	6	111,524,857 - 111,565,742 (-)	NCBI
RGSC_v3.4	6	101,599,755 - 101,644,033 (-)	RGD
Celera	6	96,164,472 - 96,206,185 (-)	RGD

Sequence:

show sequence

GGACACTCGATGCGGGAATAGTTGCGGGCGGGTGGCCGTGGGGGAGGCTTGTCCGGTCACTCGG
CGCGGGGGGAGCCCGAGCGCCGGGCGTGGGGGCCAGGGAGCAAGCGGCGCAGGAGAGCGCCCCG
AGTCCCGGCGCGGGAGGAGGAGCCGGAGCCAGCCGGTGAGACCGCGCTCCTGGCCGCACCTGCG
TTGGGCAGACGGCCGCCCGACCCTGCCTTGCCTTGCCCTACCCTCGTCCCCGGCCCCGCACCGA
CACATGAAAGCCATCCTTCTGCCAGCCAAGAATTAACTGAGCACTGGGGTGAATGCTTGTCTGC
ATAGCTAAGAATGGCGCCAAGGTCCAGTCTGATACCAAGACAAGGTTAAACAGGGACACAACTG
CACAGTGATCCTGATGTCTGTTCCCAGCCACGCAGTCAAGACTGTGACAACAGGAGGCCCCAGT
TGGTACCATGGCTTCTGCGGAGCCCCTGACAGCGCTGTCCCGCTGGTACCTATATGCCATCCAT
GGCTACTTCTGCGAGGTGATGTTCACAGCGGCCTGGGAGTTCGTGGTGAATTTTAACTGGAAGT
TCCCAGGGGTCACCAGCGTGTGGGCCCTCTTCATCTATGGCACCTCCATCCTGATCGTGGAGCG
CATGTACCTGCGCCTGCGAGGCCGCTGCCCTCTTCTGGTGCGCTGTGTCATCTATACTCTCTGG
ACCTACCTGTGGGAGTTCACTACCGGCTTTATCCTACGCCAGTTCAACGCCTGTCCCTGGGACT
ACTCCCAGTTCGACTTTGATTTCATGGGCCTCATTACCCTAGAGTATGCTGTGCCCTGGTTCTG
CGGGGCCCTCATCATGGAGCAGTTTATCATCCGCAACACCCTCCGCCTGCGCTTTGACAAGGAC
GCGGAGCCCGGGGAGCCGGCCAGCCCACCAGCCCTGGCCAATGGCCACGTCAAGACTGACTGAG
TCAGAAGATTAATGTGAGGACCTGAAGTCTCTTGTAGGAACCCATGAACAGAGAGAGAGAGAGA
GAGACCAAGCTGGTGGGGTTACCCCTTGGTTCAGCACAAGCCCCGCCCCCAACTGGGTCTTAGC
CCAGTAGGGCAAACATAACCACACATGGTGGGCAGTGGGATGGGTGTTGGGGAGTTGGGTGTCT
AGACAACAGAAATACTTTGAGACTCATCCATGCCTCTCAACACATCCTGGGGGCTGGAGGCTGG
GTGGCGAACAATTGGACTTTGATGGATGACTTTGGAAGCAGCAGACCTGTCCTAACTAAGGGAC
ATGAACTCCGGGGCTACAGGTGGGAGGCAAGGTCTGAGAAGGCCTTGGCTGCTGTTGGGGCCAC
CACCTCACCTGCCCCCTGGCTTCAGCTGGGCTTTGGCTGGTTCCATTAGGCAATATTCAGGTGC
TTGCTTGCAACCAATACCTCCCCGGGGGCCTCTGAGCTGCAGCCTGAGAGAGACCCAGTAGCCA
ATTGGGCTGCATGGTGGCACTGGTGTTGTGCAAAGGCCAGGAAAGCTTCCTTTGGCTCCTCTCC
CTCTCCCAGGGCCCCACGCTGCTCCCTTGGCCTTCTGGGGGCCCCTGTGGTGCTGGATTCCCAC
CAACCTTGGGCTTTTGGAGGTTTCAATCCCCGTGTGTTCGGTGGCGTTTCCCCTTATGTTCAAG
ACATTTACCACTAGCAGGCAGTCCTTTCCTGTGTCAGTCACCATAGCCTCCCCCTCTCCCAGCT
CCCTATAGAACACAGCAGTGGCCAGAGGCATAGCTCTGAAATGGACCCCCCCTGCCTTGCTGCA
GCCTTCCCTTCACCTTCCTCTGATGACTGGGGGCGCCCTGTCTTCCTGACCCAGGGATGATAGT
CTTGGTGTCCCTTCCCTGCAGAGGTCCTACTGAAAATGCATAATATCCCCCCACAATGTCCAGC
GAGGCCCAGAGGTGTGTGGTGGATCCACAGTGGGAAATAAAGGGTGGAGTTCTAGGTCCTATTT
ACCCAAACTGGTTTATTATTTCCACCAGCTAGCCAATATGGCTTCCTATGAGCTAGAGGAGATT
CAAAGATAACAAGACAGATACAGAAGACCACGGGAGGCTCTTTAGAGGCCCTTCCCTGGAAAAG
AGATGAGTTGTACCACAGCCTCAGCTCAGCAGTCAACCCTGAGGGCTGCTCTTCCTACAACTCC
AGGCCGGCCCCATAAGCTTGTTCTCAAACAGTGTTGTCTTAACTCTGTCACACTCATGGGCCTT
GTCAGCTTGGTTATTGTAACTTTACCCCATGATGGGTCCATTGCTGGCAGTGGACAGGTGAAAT
CCAGGCCCCTTCTCATTTTTGTCCCAAACTCTTTGAGAAGATGGGACCATCAGAGAGTGTAGCA
TACCATGAGGCCACCCTGGGACTCTCAGAGGTTGAAATCAACCCTTATTTCTTATAGATCATTT
TTAAATGACCGTAACACCTGTGGACCATGCAGACAGCACCAGGCCAGGGCCAGCAGCAGGGCTG
TCCTAGGCTGGGGGAAAGACTTGGAGACATAACCTTCTGTGGTATCCTTTCCCTGTGTTTTCTC
TGTCTGGGGTAAGATGCTAAGTGTTTCCCTTGGTAGGCTTCTCAAATCACCAGATACTATTCTG
TCGTAGGGAAACTTGCTATGGCCCTAAGACTTGGGGGTTATGGGAGTGGTCGCTTTCCATATAC
AAGTGGAGAAGGTTCCGTATTTTCTCCAATTCCATATTATCTTAATTACCTGAATCCTAACACC
TCTCCAGGCCACCTCACACCTGATCACAACTGATCTATTGGCTGGCTGAGGTGTCCCAGCATTA
AAACTCCAATTCTCAACCAGAAAACGCCACTGGGTGGCCCCTGGGTCTCAGCGCTCCAGATGTT
GTCTTCAGGCATCCCCTAGTACCATTTTTTCTCAAAGCGCTATTAATCCCATGTCAGGAGAGGT
TCCCAGAGCAGATCTGCTGGCCTGGAAATACTCAGCATTGTGGTCTGCTTCCCTAGGTCCCTGT
TGCTCCTAGGGCCCCTCATAGGCACAGAACCCCCAGCCAGAGGAGACTCTACCTTAAGGCCTGA
CCACAGACCTGCAGGGTAGTCTAGACTTCAGCTCTTGCTCATTGGCTCTCTTCAGGAATCCAAC
CCCTTAGTGCTTAGGGGCTTGAAGGTGGGGGTAATTAAACCCTTCTGAGCAGTGGGGAGTCTGC
TGGCTGTCTATGGAGCCTCCCTCTGATGTTCTGAGCCCGAGGTAGGAGTTTCAGATAGTAAGTA
TGCTGCCCTGCATGGTTGAGTTGCTTTGGATGTCTGCTAGGCTTCCAGTGCCCTGCCCCCTCCT
CATGCCAGAGAGTCACAATGGCCTGTGCTTAATCACAGCAATAATATATAGGGAGCATCTGTGA
GTCCCCTTTGTCCTGGTCCATCACTCTTCATGGATCTCCCAGGAGACTACTGAGTGGGTCAGTT
CATGTGAGAATCAATTTATGAAGCTCTGGGCTGTGCAAAGTGTTGTCACAGGAGGCAGGTGAGA
GGCCCAGCTCTGAACTGTGAGTAAGGCAGTGGGAGTGCCTTCCACCCTGAAGCCACCCTTACCT
GGAGGAGTTTAGGCCCTGGCTTTGTAACAGGGCCTATGAATTGGTTAGGACTGTCTTCCAGCTG
GACAGCTCTTGAGAAAGGCACGTGACTAATTTGTGAGCCCATTGCCTGCTATGTCTCCGTTAGT
CTGTCTCTCCCTTTTCATAACTGTGCACATAAAATATACTGGTGTTTGTGTTCCTGG

hide sequence

RefSeq Acc Id:

