Spmap2l (sperm microtubule associated protein 2 like) - Rat Genome Database

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Gene: Spmap2l (sperm microtubule associated protein 2 like) Rattus norvegicus
Analyze
Symbol: Spmap2l (Ensembl: Thegl)
Name: sperm microtubule associated protein 2 like (Ensembl:theg spermatid protein-like)
RGD ID: 1562571
Description: Orthologous to human SPMAP2L (sperm microtubule associated protein 2 like); INTERACTS WITH 17beta-estradiol 3-benzoate; acetamide; atrazine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC498350; LOC498350; similar to testicular haploid expressed gene product isoform 2; sperm microtubule associated protein 2-like; testicular haploid expressed gene protein-like; theg spermatid protein-like; Thegl; uncharacterized protein LOC498350
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81431,464,382 - 31,507,027 (-)NCBIGRCr8
mRatBN7.21431,110,104 - 31,152,487 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1431,110,106 - 31,151,561 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1431,487,775 - 31,529,417 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01432,796,110 - 32,837,749 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01431,280,778 - 31,322,421 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01433,389,511 - 33,431,862 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1433,389,513 - 33,430,956 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01433,180,109 - 33,222,348 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41433,403,954 - 33,446,249 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1430,423,313 - 30,464,777 (-)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Spmap2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81431,464,382 - 31,507,027 (-)NCBIGRCr8
mRatBN7.21431,110,104 - 31,152,487 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1431,110,106 - 31,151,561 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1431,487,775 - 31,529,417 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01432,796,110 - 32,837,749 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01431,280,778 - 31,322,421 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01433,389,511 - 33,431,862 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1433,389,513 - 33,430,956 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01433,180,109 - 33,222,348 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41433,403,954 - 33,446,249 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1430,423,313 - 30,464,777 (-)NCBICelera
Cytogenetic Map14p11NCBI
SPMAP2L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38456,530,606 - 56,626,214 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl456,530,606 - 56,603,507 (+)EnsemblGRCh38hg38GRCh38
GRCh37457,396,772 - 57,469,673 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera454,902,790 - 54,976,066 (+)NCBICelera
Cytogenetic Map4q12NCBI
HuRef453,350,873 - 53,423,556 (+)NCBIHuRef
CHM1_1457,431,911 - 57,504,682 (+)NCBICHM1_1
T2T-CHM13v2.0460,018,614 - 60,114,234 (+)NCBIT2T-CHM13v2.0
Spmap2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39577,163,879 - 77,209,382 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl577,163,870 - 77,209,376 (+)EnsemblGRCm39 Ensembl
GRCm38577,016,023 - 77,061,541 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl577,016,023 - 77,061,529 (+)EnsemblGRCm38mm10GRCm38
MGSCv37577,445,048 - 77,490,547 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36578,090,798 - 78,136,297 (+)NCBIMGSCv36mm8
Celera574,283,908 - 74,329,837 (+)NCBICelera
Cytogenetic Map5C3.3NCBI
cM Map541.45NCBI
Spmap2l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544714,454,884 - 14,496,320 (-)NCBIChiLan1.0ChiLan1.0
SPMAP2L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2373,168,842 - 73,248,284 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1473,374,351 - 73,453,802 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0467,317,663 - 67,392,019 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1473,888,059 - 73,961,523 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl473,888,059 - 73,961,523 (-)Ensemblpanpan1.1panPan2
SPMAP2L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11348,751,044 - 48,796,489 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1348,750,444 - 48,795,873 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1348,641,581 - 48,688,181 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01349,365,380 - 49,412,033 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1349,362,165 - 49,411,410 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11349,037,392 - 49,083,992 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01348,566,210 - 48,612,750 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01349,512,273 - 49,558,422 (+)NCBIUU_Cfam_GSD_1.0
Spmap2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528527,495,065 - 27,552,081 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648218,746,254 - 18,802,934 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648218,746,254 - 18,802,958 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPMAP2L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl855,787,215 - 55,830,694 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1855,787,215 - 55,830,380 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2857,718,508 - 57,762,394 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPMAP2L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1712,017,163 - 12,098,983 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl712,017,396 - 12,098,871 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606612,690,794 - 12,773,567 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spmap2l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476112,839,260 - 12,895,886 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Spmap2l
