Sap25 (Sin3A-associated protein 25) - Rat Genome Database

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Gene: Sap25 (Sin3A-associated protein 25) Rattus norvegicus
Analyze
Symbol: Sap25
Name: Sin3A-associated protein 25
RGD ID: 1562406
Description: Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human SAP25 (Sin3A associated protein 25); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone deacetylase complex subunit SAP25; LOC288559; RGD1562406; similar to FLJ00248 protein; sin3A-binding protein, SAP25
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81224,692,548 - 24,693,683 (-)NCBIGRCr8
mRatBN7.21219,055,762 - 19,057,425 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1219,055,763 - 19,076,089 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01222,125,568 - 22,126,671 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,125,571 - 22,127,021 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01224,142,944 - 24,144,637 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41219,705,736 - 19,707,247 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1220,861,157 - 20,862,260 (-)NCBICelera
Cytogenetic Map12q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Sap25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81224,692,548 - 24,693,683 (-)NCBIGRCr8
mRatBN7.21219,055,762 - 19,057,425 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1219,055,763 - 19,076,089 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01222,125,568 - 22,126,671 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,125,571 - 22,127,021 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01224,142,944 - 24,144,637 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41219,705,736 - 19,707,247 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1220,861,157 - 20,862,260 (-)NCBICelera
Cytogenetic Map12q12NCBI
SAP25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,572,228 - 100,573,900 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7100,572,228 - 100,573,900 (-)EnsemblGRCh38hg38GRCh38
GRCh377100,169,851 - 100,171,523 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera794,899,650 - 94,901,069 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef794,801,523 - 94,802,942 (-)NCBIHuRef
CHM1_17100,100,425 - 100,101,844 (-)NCBICHM1_1
T2T-CHM13v2.07101,812,311 - 101,813,983 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,529,486 - 99,530,905 (-)NCBI
Sap25
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395137,639,735 - 137,641,164 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5137,639,596 - 137,641,164 (+)EnsemblGRCm39 Ensembl
GRCm385137,641,473 - 137,642,902 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5137,641,334 - 137,642,902 (+)EnsemblGRCm38mm10GRCm38
MGSCv375138,082,701 - 138,084,130 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365138,082,701 - 138,084,127 (+)NCBIMGSCv36mm8
Celera5134,624,779 - 134,626,207 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.59NCBI
Sap25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955573328,212 - 329,890 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955573328,212 - 329,897 (+)NCBIChiLan1.0ChiLan1.0
SAP25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26118,478,268 - 118,485,353 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17166,748,306 - 166,749,985 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0792,599,340 - 92,601,029 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17106,001,455 - 106,002,892 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7106,001,455 - 106,002,918 (-)Ensemblpanpan1.1panPan2
SAP25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,113,955 - 9,115,567 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl69,114,032 - 9,116,094 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha610,818,598 - 10,820,173 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.069,048,368 - 9,049,943 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl69,048,411 - 9,050,473 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.168,900,891 - 8,902,466 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.068,878,562 - 8,880,137 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.069,060,781 - 9,062,356 (+)NCBIUU_Cfam_GSD_1.0
Sap25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,404,444 - 133,406,342 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936543630,300 - 631,698 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936543629,437 - 632,226 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAP25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,497,453 - 8,499,154 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,497,449 - 8,500,546 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.237,840,547 - 7,842,272 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SAP25
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,639,501 - 12,641,113 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660703,663,647 - 3,665,333 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sap25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474016,504,070 - 16,505,445 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474016,503,994 - 16,505,554 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sap25
5 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121300829619212979Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)121502518320794014Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat

Markers in Region
RH141548  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21219,058,182 - 19,058,390 (+)MAPPERmRatBN7.2
Rnor_6.01222,127,988 - 22,128,195NCBIRnor6.0
Rnor_5.01224,145,364 - 24,145,571UniSTSRnor5.0
RGSC_v3.41219,704,621 - 19,704,828UniSTSRGSC3.4
Celera1220,863,577 - 20,863,784UniSTS
Cytogenetic Map12q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 7 13 2 11 14 8
Low 43 50 41 6 41 8 11 72 24 27 3 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000076261   ⟹   ENSRNOP00000068096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1222,125,571 - 22,127,021 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076328   ⟹   ENSRNOP00000068005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1222,125,571 - 22,126,350 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084480   ⟹   ENSRNOP00000072688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1222,125,692 - 22,126,858 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115724   ⟹   ENSRNOP00000093054
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1219,055,763 - 19,076,089 (-)Ensembl
RefSeq Acc Id: XM_008769160   ⟹   XP_008767382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81224,692,548 - 24,693,683 (-)NCBI
mRatBN7.21219,055,762 - 19,057,425 (-)NCBI
Rnor_6.01222,125,568 - 22,126,671 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008767382 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000093054
  ENSRNOP00000093054.1
Reference Protein Sequences
RefSeq Acc Id: XP_008767382   ⟸   XM_008769160
- UniProtKB: A0A8I6AJ79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000072688   ⟸   ENSRNOT00000084480
RefSeq Acc Id: ENSRNOP00000068096   ⟸   ENSRNOT00000076261
RefSeq Acc Id: ENSRNOP00000068005   ⟸   ENSRNOT00000076328
RefSeq Acc Id: ENSRNOP00000093054   ⟸   ENSRNOT00000115724

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K3L6-F1-model_v2 AlphaFold A0A0G2K3L6 1-259 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562406 AgrOrtholog
BioCyc Gene G2FUF-19714 BioCyc
Ensembl Genes ENSRNOG00000051023 Ensembl
  ENSRNOG00000066351 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000115724.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.710 UniProtKB/TrEMBL
InterPro SAP25 UniProtKB/TrEMBL
KEGG Report rno:288559 UniProtKB/TrEMBL
NCBI Gene 288559 ENTREZGENE
PANTHER HISTONE DEACETYLASE COMPLEX SUBUNIT SAP25 UniProtKB/TrEMBL
  PTHR39231 UniProtKB/TrEMBL
Pfam SAP25 UniProtKB/TrEMBL
PhenoGen Sap25 PhenoGen
RatGTEx ENSRNOG00000051023 RatGTEx
  ENSRNOG00000066351 RatGTEx
UniProt A0A8I6AJ79 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Sap25  Sin3A-associated protein 25  Sap25  Sin3A-associated protein 25  Data merged from RGD:149736391 737654 PROVISIONAL
2021-08-09 Sap25  Sin3A-associated protein 25      Symbol and Name status set to provisional 45752 PROVISIONAL
2011-06-10 Sap25  Sin3A-associated protein 25  Sap25  sin3A-binding protein, SAP25  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-25 Sap25  sin3A-binding protein, SAP25  RGD1562406  similar to FLJ00248 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562406  similar to FLJ00248 protein   RGD1562406_predicted  similar to FLJ00248 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562406_predicted  similar to FLJ00248 protein (predicted)  LOC288559  similar to FLJ00248 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC288559  similar to FLJ00248 protein      Symbol and Name status set to provisional 70820 PROVISIONAL