XM_017594313 ⟹ XP_017449802

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	103,509,457 - 103,552,097 (-)	NCBI
mRatBN7.2	6	97,776,433 - 97,819,070 (-)	NCBI
Rnor_6.0	6	102,152,146 - 102,196,220 (-)	NCBI

Sequence:

show sequence

GCCGCCGCCGCCGCCTGGGGCTGGGTTCCGTGGGGCAGCAGCGGCTGCAGCTCCCCGGGCCCCG
CGCCGCCCAGGCGGCCGCGGACACTCGATGCGGGAATAGTTGCGGGCGGGTGGCGTGGGGGAGG
CTTGTCCGGTCACTCGGCGCGGGGGGAGCCCGAGCGCCGGGCGTGGGGGCAGGGAGCAGGCGGC
GCAGGAGAGCGCCCCGAGTCCCGGCGCGGGAGGAGGAGCCGGAGCCAGCCGGTGAGACCGCGCT
CCTGGCCGCACCTGCGTTGGGCAGACGGCCGCCCGACCCTGCCTTGCCTTGCCCTACCCTCGTC
CCCGGCCCCGCACCGAGACACATGAAAGCCATCCTTCTGCCAGCCAAGAATTAACTGAGCACTG
GGGTGAATGCTTGTCTGCATAGCTAAGAATGGCGCCAAGGTCCAGTCTGATACCAAGACAAGGT
TAAACAGGGACACAACTGCACAGTGATCCTGATGTCTGTTCCCAGCCACGCAGTCAAGACTGTG
ACAACAGGAGGCCCCAGTTGGTACCATGGCTTCTGCGGAGCCCCTGACAGCGCTGTCCCGCTGG
TACCTATATGCCATCCATGGCTACTTCTGCGAGGTGATGTTCACAGCGGCCTGGGAGTTCGTGG
TGAATTTTAACTGGAAGTTCCCAGGGGTCACCAGCGTGTGGGCCCTCTTCATCTATGGCACCTC
CATCCTGATCGTGGAGCGCATGTACCTGCGCCTGCGAGGCCGCTGCCCTCTTCTGGTGCGCTGT
GTCATCTATACTCTCTGGACCTACCTGTGGGAGTTCACTACCGGCTTTATCCTACGCCAGTTCA
ACGCCTGTCCCTGGGACTACTCCCAGTTCGACTTTGATTTCATGGGCCTCATTACCCTAGAGTA
TGCTGTGCCCTGGTTCTGCGGGGCCCTCATCATGGAGCAGTTTATCATCCGCAACACCCTCCGC
CTGCGCTTTGACAAGGACGCGGAGCCCGGGGAGCCGGCCAGCCCACCAGCCCTGGCCAATGGCC
ACGTCAAGACTGACTGAGTCAGAAGATTAATGTGAGGACCTGAAGTCTCTTGTAGGAACCCATG
AACAGAGAGAGAGAGAGAGAGACCAAGCTGGTGGGGTTACCCCTTGGTTCAGCACAAGCCCCGC
CCCCAACTGGGTCTTAGCCCAGTAGGGCAAACATAACCACACATGGTGGGCAGTGGGATGGGTG
TTGGGGAGTTGGGTGTCTAGACAACAGAAATACTTTGAGACTCATCCATGCCTCTCAACACATC
CTGGGGGCTGGAGGCTGGGTGGCGAACAATTGGACTTTGATGGATGACTTTGGAAGCAGCAGAC
CTGTCCTAACTAAGGGACATGAACTCCGGGGCTACAGGTGGGAGGCAAGGTCTGAGAAGGCCTT
GGCTGCTGTTGGGGCCACCACCTCACCTGCCCCCTGGCTTCAGCTGGGCTTTGGCTGGTTCCAT
TAGGCAATATTCAGGTGCTTGCTTGCAACCAATACCTCCCCGGGGGCCTCTGAGCTGCAGCCTG
AGAGAGACCCAGTAGCCAATTGGGCTGCATGGTGGCACTGGTGTTGTGCAAAGGCCAGGAAAGC
TTCCTTTGGCTCCTCTCCCTCTCCCAGGGCCCCACGCTGCTCCCTTGGCCTTCTGGGGGCCCCT
GTGGTGCTGGATTCCCACCAACCTTGGGCTTTTGGAGGTTTCAATCCCCGTGTGTTCGGTGGCG
TTTCCCCTTATGTTCAAGACATTTACCACTAGCAGGCAGTCCTTTCCTGTGTCAGTCACCATAG
CCTCCCCCTCTCCCAGCTCCCTATAGAACACAGCAGTGGCCAGAGGCATAGCTCTGAAATGGAC
CCCCCCTGCCTTGCTGCAGCCTTCCCTTCACCTTCCTCTGATGACTGGGGGCGCCCTGTCTTCC
TGACCCAGGGATGATAGTCTTGGTGTCCCTTCCCTGCAGAGGTCCTACTGAAAATGCATAATAT
CCCCCCACAATGTCCAGCGAGGCCCAGAGGTGTGTGGTGGATCCACAGTGGGAAATAAAGGGTG
GAGTTCTAGGTCCTATTTACCCAAACTGGTTTATTATTTCCACCAGCTAGCCAATATGGCTTCC
TATGAGCTAGAGGAGATTCAAAGATAACAAGACAGATACAGAAGACCACGGGAGGCTCTTTAGA
GGCCCTTCCCTGGAAAAGAGATGAGTTGTACCACAGCCTCAGCTCAGCAGTCAACCCTGAGGGC
TGCTCTTCCTACAACTCCAGGCCGGCCCCATAAGCTTGTTCTCAAACAGTGTTGTCTTAACTCT
GTCACACTCATGGGCCTTGTCAGCTTGGTTATTGTAACTTTACCCCATGATGGGTCCATTGCTG
GCAGTGGACAGGTGAAATCCAGGCCCCTTCTCATTTTTGTCCCAAACTCTTTGAGAAGATGGGA
CCATCAGAGAGTGTAGCATACCATGAGGCCACCCTGGGACTCTCAGAGGTTGAAATCAACCCTT
ATTTCTTATAGATCATTTTTAAATGACCGTAACACCTGTGGACCATGCAGACAGCACCAGGCCA
GGGCCAGCAGCAGGGCTGTCCTAGGCTGGGGGAAAGACTTGGAGACATAACCTTCTGTGGTATC
CTTTCCCTGTGTTTTCTCTGTCTGGGGTAAGATGCTAAGTGTTTCCCTTGGTAGGCTTCTCAAA
TCACCAGATACTATTCTGTCGTAGGGAAACTTGCTATGGCCCTAAGACTTGGGGGTTATGGGAG
TGGTCGCTTTCCATATACAAGTGGAGAAGGTTCCGTATTTTCTCCAATTCCATATTATCTTAAT
TACCTGAATCCTAACACCTCTCCAGGCCACCTCACACCTGATCACAACTGATCTATTGGCTGGC
TGAGGTGTCCCAGCATTAAAACTCCAATTCTCAACCAGAAAACGCCACTGGGTGGCCCCTGGGT
CTCAGCGCTCCAGATGTTGTCTTCAGGCATCCCCTAGTACCATTTTTTCTCAAAGCGCTATTAA
TCCCATGTCAGGAGAGGTTCCCAGAGCAGATCTGCTGGCCTGGAAATACTCAGCATTGTGGTCT
GCTTCCCTAGGTCCCTGTTGCTCCTAGGGCCCCTCATAGGCACAGAACCCCCAGCCAGAGGAGA
CTCTACCTTAAGGCCTGACCACAGACCTGCAGGGTAGTCTAGACTTCAGCTCTTGCTCATTGGC
TCTCTTCAGGAATCCAACCCCTTAGTGCTTAGGGGCTTGAAGGTGGGGGTAATTAAACCCTTCT
GAGCAGTGGGGAGTCTGCTGGCTGTCTATGGAGCCTCCCTCTGATGTTCTGAGCCCGAGGTAGG
AGTTTCAGATAGTAAGTATGCTGCCCTGCATGGTTGAGTTGCTTTGGATGTCTGCTAGGCTTCC
AGTGCCCTGCCCCCTCCTCATGCCAGAGAGTCACAATGGCCTGTGCTTAATCACAGCAATAATA
TATAGGGAGCATCTGTGAGTCCCCTTTGTCCTGGTCCATCACTCTTCATGGATCTCCCAGGAGA
CTACTGAGTGGGTCAGTTCATGTGAGAATCAATTTATGAAGCTCTGGGCTGTGCAAAGTGTTGT
CACAGGAGGCAGGTGAGAGGCCCAGCTCTGAACTGTGAGTAAGGCAGTGGGAGTGCCTTCCACC
CTGAAGCCACCCTTACCTGGAGGAGTTTAGGCCCTGGCTTTGTAACAGGGCCTATGAATTGGTT
AGGACTGTCTTCCAGCTGGACAGCTCTTGAGAAAGGCACGTGACTAATTTGTGAGCCCATTGCC
TGCTATGTCTCCGTTAGTCTGTCTCTCCCTTTTCATAACTGTGCACATAAAATATACTGGTGTT
TGTGTTCCTGGA

