Rpl19l1 (ribosomal protein L19 like 1) - Rat Genome Database

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Gene: Rpl19l1 (ribosomal protein L19 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl19l1 (Ensembl: RGD1562420)
Name: ribosomal protein L19 like 1 (Ensembl:similar to hypothetical protein)
RGD ID: 1562420
Description: Predicted to be involved in translation; INTERACTS WITH Monobutylphthalate; rotenone.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L19-like; large ribosomal subunit protein eL19-like; LOC314532; RGD1562420; similar to hypothetical protein
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86145,591,420 - 145,594,687 (+)NCBIGRCr8
mRatBN7.26139,448,445 - 139,451,661 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6139,450,713 - 139,451,582 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.06146,394,140 - 146,395,102 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6146,394,456 - 146,395,025 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06155,303,526 - 155,306,740 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46145,771,191 - 145,823,403 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6137,101,782 - 137,102,744 (+)NCBICelera
Cytogenetic Map6q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl19l1
19 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:24
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000007683
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 1 4 6 1
Low 1 36 51 35 17 35 4 4 69 30 33 9 4
Below cutoff 1 6 5 5 1 5 4 6 4 1 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000007683   ⟹   ENSRNOP00000007683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6139,450,713 - 139,451,582 (+)Ensembl
Rnor_6.0 Ensembl6146,394,456 - 146,395,025 (+)Ensembl
RefSeq Acc Id: XM_039113046   ⟹   XP_038968974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86145,591,420 - 145,594,687 (+)NCBI
mRatBN7.26139,448,445 - 139,451,661 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038968974 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000007683.5
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000007683   ⟸   ENSRNOT00000007683
RefSeq Acc Id: XP_038968974   ⟸   XM_039113046
Protein Domains
Large ribosomal subunit protein eL19

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M5A9-F1-model_v2 AlphaFold F1M5A9 1-189 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694915
Promoter ID:EPDNEW_R5436
Type:single initiation site
Name:RGD1562420_1
Description:similar to hypothetical protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06146,394,441 - 146,394,501EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562420 AgrOrtholog
BioCyc Gene G2FUF-35464 BioCyc
Ensembl Genes ENSRNOG00000005826 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007683.6 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1200.240 UniProtKB/TrEMBL
  1.10.1650.10 UniProtKB/TrEMBL
InterPro 60S_ribosomal_L19/L19e_sf UniProtKB/TrEMBL
  Ribosomal_L19/L19e_dom UniProtKB/TrEMBL
  Ribosomal_L19/L19e_dom1 UniProtKB/TrEMBL
  Ribosomal_L19_euka UniProtKB/TrEMBL
  RPL19 UniProtKB/TrEMBL
NCBI Gene 314532 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L19 UniProtKB/TrEMBL
  PTHR10722 UniProtKB/TrEMBL
Pfam Ribosomal_L19e UniProtKB/TrEMBL
PhenoGen Rpl19l1 PhenoGen
RatGTEx ENSRNOG00000005826 RatGTEx
SMART Ribosomal_L19e UniProtKB/TrEMBL
Superfamily-SCOP SSF48140 UniProtKB/TrEMBL
UniProt F1M5A9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rpl19l1  ribosomal protein L19 like 1  RGD1562420  similar to hypothetical protein  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1562420  similar to hypothetical protein   RGD1562420_predicted  similar to hypothetical protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562420_predicted  similar to hypothetical protein (predicted)  LOC314532  similar to hypothetical protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC314532  similar to hypothetical protein      Symbol and Name status set to provisional 70820 PROVISIONAL