329 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:189
Count of miRNA genes:134
Interacting mature miRNAs:153
Transcripts:ENSRNOT00000002860
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143076702539153750Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat

Markers in Region
D14Rat14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21431,153,350 - 31,153,547 (+)MAPPERmRatBN7.2
Rnor_6.01433,432,745 - 33,432,941NCBIRnor6.0
Rnor_5.01433,223,207 - 33,223,403UniSTSRnor5.0
RGSC_v3.41433,448,037 - 33,448,234RGDRGSC3.4
RGSC_v3.41433,448,038 - 33,448,234UniSTSRGSC3.4
RGSC_v3.11433,448,037 - 33,448,234RGD
Celera1430,466,566 - 30,466,762UniSTS
RH 3.4 Map14419.8RGD
RH 3.4 Map14419.8UniSTS
RH 2.0 Map14377.4RGD
SHRSP x BN Map1420.3799RGD
Cytogenetic Map14p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7
Low 3 15 3 18 3 1 1 10 7 17 11 1
Below cutoff 25 35 31 1 31 7 9 44 26 16 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000002860   ⟹   ENSRNOP00000002860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1431,110,106 - 31,151,561 (-)Ensembl
Rnor_6.0 Ensembl1433,389,513 - 33,430,956 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094277   ⟹   ENSRNOP00000081277
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1431,110,106 - 31,151,561 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118599   ⟹   ENSRNOP00000087292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1431,122,367 - 31,140,431 (-)Ensembl
RefSeq Acc Id: NM_001017498   ⟹   NP_001017498
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,464,382 - 31,505,834 (-)NCBI
mRatBN7.21431,110,104 - 31,151,561 (-)NCBI
Rnor_6.01433,389,511 - 33,430,956 (-)NCBI
Rnor_5.01433,180,109 - 33,222,348 (-)NCBI
RGSC_v3.41433,403,954 - 33,446,249 (-)RGD
Celera1430,423,313 - 30,464,777 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250846   ⟹   XP_006250908
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,465,313 - 31,507,027 (-)NCBI
mRatBN7.21431,110,104 - 31,152,487 (-)NCBI
Rnor_6.01433,390,435 - 33,431,862 (-)NCBI
Rnor_5.01433,180,109 - 33,222,348 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039092284   ⟹   XP_038948212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,465,313 - 31,490,454 (-)NCBI
mRatBN7.21431,110,104 - 31,136,138 (-)NCBI
RefSeq Acc Id: XM_063273462   ⟹   XP_063129532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,465,313 - 31,490,412 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001017498   ⟸   NM_001017498
- UniProtKB: Q5PQR6 (UniProtKB/Swiss-Prot),   A0A8I5ZRA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250908   ⟸   XM_006250846
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZRA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000002860   ⟸   ENSRNOT00000002860
RefSeq Acc Id: XP_038948212   ⟸   XM_039092284
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000087292   ⟸   ENSRNOT00000118599
RefSeq Acc Id: ENSRNOP00000081277   ⟸   ENSRNOT00000094277
RefSeq Acc Id: XP_063129532   ⟸   XM_063273462
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PQR6-F1-model_v2 AlphaFold Q5PQR6 1-454 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699268
Promoter ID:EPDNEW_R9792
Type:initiation region
Name:Thegl_1
Description:theg spermatid protein-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01433,430,927 - 33,430,987EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562571 AgrOrtholog
BioCyc Gene G2FUF-15973 BioCyc
Ensembl Genes ENSRNOG00000002085 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055005064 UniProtKB/Swiss-Prot
  ENSRNOG00060017669 UniProtKB/Swiss-Prot
  ENSRNOG00065020160 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000002860 ENTREZGENE
  ENSRNOT00000002860.5 UniProtKB/Swiss-Prot
  ENSRNOT00000094277.1 UniProtKB/TrEMBL
  ENSRNOT00000118599.1 UniProtKB/TrEMBL
  ENSRNOT00055008101 UniProtKB/Swiss-Prot
  ENSRNOT00060030264 UniProtKB/Swiss-Prot
  ENSRNOT00065034020 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7132384 IMAGE-MGC_LOAD
InterPro THEG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  THEG-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:498350 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94301 IMAGE-MGC_LOAD
NCBI Gene 498350 ENTREZGENE
PANTHER PTHR15901 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TESTICULAR HAPLOID EXPRESSED GENE PROTEIN-LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam THEG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Spmap2l PhenoGen
RatGTEx ENSRNOG00000002085 RatGTEx
  ENSRNOG00055005064 RatGTEx
  ENSRNOG00060017669 RatGTEx
  ENSRNOG00065020160 RatGTEx
SMART THEG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZRA6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A2X9_RAT UniProtKB/TrEMBL
  Q5PQR6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-22 Spmap2l  sperm microtubule associated protein 2 like  Thegl  theg spermatid protein-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-11-07 Thegl  theg spermatid protein-like  LOC498350  similar to testicular haploid expressed gene product isoform 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC498350  similar to testicular haploid expressed gene product isoform 2      Symbol and Name status set to provisional 70820 PROVISIONAL