hide sequence

RefSeq Acc Id:

XM_017594315 ⟹ XP_017449804

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	103,509,457 - 103,529,906 (-)	NCBI
mRatBN7.2	6	97,776,433 - 97,792,942 (-)	NCBI
Rnor_6.0	6	102,152,146 - 102,168,577 (-)	NCBI

Sequence:

show sequence

TAGTTCTGGGATTAAAGGTGTGGATCCTGCTCTTGAAGGCTAGAATGTAAGAAAGATCTGGGGA
CAGCTTGTGCACTTGCAGGGAAAGGTGGGACCCCCACCCCACCCCCCTCCAGACTCCACCCTGG
TGACCGACCATTGCATCTCATCCACCCCTGAGAAGAGGCTGGCAAGCAGACAAGAAGCAGGAAG
TGTCCAGCTGGTTCCCAGAGAGCCGTTTTGACCACCCCAGAGTGGTGTCCTTGCCTAGCATAGG
ATCTCAGCCTGTAGCAGATGGCCATCGGGTGCTGTAGCACCAGGCTGAACAAGCAGGATGTGGT
TTTTGGTTTCTGTTTCTGTTTTGACTTGTGCTGTTGCTGTGGCTTGCCTAGGCCCCAGGAAAAA
GGAAGTGCCCATGGGTGGGATTGAACTTTCCAAACCATATGTCATGGCGGTGCAAATGGTGGAG
GGTATGGAACATGCTTCATTAAGACTCTTTCATCAAGGCGATAGAGACACATGAAAGCCATCCT
TCTGCCAGCCAAGAATTAACTGAGCACTGGGGTGAATGCTTGTCTGCATAGCTAAGAATGGCGC
CAAGGTCCAGTCTGATACCAAGACAAGGTTAAACAGGGACACAACTGCACAGTGATCCTGATGT
CTGTTCCCAGCCACGCAGTCAAGACTGTGACAACAGGAGGCCCCAGTTGGTACCATGGCTTCTG
CGGAGCCCCTGACAGCGCTGTCCCGCTGGTACCTATATGCCATCCATGGCTACTTCTGCGAGGT
GATGTTCACAGCGGCCTGGGAGTTCGTGGTGAATTTTAACTGGAAGTTCCCAGGGGTCACCAGC
GTGTGGGCCCTCTTCATCTATGGCACCTCCATCCTGATCGTGGAGCGCATGTACCTGCGCCTGC
GAGGCCGCTGCCCTCTTCTGGTGCGCTGTGTCATCTATACTCTCTGGACCTACCTGTGGGAGTT
CACTACCGGCTTTATCCTACGCCAGTTCAACGCCTGTCCCTGGGACTACTCCCAGTTCGACTTT
GATTTCATGGGCCTCATTACCCTAGAGTATGCTGTGCCCTGGTTCTGCGGGGCCCTCATCATGG
AGCAGTTTATCATCCGCAACACCCTCCGCCTGCGCTTTGACAAGGACGCGGAGCCCGGGGAGCC
GGCCAGCCCACCAGCCCTGGCCAATGGCCACGTCAAGACTGACTGAGTCAGAAGATTAATGTGA
GGACCTGAAGTCTCTTGTAGGAACCCATGAACAGAGAGAGAGAGAGAGAGACCAAGCTGGTGGG
GTTACCCCTTGGTTCAGCACAAGCCCCGCCCCCAACTGGGTCTTAGCCCAGTAGGGCAAACATA
ACCACACATGGTGGGCAGTGGGATGGGTGTTGGGGAGTTGGGTGTCTAGACAACAGAAATACTT
TGAGACTCATCCATGCCTCTCAACACATCCTGGGGGCTGGAGGCTGGGTGGCGAACAATTGGAC
TTTGATGGATGACTTTGGAAGCAGCAGACCTGTCCTAACTAAGGGACATGAACTCCGGGGCTAC
AGGTGGGAGGCAAGGTCTGAGAAGGCCTTGGCTGCTGTTGGGGCCACCACCTCACCTGCCCCCT
GGCTTCAGCTGGGCTTTGGCTGGTTCCATTAGGCAATATTCAGGTGCTTGCTTGCAACCAATAC
CTCCCCGGGGGCCTCTGAGCTGCAGCCTGAGAGAGACCCAGTAGCCAATTGGGCTGCATGGTGG
CACTGGTGTTGTGCAAAGGCCAGGAAAGCTTCCTTTGGCTCCTCTCCCTCTCCCAGGGCCCCAC
GCTGCTCCCTTGGCCTTCTGGGGGCCCCTGTGGTGCTGGATTCCCACCAACCTTGGGCTTTTGG
AGGTTTCAATCCCCGTGTGTTCGGTGGCGTTTCCCCTTATGTTCAAGACATTTACCACTAGCAG
GCAGTCCTTTCCTGTGTCAGTCACCATAGCCTCCCCCTCTCCCAGCTCCCTATAGAACACAGCA
GTGGCCAGAGGCATAGCTCTGAAATGGACCCCCCCTGCCTTGCTGCAGCCTTCCCTTCACCTTC
CTCTGATGACTGGGGGCGCCCTGTCTTCCTGACCCAGGGATGATAGTCTTGGTGTCCCTTCCCT
GCAGAGGTCCTACTGAAAATGCATAATATCCCCCCACAATGTCCAGCGAGGCCCAGAGGTGTGT
GGTGGATCCACAGTGGGAAATAAAGGGTGGAGTTCTAGGTCCTATTTACCCAAACTGGTTTATT
ATTTCCACCAGCTAGCCAATATGGCTTCCTATGAGCTAGAGGAGATTCAAAGATAACAAGACAG
ATACAGAAGACCACGGGAGGCTCTTTAGAGGCCCTTCCCTGGAAAAGAGATGAGTTGTACCACA
GCCTCAGCTCAGCAGTCAACCCTGAGGGCTGCTCTTCCTACAACTCCAGGCCGGCCCCATAAGC
TTGTTCTCAAACAGTGTTGTCTTAACTCTGTCACACTCATGGGCCTTGTCAGCTTGGTTATTGT
AACTTTACCCCATGATGGGTCCATTGCTGGCAGTGGACAGGTGAAATCCAGGCCCCTTCTCATT
TTTGTCCCAAACTCTTTGAGAAGATGGGACCATCAGAGAGTGTAGCATACCATGAGGCCACCCT
GGGACTCTCAGAGGTTGAAATCAACCCTTATTTCTTATAGATCATTTTTAAATGACCGTAACAC
CTGTGGACCATGCAGACAGCACCAGGCCAGGGCCAGCAGCAGGGCTGTCCTAGGCTGGGGGAAA
GACTTGGAGACATAACCTTCTGTGGTATCCTTTCCCTGTGTTTTCTCTGTCTGGGGTAAGATGC
TAAGTGTTTCCCTTGGTAGGCTTCTCAAATCACCAGATACTATTCTGTCGTAGGGAAACTTGCT
ATGGCCCTAAGACTTGGGGGTTATGGGAGTGGTCGCTTTCCATATACAAGTGGAGAAGGTTCCG
TATTTTCTCCAATTCCATATTATCTTAATTACCTGAATCCTAACACCTCTCCAGGCCACCTCAC
ACCTGATCACAACTGATCTATTGGCTGGCTGAGGTGTCCCAGCATTAAAACTCCAATTCTCAAC
CAGAAAACGCCACTGGGTGGCCCCTGGGTCTCAGCGCTCCAGATGTTGTCTTCAGGCATCCCCT
AGTACCATTTTTTCTCAAAGCGCTATTAATCCCATGTCAGGAGAGGTTCCCAGAGCAGATCTGC
TGGCCTGGAAATACTCAGCATTGTGGTCTGCTTCCCTAGGTCCCTGTTGCTCCTAGGGCCCCTC
ATAGGCACAGAACCCCCAGCCAGAGGAGACTCTACCTTAAGGCCTGACCACAGACCTGCAGGGT
AGTCTAGACTTCAGCTCTTGCTCATTGGCTCTCTTCAGGAATCCAACCCCTTAGTGCTTAGGGG
CTTGAAGGTGGGGGTAATTAAACCCTTCTGAGCAGTGGGGAGTCTGCTGGCTGTCTATGGAGCC
TCCCTCTGATGTTCTGAGCCCGAGGTAGGAGTTTCAGATAGTAAGTATGCTGCCCTGCATGGTT
GAGTTGCTTTGGATGTCTGCTAGGCTTCCAGTGCCCTGCCCCCTCCTCATGCCAGAGAGTCACA
ATGGCCTGTGCTTAATCACAGCAATAATATATAGGGAGCATCTGTGAGTCCCCTTTGTCCTGGT
CCATCACTCTTCATGGATCTCCCAGGAGACTACTGAGTGGGTCAGTTCATGTGAGAATCAATTT
ATGAAGCTCTGGGCTGTGCAAAGTGTTGTCACAGGAGGCAGGTGAGAGGCCCAGCTCTGAACTG
TGAGTAAGGCAGTGGGAGTGCCTTCCACCCTGAAGCCACCCTTACCTGGAGGAGTTTAGGCCCT
GGCTTTGTAACAGGGCCTATGAATTGGTTAGGACTGTCTTCCAGCTGGACAGCTCTTGAGAAAG
GCACGTGACTAATTTGTGAGCCCATTGCCTGCTATGTCTCCGTTAGTCTGTCTCTCCCTTTTCA
TAACTGTGCACATAAAATATACTGGTGTTTGTGTTCCTGGA

hide sequence

RefSeq Acc Id:

XM_017594316 ⟹ XP_017449805

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	103,509,457 - 103,552,600 (-)	NCBI
mRatBN7.2	6	97,776,433 - 97,819,582 (-)	NCBI
Rnor_6.0	6	102,152,146 - 102,196,372 (-)	NCBI

Sequence:

show sequence

GCTGAGGATGAGTGGCGGGAGTCCTCTGGGTTGGCGGGGGCAGCCGGCCCAGCGGACACGCGGG
CGCTGAAGGAGTTAAACAGGGCCGGGGGCAGAGCGCCTGTCAGAAGCGAGCATGTGCAGTTTGC
ACCGCATCCGTACTATGGAGACACATGAAAGCCATCCTTCTGCCAGCCAAGAATTAACTGAGCA
CTGGGGTGAATGCTTGTCTGCATAGCTAAGAATGGCGCCAAGGTCCAGTCTGATACCAAGACAA
GGTTAAACAGGGACACAACTGCACAGTGATCCTGATGTCTGTTCCCAGCCACGCAGTCAAGACT
GTGACAACAGGAGGCCCCAGTTGGTACCATGGCTTCTGCGGAGCCCCTGACAGCGCTGTCCCGC
TGGTACCTATATGCCATCCATGGCTACTTCTGCGAGGTGATGTTCACAGCGGCCTGGGAGTTCG
TGGTGAATTTTAACTGGAAGTTCCCAGGGGTCACCAGCGTGTGGGCCCTCTTCATCTATGGCAC
CTCCATCCTGATCGTGGAGCGCATGTACCTGCGCCTGCGAGGCCGCTGCCCTCTTCTGGTGCGC
TGTGTCATCTATACTCTCTGGACCTACCTGTGGGAGTTCACTACCGGCTTTATCCTACGCCAGT
TCAACGCCTGTCCCTGGGACTACTCCCAGTTCGACTTTGATTTCATGGGCCTCATTACCCTAGA
GTATGCTGTGCCCTGGTTCTGCGGGGCCCTCATCATGGAGCAGTTTATCATCCGCAACACCCTC
CGCCTGCGCTTTGACAAGGACGCGGAGCCCGGGGAGCCGGCCAGCCCACCAGCCCTGGCCAATG
GCCACGTCAAGACTGACTGAGTCAGAAGATTAATGTGAGGACCTGAAGTCTCTTGTAGGAACCC
ATGAACAGAGAGAGAGAGAGAGAGACCAAGCTGGTGGGGTTACCCCTTGGTTCAGCACAAGCCC
CGCCCCCAACTGGGTCTTAGCCCAGTAGGGCAAACATAACCACACATGGTGGGCAGTGGGATGG
GTGTTGGGGAGTTGGGTGTCTAGACAACAGAAATACTTTGAGACTCATCCATGCCTCTCAACAC
ATCCTGGGGGCTGGAGGCTGGGTGGCGAACAATTGGACTTTGATGGATGACTTTGGAAGCAGCA
GACCTGTCCTAACTAAGGGACATGAACTCCGGGGCTACAGGTGGGAGGCAAGGTCTGAGAAGGC
CTTGGCTGCTGTTGGGGCCACCACCTCACCTGCCCCCTGGCTTCAGCTGGGCTTTGGCTGGTTC
CATTAGGCAATATTCAGGTGCTTGCTTGCAACCAATACCTCCCCGGGGGCCTCTGAGCTGCAGC
CTGAGAGAGACCCAGTAGCCAATTGGGCTGCATGGTGGCACTGGTGTTGTGCAAAGGCCAGGAA
AGCTTCCTTTGGCTCCTCTCCCTCTCCCAGGGCCCCACGCTGCTCCCTTGGCCTTCTGGGGGCC
CCTGTGGTGCTGGATTCCCACCAACCTTGGGCTTTTGGAGGTTTCAATCCCCGTGTGTTCGGTG
GCGTTTCCCCTTATGTTCAAGACATTTACCACTAGCAGGCAGTCCTTTCCTGTGTCAGTCACCA
TAGCCTCCCCCTCTCCCAGCTCCCTATAGAACACAGCAGTGGCCAGAGGCATAGCTCTGAAATG
GACCCCCCCTGCCTTGCTGCAGCCTTCCCTTCACCTTCCTCTGATGACTGGGGGCGCCCTGTCT
TCCTGACCCAGGGATGATAGTCTTGGTGTCCCTTCCCTGCAGAGGTCCTACTGAAAATGCATAA
TATCCCCCCACAATGTCCAGCGAGGCCCAGAGGTGTGTGGTGGATCCACAGTGGGAAATAAAGG
GTGGAGTTCTAGGTCCTATTTACCCAAACTGGTTTATTATTTCCACCAGCTAGCCAATATGGCT
TCCTATGAGCTAGAGGAGATTCAAAGATAACAAGACAGATACAGAAGACCACGGGAGGCTCTTT
AGAGGCCCTTCCCTGGAAAAGAGATGAGTTGTACCACAGCCTCAGCTCAGCAGTCAACCCTGAG
GGCTGCTCTTCCTACAACTCCAGGCCGGCCCCATAAGCTTGTTCTCAAACAGTGTTGTCTTAAC
TCTGTCACACTCATGGGCCTTGTCAGCTTGGTTATTGTAACTTTACCCCATGATGGGTCCATTG
CTGGCAGTGGACAGGTGAAATCCAGGCCCCTTCTCATTTTTGTCCCAAACTCTTTGAGAAGATG
GGACCATCAGAGAGTGTAGCATACCATGAGGCCACCCTGGGACTCTCAGAGGTTGAAATCAACC
CTTATTTCTTATAGATCATTTTTAAATGACCGTAACACCTGTGGACCATGCAGACAGCACCAGG
CCAGGGCCAGCAGCAGGGCTGTCCTAGGCTGGGGGAAAGACTTGGAGACATAACCTTCTGTGGT
ATCCTTTCCCTGTGTTTTCTCTGTCTGGGGTAAGATGCTAAGTGTTTCCCTTGGTAGGCTTCTC
AAATCACCAGATACTATTCTGTCGTAGGGAAACTTGCTATGGCCCTAAGACTTGGGGGTTATGG
GAGTGGTCGCTTTCCATATACAAGTGGAGAAGGTTCCGTATTTTCTCCAATTCCATATTATCTT
AATTACCTGAATCCTAACACCTCTCCAGGCCACCTCACACCTGATCACAACTGATCTATTGGCT
GGCTGAGGTGTCCCAGCATTAAAACTCCAATTCTCAACCAGAAAACGCCACTGGGTGGCCCCTG
GGTCTCAGCGCTCCAGATGTTGTCTTCAGGCATCCCCTAGTACCATTTTTTCTCAAAGCGCTAT
TAATCCCATGTCAGGAGAGGTTCCCAGAGCAGATCTGCTGGCCTGGAAATACTCAGCATTGTGG
TCTGCTTCCCTAGGTCCCTGTTGCTCCTAGGGCCCCTCATAGGCACAGAACCCCCAGCCAGAGG
AGACTCTACCTTAAGGCCTGACCACAGACCTGCAGGGTAGTCTAGACTTCAGCTCTTGCTCATT
GGCTCTCTTCAGGAATCCAACCCCTTAGTGCTTAGGGGCTTGAAGGTGGGGGTAATTAAACCCT
TCTGAGCAGTGGGGAGTCTGCTGGCTGTCTATGGAGCCTCCCTCTGATGTTCTGAGCCCGAGGT
AGGAGTTTCAGATAGTAAGTATGCTGCCCTGCATGGTTGAGTTGCTTTGGATGTCTGCTAGGCT
TCCAGTGCCCTGCCCCCTCCTCATGCCAGAGAGTCACAATGGCCTGTGCTTAATCACAGCAATA
ATATATAGGGAGCATCTGTGAGTCCCCTTTGTCCTGGTCCATCACTCTTCATGGATCTCCCAGG
AGACTACTGAGTGGGTCAGTTCATGTGAGAATCAATTTATGAAGCTCTGGGCTGTGCAAAGTGT
TGTCACAGGAGGCAGGTGAGAGGCCCAGCTCTGAACTGTGAGTAAGGCAGTGGGAGTGCCTTCC
ACCCTGAAGCCACCCTTACCTGGAGGAGTTTAGGCCCTGGCTTTGTAACAGGGCCTATGAATTG
GTTAGGACTGTCTTCCAGCTGGACAGCTCTTGAGAAAGGCACGTGACTAATTTGTGAGCCCATT
GCCTGCTATGTCTCCGTTAGTCTGTCTCTCCCTTTTCATAACTGTGCACATAAAATATACTGGT
GTTTGTGTTCCTGGA

hide sequence

RefSeq Acc Id:

XM_017594319 ⟹ XP_017449808

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	103,509,457 - 103,552,184 (-)	NCBI
mRatBN7.2	6	97,776,433 - 97,819,161 (-)	NCBI
Rnor_6.0	6	102,152,146 - 102,196,220 (-)	NCBI

Sequence:

show sequence

GCCGCCGCCGCCGCCTGGGGCTGGGTTCCGTGGGGCAGCAGCGGCTGCAGCTCCCCGGGCCCCG
CGCCGCCCAGGCGGCCGCGGACACTCGATGCGGGAATAGTTGCGGGCGGGTGGCGTGGGGGAGG
CTTGTCCGGTCACTCGGCGCGGGGGGAGCCCGAGCGCCGGGCGTGGGGGCAGGGAGCAGGCGGC
GCAGGAGAGCGCCCCGAGTCCCGGCGCGGGAGGAGGAGCCGGAGCCAGCCGAGACACATGAAAG
CCATCCTTCTGCCAGCCAAGAATTAACTGAGCACTGGGGTGAATGCTTGTCTGCATAGCTAAGA
ATGGCGCCAAGGTCCAGTCTGATACCAAGACAAGGTTAAACAGGGACACAACTGCACAGTGATC
CTGATGTCTGTTCCCAGCCACGCAGTCAAGACTGTGACAACAGGAGGCCCCAGTTGGTACCATG
GCTTCTGCGGAGCCCCTGACAGCGCTGTCCCGCTGGTACCTATATGCCATCCATGGCTACTTCT
GCGAGGTGATGTTCACAGCGGCCTGGGAGTTCGTGGTGAATTTTAACTGGAAGTTCCCAGGGGT
CACCAGCGTGTGGGCCCTCTTCATCTATGGCACCTCCATCCTGATCGTGGAGCGCATGTACCTG
CGCCTGCGAGGCCGCTGCCCTCTTCTGGTGCGCTGTGTCATCTATACTCTCTGGACCTACCTGT
GGGAGTTCACTACCGGCTTTATCCTACGCCAGTTCAACGCCTGTCCCTGGGACTACTCCCAGTT
CGACTTTGATTTCATGGGCCTCATTACCCTAGAGTATGCTGTGCCCTGGTTCTGCGGGGCCCTC
ATCATGGAGCAGTTTATCATCCGCAACACCCTCCGCCTGCGCTTTGACAAGGACGCGGAGCCCG
GGGAGCCGGCCAGCCCACCAGCCCTGGCCAATGGCCACGTCAAGACTGACTGAGTCAGAAGATT
AATGTGAGGACCTGAAGTCTCTTGTAGGAACCCATGAACAGAGAGAGAGAGAGAGAGACCAAGC
TGGTGGGGTTACCCCTTGGTTCAGCACAAGCCCCGCCCCCAACTGGGTCTTAGCCCAGTAGGGC
AAACATAACCACACATGGTGGGCAGTGGGATGGGTGTTGGGGAGTTGGGTGTCTAGACAACAGA
AATACTTTGAGACTCATCCATGCCTCTCAACACATCCTGGGGGCTGGAGGCTGGGTGGCGAACA
ATTGGACTTTGATGGATGACTTTGGAAGCAGCAGACCTGTCCTAACTAAGGGACATGAACTCCG
GGGCTACAGGTGGGAGGCAAGGTCTGAGAAGGCCTTGGCTGCTGTTGGGGCCACCACCTCACCT
GCCCCCTGGCTTCAGCTGGGCTTTGGCTGGTTCCATTAGGCAATATTCAGGTGCTTGCTTGCAA
CCAATACCTCCCCGGGGGCCTCTGAGCTGCAGCCTGAGAGAGACCCAGTAGCCAATTGGGCTGC
ATGGTGGCACTGGTGTTGTGCAAAGGCCAGGAAAGCTTCCTTTGGCTCCTCTCCCTCTCCCAGG
GCCCCACGCTGCTCCCTTGGCCTTCTGGGGGCCCCTGTGGTGCTGGATTCCCACCAACCTTGGG
CTTTTGGAGGTTTCAATCCCCGTGTGTTCGGTGGCGTTTCCCCTTATGTTCAAGACATTTACCA
CTAGCAGGCAGTCCTTTCCTGTGTCAGTCACCATAGCCTCCCCCTCTCCCAGCTCCCTATAGAA
CACAGCAGTGGCCAGAGGCATAGCTCTGAAATGGACCCCCCCTGCCTTGCTGCAGCCTTCCCTT
CACCTTCCTCTGATGACTGGGGGCGCCCTGTCTTCCTGACCCAGGGATGATAGTCTTGGTGTCC
CTTCCCTGCAGAGGTCCTACTGAAAATGCATAATATCCCCCCACAATGTCCAGCGAGGCCCAGA
GGTGTGTGGTGGATCCACAGTGGGAAATAAAGGGTGGAGTTCTAGGTCCTATTTACCCAAACTG
GTTTATTATTTCCACCAGCTAGCCAATATGGCTTCCTATGAGCTAGAGGAGATTCAAAGATAAC
AAGACAGATACAGAAGACCACGGGAGGCTCTTTAGAGGCCCTTCCCTGGAAAAGAGATGAGTTG
TACCACAGCCTCAGCTCAGCAGTCAACCCTGAGGGCTGCTCTTCCTACAACTCCAGGCCGGCCC
CATAAGCTTGTTCTCAAACAGTGTTGTCTTAACTCTGTCACACTCATGGGCCTTGTCAGCTTGG
TTATTGTAACTTTACCCCATGATGGGTCCATTGCTGGCAGTGGACAGGTGAAATCCAGGCCCCT
TCTCATTTTTGTCCCAAACTCTTTGAGAAGATGGGACCATCAGAGAGTGTAGCATACCATGAGG
CCACCCTGGGACTCTCAGAGGTTGAAATCAACCCTTATTTCTTATAGATCATTTTTAAATGACC
GTAACACCTGTGGACCATGCAGACAGCACCAGGCCAGGGCCAGCAGCAGGGCTGTCCTAGGCTG
GGGGAAAGACTTGGAGACATAACCTTCTGTGGTATCCTTTCCCTGTGTTTTCTCTGTCTGGGGT
AAGATGCTAAGTGTTTCCCTTGGTAGGCTTCTCAAATCACCAGATACTATTCTGTCGTAGGGAA
ACTTGCTATGGCCCTAAGACTTGGGGGTTATGGGAGTGGTCGCTTTCCATATACAAGTGGAGAA
GGTTCCGTATTTTCTCCAATTCCATATTATCTTAATTACCTGAATCCTAACACCTCTCCAGGCC
ACCTCACACCTGATCACAACTGATCTATTGGCTGGCTGAGGTGTCCCAGCATTAAAACTCCAAT
TCTCAACCAGAAAACGCCACTGGGTGGCCCCTGGGTCTCAGCGCTCCAGATGTTGTCTTCAGGC
ATCCCCTAGTACCATTTTTTCTCAAAGCGCTATTAATCCCATGTCAGGAGAGGTTCCCAGAGCA
GATCTGCTGGCCTGGAAATACTCAGCATTGTGGTCTGCTTCCCTAGGTCCCTGTTGCTCCTAGG
GCCCCTCATAGGCACAGAACCCCCAGCCAGAGGAGACTCTACCTTAAGGCCTGACCACAGACCT
GCAGGGTAGTCTAGACTTCAGCTCTTGCTCATTGGCTCTCTTCAGGAATCCAACCCCTTAGTGC
TTAGGGGCTTGAAGGTGGGGGTAATTAAACCCTTCTGAGCAGTGGGGAGTCTGCTGGCTGTCTA
TGGAGCCTCCCTCTGATGTTCTGAGCCCGAGGTAGGAGTTTCAGATAGTAAGTATGCTGCCCTG
CATGGTTGAGTTGCTTTGGATGTCTGCTAGGCTTCCAGTGCCCTGCCCCCTCCTCATGCCAGAG
AGTCACAATGGCCTGTGCTTAATCACAGCAATAATATATAGGGAGCATCTGTGAGTCCCCTTTG
TCCTGGTCCATCACTCTTCATGGATCTCCCAGGAGACTACTGAGTGGGTCAGTTCATGTGAGAA
TCAATTTATGAAGCTCTGGGCTGTGCAAAGTGTTGTCACAGGAGGCAGGTGAGAGGCCCAGCTC
TGAACTGTGAGTAAGGCAGTGGGAGTGCCTTCCACCCTGAAGCCACCCTTACCTGGAGGAGTTT
AGGCCCTGGCTTTGTAACAGGGCCTATGAATTGGTTAGGACTGTCTTCCAGCTGGACAGCTCTT
GAGAAAGGCACGTGACTAATTTGTGAGCCCATTGCCTGCTATGTCTCCGTTAGTCTGTCTCTCC
CTTTTCATAACTGTGCACATAAAATATACTGGTGTTTGTGTTCCTGGA

hide sequence

RefSeq Acc Id:

XM_017594325 ⟹ XP_017449814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	103,509,457 - 103,552,286 (-)	NCBI
mRatBN7.2	6	97,776,433 - 97,819,269 (-)	NCBI
Rnor_6.0	6	102,152,146 - 102,196,220 (-)	NCBI

Sequence:

show sequence

GCCGCCGCCGCCGCCTGGGGCTGGGTTCCGTGGGGCAGCAGCGGCTGCAGCTCCCCGGGCCCCG
CGCCGCCCAGGCGGCCGCGGACACTCGATGCGGGAATAGTTGCGGGCGGGTGGCGTGGGGGAGG
CTTGTCCGGTCACTCGGCGCGGGGGGAGCCCGAGCGCCGGGCGTGGGGGCAGGGAGCAGGCGGC
GCAGGAGAGCGCCCCGAGTCCCGGCGCGGGAGGAGGAGCCGGAGCCAGCCGGTGAGACCGCGCT
CCTGGCCGCACCTGCGTTGGGCAGACGGCCGCCCGACCCTGCCTTGCCTTGCCCTACCCTCGTC
CCCGGCCCCGCACCGCAGGAGGCCCCAGTTGGTACCATGGCTTCTGCGGAGCCCCTGACAGCGC
TGTCCCGCTGGTACCTATATGCCATCCATGGCTACTTCTGCGAGGTGATGTTCACAGCGGCCTG
GGAGTTCGTGGTGAATTTTAACTGGAAGTTCCCAGGGGTCACCAGCGTGTGGGCCCTCTTCATC
TATGGCACCTCCATCCTGATCGTGGAGCGCATGTACCTGCGCCTGCGAGGCCGCTGCCCTCTTC
TGGTGCGCTGTGTCATCTATACTCTCTGGACCTACCTGTGGGAGTTCACTACCGGCTTTATCCT
ACGCCAGTTCAACGCCTGTCCCTGGGACTACTCCCAGTTCGACTTTGATTTCATGGGCCTCATT
ACCCTAGAGTATGCTGTGCCCTGGTTCTGCGGGGCCCTCATCATGGAGCAGTTTATCATCCGCA
ACACCCTCCGCCTGCGCTTTGACAAGGACGCGGAGCCCGGGGAGCCGGCCAGCCCACCAGCCCT
GGCCAATGGCCACGTCAAGACTGACTGAGTCAGAAGATTAATGTGAGGACCTGAAGTCTCTTGT
AGGAACCCATGAACAGAGAGAGAGAGAGAGAGACCAAGCTGGTGGGGTTACCCCTTGGTTCAGC
ACAAGCCCCGCCCCCAACTGGGTCTTAGCCCAGTAGGGCAAACATAACCACACATGGTGGGCAG
TGGGATGGGTGTTGGGGAGTTGGGTGTCTAGACAACAGAAATACTTTGAGACTCATCCATGCCT
CTCAACACATCCTGGGGGCTGGAGGCTGGGTGGCGAACAATTGGACTTTGATGGATGACTTTGG
AAGCAGCAGACCTGTCCTAACTAAGGGACATGAACTCCGGGGCTACAGGTGGGAGGCAAGGTCT
GAGAAGGCCTTGGCTGCTGTTGGGGCCACCACCTCACCTGCCCCCTGGCTTCAGCTGGGCTTTG
GCTGGTTCCATTAGGCAATATTCAGGTGCTTGCTTGCAACCAATACCTCCCCGGGGGCCTCTGA
GCTGCAGCCTGAGAGAGACCCAGTAGCCAATTGGGCTGCATGGTGGCACTGGTGTTGTGCAAAG
GCCAGGAAAGCTTCCTTTGGCTCCTCTCCCTCTCCCAGGGCCCCACGCTGCTCCCTTGGCCTTC
TGGGGGCCCCTGTGGTGCTGGATTCCCACCAACCTTGGGCTTTTGGAGGTTTCAATCCCCGTGT
GTTCGGTGGCGTTTCCCCTTATGTTCAAGACATTTACCACTAGCAGGCAGTCCTTTCCTGTGTC
AGTCACCATAGCCTCCCCCTCTCCCAGCTCCCTATAGAACACAGCAGTGGCCAGAGGCATAGCT
CTGAAATGGACCCCCCCTGCCTTGCTGCAGCCTTCCCTTCACCTTCCTCTGATGACTGGGGGCG
CCCTGTCTTCCTGACCCAGGGATGATAGTCTTGGTGTCCCTTCCCTGCAGAGGTCCTACTGAAA
ATGCATAATATCCCCCCACAATGTCCAGCGAGGCCCAGAGGTGTGTGGTGGATCCACAGTGGGA
AATAAAGGGTGGAGTTCTAGGTCCTATTTACCCAAACTGGTTTATTATTTCCACCAGCTAGCCA
ATATGGCTTCCTATGAGCTAGAGGAGATTCAAAGATAACAAGACAGATACAGAAGACCACGGGA
GGCTCTTTAGAGGCCCTTCCCTGGAAAAGAGATGAGTTGTACCACAGCCTCAGCTCAGCAGTCA
ACCCTGAGGGCTGCTCTTCCTACAACTCCAGGCCGGCCCCATAAGCTTGTTCTCAAACAGTGTT
GTCTTAACTCTGTCACACTCATGGGCCTTGTCAGCTTGGTTATTGTAACTTTACCCCATGATGG
GTCCATTGCTGGCAGTGGACAGGTGAAATCCAGGCCCCTTCTCATTTTTGTCCCAAACTCTTTG
AGAAGATGGGACCATCAGAGAGTGTAGCATACCATGAGGCCACCCTGGGACTCTCAGAGGTTGA
AATCAACCCTTATTTCTTATAGATCATTTTTAAATGACCGTAACACCTGTGGACCATGCAGACA
GCACCAGGCCAGGGCCAGCAGCAGGGCTGTCCTAGGCTGGGGGAAAGACTTGGAGACATAACCT
TCTGTGGTATCCTTTCCCTGTGTTTTCTCTGTCTGGGGTAAGATGCTAAGTGTTTCCCTTGGTA
GGCTTCTCAAATCACCAGATACTATTCTGTCGTAGGGAAACTTGCTATGGCCCTAAGACTTGGG
GGTTATGGGAGTGGTCGCTTTCCATATACAAGTGGAGAAGGTTCCGTATTTTCTCCAATTCCAT
ATTATCTTAATTACCTGAATCCTAACACCTCTCCAGGCCACCTCACACCTGATCACAACTGATC
TATTGGCTGGCTGAGGTGTCCCAGCATTAAAACTCCAATTCTCAACCAGAAAACGCCACTGGGT
GGCCCCTGGGTCTCAGCGCTCCAGATGTTGTCTTCAGGCATCCCCTAGTACCATTTTTTCTCAA
AGCGCTATTAATCCCATGTCAGGAGAGGTTCCCAGAGCAGATCTGCTGGCCTGGAAATACTCAG
CATTGTGGTCTGCTTCCCTAGGTCCCTGTTGCTCCTAGGGCCCCTCATAGGCACAGAACCCCCA
GCCAGAGGAGACTCTACCTTAAGGCCTGACCACAGACCTGCAGGGTAGTCTAGACTTCAGCTCT
TGCTCATTGGCTCTCTTCAGGAATCCAACCCCTTAGTGCTTAGGGGCTTGAAGGTGGGGGTAAT
TAAACCCTTCTGAGCAGTGGGGAGTCTGCTGGCTGTCTATGGAGCCTCCCTCTGATGTTCTGAG
CCCGAGGTAGGAGTTTCAGATAGTAAGTATGCTGCCCTGCATGGTTGAGTTGCTTTGGATGTCT
GCTAGGCTTCCAGTGCCCTGCCCCCTCCTCATGCCAGAGAGTCACAATGGCCTGTGCTTAATCA
CAGCAATAATATATAGGGAGCATCTGTGAGTCCCCTTTGTCCTGGTCCATCACTCTTCATGGAT
CTCCCAGGAGACTACTGAGTGGGTCAGTTCATGTGAGAATCAATTTATGAAGCTCTGGGCTGTG
CAAAGTGTTGTCACAGGAGGCAGGTGAGAGGCCCAGCTCTGAACTGTGAGTAAGGCAGTGGGAG
TGCCTTCCACCCTGAAGCCACCCTTACCTGGAGGAGTTTAGGCCCTGGCTTTGTAACAGGGCCT
ATGAATTGGTTAGGACTGTCTTCCAGCTGGACAGCTCTTGAGAAAGGCACGTGACTAATTTGTG
AGCCCATTGCCTGCTATGTCTCCGTTAGTCTGTCTCTCCCTTTTCATAACTGTGCACATAAAAT
ATACTGGTGTTTGTGTTCCTGGA

hide sequence

RefSeq Acc Id:

XM_039112767 ⟹ XP_038968695

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	103,509,457 - 103,529,906 (-)	NCBI
mRatBN7.2	6	97,776,433 - 97,792,942 (-)	NCBI

RefSeq Acc Id:

XM_039112770 ⟹ XP_038968698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	103,509,457 - 103,513,549 (-)	NCBI
mRatBN7.2	6	97,776,433 - 97,786,214 (-)	NCBI

RefSeq Acc Id:

XM_063262348 ⟹ XP_063118418

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	103,509,457 - 103,529,907 (-)	NCBI

RefSeq Acc Id:

XM_063262349 ⟹ XP_063118419

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	103,509,457 - 103,533,774 (-)	NCBI

RefSeq Acc Id:

XM_063262350 ⟹ XP_063118420

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	103,509,457 - 103,529,912 (-)	NCBI

RefSeq Acc Id:

XM_063262351 ⟹ XP_063118421

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	103,509,457 - 103,529,912 (-)	NCBI

RefSeq Acc Id:

XM_063262352 ⟹ XP_063118422

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	103,509,457 - 103,552,076 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102829	(Get FASTA)	NCBI Sequence Viewer
	XP_017449802	(Get FASTA)	NCBI Sequence Viewer
	XP_017449804	(Get FASTA)	NCBI Sequence Viewer
	XP_017449805	(Get FASTA)	NCBI Sequence Viewer
	XP_017449808	(Get FASTA)	NCBI Sequence Viewer
	XP_017449814	(Get FASTA)	NCBI Sequence Viewer
	XP_038968695	(Get FASTA)	NCBI Sequence Viewer
	XP_038968698	(Get FASTA)	NCBI Sequence Viewer
	XP_063118418	(Get FASTA)	NCBI Sequence Viewer
	XP_063118419	(Get FASTA)	NCBI Sequence Viewer
	XP_063118420	(Get FASTA)	NCBI Sequence Viewer
	XP_063118421	(Get FASTA)	NCBI Sequence Viewer
	XP_063118422	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM03712	(Get FASTA)	NCBI Sequence Viewer
	EDM03713	(Get FASTA)	NCBI Sequence Viewer
	EDM03714	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014132
	ENSRNOP00000014132.2
	ENSRNOP00000076560
	ENSRNOP00000076560.1
	ENSRNOP00000086127.1
	ENSRNOP00000097942
	ENSRNOP00000097942.1

RefSeq Acc Id:	NP_001102829 ⟸ NM_001109359
- UniProtKB:	D4ACC3 (UniProtKB/TrEMBL), A6HCF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASAEPLTALSRWYLYAIHGYFCEVMFTAAWEFVVNFNWKFPGVTSVWALFIYGTSILIVERMY LRLRGRCPLLVRCVIYTLWTYLWEFTTGFILRQFNACPWDYSQFDFDFMGLITLEYAVPWFCGA LIMEQFIIRNTLRLRFDKDAEPGEPASPPALANGHVKTD hide sequence

RefSeq Acc Id:	XP_017449805 ⟸ XM_017594316
- Peptide Label:	isoform X1
- UniProtKB:	D4ACC3 (UniProtKB/TrEMBL), A6HCF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASAEPLTALSRWYLYAIHGYFCEVMFTAAWEFVVNFNWKFPGVTSVWALFIYGTSILIVERMY LRLRGRCPLLVRCVIYTLWTYLWEFTTGFILRQFNACPWDYSQFDFDFMGLITLEYAVPWFCGA LIMEQFIIRNTLRLRFDKDAEPGEPASPPALANGHVKTD hide sequence

RefSeq Acc Id:	XP_017449808 ⟸ XM_017594319
- Peptide Label:	isoform X1
- UniProtKB:	D4ACC3 (UniProtKB/TrEMBL), A6HCF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASAEPLTALSRWYLYAIHGYFCEVMFTAAWEFVVNFNWKFPGVTSVWALFIYGTSILIVERMY LRLRGRCPLLVRCVIYTLWTYLWEFTTGFILRQFNACPWDYSQFDFDFMGLITLEYAVPWFCGA LIMEQFIIRNTLRLRFDKDAEPGEPASPPALANGHVKTD hide sequence

RefSeq Acc Id:	XP_017449814 ⟸ XM_017594325
- Peptide Label:	isoform X1
- UniProtKB:	D4ACC3 (UniProtKB/TrEMBL), A6HCF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASAEPLTALSRWYLYAIHGYFCEVMFTAAWEFVVNFNWKFPGVTSVWALFIYGTSILIVERMY LRLRGRCPLLVRCVIYTLWTYLWEFTTGFILRQFNACPWDYSQFDFDFMGLITLEYAVPWFCGA LIMEQFIIRNTLRLRFDKDAEPGEPASPPALANGHVKTD hide sequence

RefSeq Acc Id:	XP_017449802 ⟸ XM_017594313
- Peptide Label:	isoform X1
- UniProtKB:	D4ACC3 (UniProtKB/TrEMBL), A6HCF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASAEPLTALSRWYLYAIHGYFCEVMFTAAWEFVVNFNWKFPGVTSVWALFIYGTSILIVERMY LRLRGRCPLLVRCVIYTLWTYLWEFTTGFILRQFNACPWDYSQFDFDFMGLITLEYAVPWFCGA LIMEQFIIRNTLRLRFDKDAEPGEPASPPALANGHVKTD hide sequence

RefSeq Acc Id:	XP_017449804 ⟸ XM_017594315
- Peptide Label:	isoform X1
- UniProtKB:	D4ACC3 (UniProtKB/TrEMBL), A6HCF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASAEPLTALSRWYLYAIHGYFCEVMFTAAWEFVVNFNWKFPGVTSVWALFIYGTSILIVERMY LRLRGRCPLLVRCVIYTLWTYLWEFTTGFILRQFNACPWDYSQFDFDFMGLITLEYAVPWFCGA LIMEQFIIRNTLRLRFDKDAEPGEPASPPALANGHVKTD hide sequence

RefSeq Acc Id:

ENSRNOP00000014132 ⟸ ENSRNOT00000014132

RefSeq Acc Id:	XP_038968695 ⟸ XM_039112767
- Peptide Label:	isoform X1
- UniProtKB:	D4ACC3 (UniProtKB/TrEMBL), A6HCF8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968698 ⟸ XM_039112770
- Peptide Label:	isoform X1
- UniProtKB:	D4ACC3 (UniProtKB/TrEMBL), A6HCF8 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000097942 ⟸ ENSRNOT00000119192

RefSeq Acc Id:

ENSRNOP00000076560 ⟸ ENSRNOT00000096653

RefSeq Acc Id:

ENSRNOP00000086127 ⟸ ENSRNOT00000098038

RefSeq Acc Id:	XP_063118422 ⟸ XM_063262352
- Peptide Label:	isoform X1
- UniProtKB:	A6HCF8 (UniProtKB/TrEMBL), D4ACC3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118419 ⟸ XM_063262349
- Peptide Label:	isoform X1
- UniProtKB:	A6HCF8 (UniProtKB/TrEMBL), D4ACC3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118421 ⟸ XM_063262351
- Peptide Label:	isoform X1
- UniProtKB:	A6HCF8 (UniProtKB/TrEMBL), D4ACC3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118420 ⟸ XM_063262350
- Peptide Label:	isoform X1
- UniProtKB:	A6HCF8 (UniProtKB/TrEMBL), D4ACC3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118418 ⟸ XM_063262348
- Peptide Label:	isoform X1
- UniProtKB:	A6HCF8 (UniProtKB/TrEMBL), D4ACC3 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ACC3-F1-model_v2	AlphaFold	D4ACC3	1-167	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562622	AgrOrtholog
BioCyc Gene	G2FUF-36981	BioCyc
Ensembl Genes	ENSRNOG00000010646	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014132.5	UniProtKB/TrEMBL
	ENSRNOT00000096653.1	UniProtKB/TrEMBL
	ENSRNOT00000098038.1	UniProtKB/TrEMBL
	ENSRNOT00000119192.1	UniProtKB/TrEMBL
InterPro	DUF1113	UniProtKB/TrEMBL
KEGG Report	rno:503035	UniProtKB/TrEMBL
NCBI Gene	503035	ENTREZGENE
PANTHER	TRANSMEMBRANE PROTEIN 229 FAMILY MEMBER	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 229B	UniProtKB/TrEMBL
Pfam	DUF1113	UniProtKB/TrEMBL
PhenoGen	Tmem229b	PhenoGen
RatGTEx	ENSRNOG00000010646	RatGTEx
UniProt	A6HCF8	ENTREZGENE, UniProtKB/TrEMBL
	D4ACC3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-02-12	Tmem229b	transmembrane protein 229B	RGD1562622	similar to RIKEN cDNA 6330442E10 gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1562622	similar to RIKEN cDNA 6330442E10 gene	RGD1562622_predicted	similar to RIKEN cDNA 6330442E10 gene (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1562622_predicted	similar to RIKEN cDNA 6330442E10 gene (predicted)	LOC503035	similar to RIKEN cDNA 6330442E10 gene	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC503035	similar to RIKEN cDNA 6330442E10 gene			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar