Apol9a (apolipoprotein L9a) - Rat Genome Database

Name: Apol9a
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Apol9a (apolipoprotein L9a) Rattus norvegicus

Analyze

Symbol:

Apol9a

Name:

apolipoprotein L9a (Ensembl:apolipoprotein L 9a)

RGD ID:

1562332

Description:

Predicted to enable lipid binding activity. Predicted to be involved in lipid transport and lipoprotein metabolic process. Predicted to be located in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human APOL1 (apolipoprotein L1) and APOL2 (apolipoprotein L2); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

apolipoprotein L 9a; hypothetical protein LOC503164; LOC503164

RGD Orthologs

Human

Mouse

Green Monkey

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	APOL4 (apolipoprotein L4)	HGNC	Ensembl, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Apol9a (apolipoprotein L 9a)	RGD	RGD
Chlorocebus sabaeus (green monkey):	APOL4 (apolipoprotein L4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	APOL3 (apolipoprotein L3)	HGNC	Ensembl, OrthoDB, Panther, PhylomeDB, Treefam
Homo sapiens (human):	APOL2 (apolipoprotein L2)	HGNC	Ensembl, OrthoDB, Panther, PhylomeDB, Treefam
Homo sapiens (human):	APOL1 (apolipoprotein L1)	HGNC	Ensembl, OrthoDB, Panther, PhylomeDB, Treefam
Alliance orthologs ³
Mus musculus (house mouse):	Apol9b (apolipoprotein L 9b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	APOL2 (apolipoprotein L2)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Homo sapiens (human):	APOL1 (apolipoprotein L1)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Apol9a (apolipoprotein L 9a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:cabz01007802.1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	apol1 (apolipoprotein L, 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	si:cabz01007807.1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	si:rp71-1g18.13	Alliance	DIOPT (InParanoid\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	F07F6.7	Alliance	DIOPT (Ensembl Compara\|InParanoid\|PANTHER)
Caenorhabditis elegans (roundworm):	F07F6.8	Alliance	DIOPT (Ensembl Compara\|InParanoid\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	111,021,452 - 111,030,380 (-)	NCBI		GRCr8
mRatBN7.2	7	109,140,871 - 109,149,799 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	109,140,871 - 109,147,649 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	110,896,421 - 110,903,180 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	113,120,004 - 113,126,763 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	113,081,441 - 113,088,205 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	118,927,013 - 118,933,778 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	118,927,008 - 118,933,812 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	118,924,869 - 118,931,634 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	115,472,725 - 115,479,486 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	105,488,312 - 105,495,073 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenylosuccinase lyase deficiency (ISO)

COVID-19 (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (EXP)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (EXP)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucose (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

butanal (ISO)

C60 fullerene (EXP)

cadmium dichloride (EXP)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlormequat chloride (EXP)

chloroprene (EXP)

chrysene (ISO)

copper atom (EXP)

copper(0) (EXP)

D-glucose (ISO)

dexamethasone (ISO)

dichloroacetic acid (ISO)

diethyl maleate (EXP)

dimethylarsinic acid (ISO)

dioxygen (EXP)

epoxiconazole (ISO)

flutamide (EXP)

fructose (ISO)

furan (EXP)

gentamycin (EXP)

glucose (ISO)

glycidol (EXP)

glyphosate (ISO)

GW 4064 (ISO)

indometacin (ISO)

lead(0) (ISO)

methylarsonic acid (ISO)

N-nitrosodiethylamine (EXP)

N-nitrosodimethylamine (EXP)

nickel atom (ISO)

paracetamol (EXP)

pentachlorophenol (ISO)

pentanal (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propanal (ISO)

rotenone (EXP)

sodium arsenate (ISO)

sodium arsenite (ISO)

succimer (ISO)

tamoxifen (ISO)

testosterone (EXP)

tetraphene (ISO)

Theaflavin 3,3'-digallate (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lipid transport (IEA)

lipoprotein metabolic process (IEA)

Cellular Component

extracellular region (IEA)

intracellular membrane-bounded organelle (ISO)

membrane (IEA)

Molecular Function

lipid binding (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Apol9a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	111,021,452 - 111,030,380 (-)	NCBI		GRCr8
mRatBN7.2	7	109,140,871 - 109,149,799 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	109,140,871 - 109,147,649 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	110,896,421 - 110,903,180 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	113,120,004 - 113,126,763 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	113,081,441 - 113,088,205 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	118,927,013 - 118,933,778 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	118,927,008 - 118,933,812 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	118,924,869 - 118,931,634 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	115,472,725 - 115,479,486 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	105,488,312 - 105,495,073 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

APOL4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	36,189,128 - 36,204,833 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	36,189,124 - 36,204,840 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	36,585,176 - 36,600,879 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	34,915,122 - 34,930,825 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	34,909,675 - 34,925,379	NCBI
Celera	22	20,387,749 - 20,403,452 (-)	NCBI		Celera
Cytogenetic Map	22	q12.3	NCBI
HuRef	22	19,553,303 - 19,569,009 (-)	NCBI		HuRef
CHM1_1	22	36,544,308 - 36,559,997 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	36,649,310 - 36,664,999 (-)	NCBI		T2T-CHM13v2.0

Apol9a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	77,287,989 - 77,295,280 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	77,287,989 - 77,295,335 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	77,403,789 - 77,411,080 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	77,403,789 - 77,411,135 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	77,234,219 - 77,241,510 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	77,231,044 - 77,238,382 (-)	NCBI		MGSCv36	mm8
Celera	15	78,892,749 - 78,894,701 (-)	NCBI		Celera
Cytogenetic Map	15	D3	NCBI
cM Map	15	36.4	NCBI

APOL4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	18,907,967 - 18,917,968 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666045	106,981,189 - 106,991,930 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Apol9a
17 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	214
Count of miRNA genes:	157
Interacting mature miRNAs:	168
Transcripts:	ENSRNOT00000031951
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	41333674	119109060	Rat
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	44421311	118198041	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	68938720	113886318	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	68938720	113886318	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	68938720	113886318	Rat
631540	Bw9	Body weight QTL 9	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	7	69736226	117455174	Rat
1357338	Stl17	Serum triglyceride level QTL 17	3.23		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	69736356	112729554	Rat
634331	Pia17	Pristane induced arthritis QTL 17	4.7		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	7	73829340	130221005	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
631529	Tls2	T-lymphoma susceptibility QTL 2	0	0.001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	7	80221299	109401111	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	80221299	112308525	Rat
1331728	Bp214	Blood pressure QTL 214	2.825		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	80221299	124373579	Rat
1331768	Kidm10	Kidney mass QTL 10	4.62096		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	80221299	125221299	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	81737938	126737938	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	83153392	128153392	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
71114	Niddm14	Non-insulin dependent diabetes mellitus QTL 14	4.5		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	84257275	129257275	Rat
2298475	Eau6	Experimental allergic uveoretinitis QTL 6		0.0029	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	7	84257275	129257275	Rat
1558655	Swd4	Spike wave discharge measurement QTL 4	3.68	0.0002	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge severity grade (CMO:0001988)	7	86983365	131983365	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	90482196	135012528	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	91281130	135012528	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	91412594	129807172	Rat
2313102	Bmd79	Bone mineral density QTL 79	2.3	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	7	94811085	116738842	Rat
1357336	Gluco6	Glucose level QTL 6	3.4		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	7	94811326	116294265	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	96670164	135012528	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	102297359	133492884	Rat
70159	Bp61	Blood pressure QTL 61		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	103146217	116738842	Rat
731174	Uae23	Urinary albumin excretion QTL 23	2.4	0.0042	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	7	104603555	135012528	Rat
2306821	Bp335	Blood pressure QTL 335		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	106571501	135012528	Rat

Markers in Region

RH137445

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	109,140,932 - 109,141,149 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	118,927,079 - 118,927,295	NCBI	Rnor6.0
Rnor_5.0	7	118,924,935 - 118,925,151	UniSTS	Rnor5.0
RGSC_v3.4	7	115,472,787 - 115,473,003	UniSTS	RGSC3.4
Celera	7	105,488,374 - 105,488,590	UniSTS
Cytogenetic Map	7	q34	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	23	16	16		16	8	11		2	6	10	8
Low	1	20	23	7	19	7			27	19	17	1
Below cutoff			10	10		10			19	12	9

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000031951 ⟹ ENSRNOP00000036679

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	109,140,871 - 109,147,649 (-)	Ensembl
Rnor_6.0 Ensembl	7	118,927,008 - 118,933,812 (-)	Ensembl

RefSeq Acc Id:

NM_001025066 ⟹ NP_001020237

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	111,021,452 - 111,028,213 (-)	NCBI
mRatBN7.2	7	109,140,871 - 109,147,632 (-)	NCBI
Rnor_6.0	7	118,927,017 - 118,933,778 (-)	NCBI
Rnor_5.0	7	118,924,869 - 118,931,634 (-)	NCBI
RGSC_v3.4	7	115,472,725 - 115,479,486 (-)	RGD
Celera	7	105,488,312 - 105,495,073 (-)	RGD

Sequence:

show sequence

GCCAGCTGCTTCTACACAGCCACGGCCATCTGATCCTGCTCAAGCTCAGTAAGTTGAGCCTCTT
CACCCCTCTGCCTCTGCATCCTCATAAAGCTACCTCAAGACAGAGCGTAACTGCCTCATTCTAG
GAGTGGACTCGGGGAAGACAGCAGACACACCATCAGGGAGCCCCTGGGTATCTCCAGAACATGG
CAAGCCGTGGATACCTGCATCACCTGCTGACTGCAGAGGGAGCCTGGGAGGAGTTTGTATCAAA
GGCCAAGTTGCCCAGGGATAGGGCAGTGGCCCTCCACAAAGCACTGAGGGATCTGACAGCACTC
TTGGCCATAGCAGAAAGAGGCAGATCTCGGAAAGGCTGGAAAGGCAAGGAGAAGTTTGTGAAAG
CATTTCCTTGCTTGAAAGCAGACTTGGAGGAGCACATCAGCCAGCTCTATGCCCTAGCCGACCA
TGCTGAGGAACTGCACAGGGGCTGCACCGTCTCCAACATGGTGGCTGACTCCTTCAGTGTTGCC
TCCGACATCCTGAACCTCTTTGGTCTCTTTCTGGCACCTGAGTCAGCAGAGGGAAGTCTGGTGC
TCTCGGCAGCAGGCTTGGGGCTGGGGGTAGCAGCTACTGTGACTAATGTTGCTACTTCAATCAT
GAAGGAAACAAGCAGGGTTTTGGATGGAGTCGAAGCTGGTCACCATGGTTCAACCGCCATGGAT
ATACTGGAGGAAGCTGGCACAAGTGTGGCTAGGATTGCCAGCGAGATCCCTCAGGCTACCAGAG
ATATCACCAGAGACCTGGAAGCCCTTGAGCAGCACATGAATGCCCTCAGTCTGGTCAGAGCCAA
CCCTCGCCTAGAAGAAGATGCCAGGGCCCTCATCAATGCAGGTAGCATCCCTGCCCAACGGGCT
AAACAGGTGCGGGCCAGTCTGAAAGGAACCCCTCTGGCAATGAGCAAGGAAGACCGGATCCGCA
GTGCCACCACCACTGGGGTCACCCTCTTGCGTGATGTGGGGAGCCTTGTGAACGAGTCGAAGCA
GTTGTACGAAGGGTCTGCTTCCGAATCGGCAGCAGCACTAAGGAAGCTGGCTCAGGAGCTGGAG
GAGAAGCTAGGGGAGCTCATGAAATTCTACGAGACAATCTGATCAGGTTCCAGCCAGTCACCCC
ATCCCCAAGACATGCAGACATCAGGGGAGAGGATCTGGACAGAGGTAGGGACCATGGAGGTGCT
GTTAGAAGGAGAGCAAGACTACAGTCAGGTCCGAGGGACATAGTGTGGAGGCCTGTTGATGAAC
ACAGCAGGTTAGAGGATGGAGCAGTGGATCAAGTGAGATCCACTGGAGCCTGAGACGAGGGACC
AGAGGATGTGCTGCAAGAGGGACTGGGAAAATTGAAATCTAGACTAAACATGGAAAAAAGGCAG
TTTCGAAAGACTAGAAAACCCTCCCCATCTGAGCCATTGGAAACCCCACAAAACACAAACCAGA
GAGAAAAGTGTGTGCTCTCTAAACAAGTCGTGGCCCCCAGTTCCCCAGCCCACTCCCACCCTCA
GGGGTGGCATCAAATAAATTGTTTCCATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008765642 ⟹ XP_008763864

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	111,021,452 - 111,030,338 (-)	NCBI
mRatBN7.2	7	109,140,871 - 109,142,627 (-)	NCBI
Rnor_6.0	7	118,927,013 - 118,928,870 (-)	NCBI

Sequence:

show sequence

ATCTCCAGAACATGGCAAGCCGTGGATACCTGCATCACCTGCTGACTGCAGAGGGAGCCTGGGA
GGAGTTTGTATCAAAGGCCAAGTTGCCCAGGTCACTGCTATGGGATGCCCCAACACTTCCTCTA
ATCTCTACATGACTGGTTCTCTCAGGACAAGCATAACCACTCCAGCCAGTCCCAATTGGTGGCC
TCTGGGAAATATTCTAACACGTAGGGATAGGGCAGTGGCCCTCCACAAAGCACTGAGGGATCTG
ACAGCACTCTTGGCCATAGCAGAAAGAGGCAGATCTCGGAAAGGCTGGAAAGGCAAGGAGAAGT
TTGTGAAAGCATTTCCTTGCTTGAAAGCAGACTTGGAGGAGCACATCAGCCAGCTCTATGCCCT
AGCCGACCATGCTGAGGAACTGCACAGGGGCTGCACCGTCTCCAACATGGTGGCTGACTCCTTC
AGTGTTGCCTCCGACATCCTGAACCTCTTTGGTCTCTTTCTGGCACCTGAGTCAGCAGAGGGAA
GTCTGGTGCTCTCGGCAGCAGGCTTGGGGCTGGGGGTAGCAGCTACTGTGACTAATGTTGCTAC
TTCAATCATGAAGGAAACAAGCAGGGTTTTGGATGGAGTCGAAGCTGGTCACCATGGTTCAACC
GCCATGGATATACTGGAGGAAGCTGGCACAAGTGTGGCTAGGATTGCCAGCGAGATCCCTCAGG
CTACCAGAGATATCACCAGAGACCTGGAAGCCCTTGAGCAGCACATGAATGCCCTCAGTCTGGT
CAGAGCCAACCCTCGCCTAGAAGAAGATGCCAGGGCCCTCATCAATGCAGGTAGCATCCCTGCC
CAACGGGCTAAACAGGTGCGGGCCAGTCTGAAAGGAACCCCTCTGGCAATGAGCAAGGAAGACC
GGATCCGCAGTGCCACCACCACTGGGGTCACCCTCTTGCGTGATGTGGGGAGCCTTGTGAACGA
GTCGAAGCAGTTGTACGAAGGGTCTGCTTCCGAATCGGCAGCAGCACTAAGGAAGCTGGCTCAG
GAGCTGGAGGAGAAGCTAGGGGAGCTCATGAAATTCTACGAGACAATCTGATCAGGTTCCAGCC
AGTCACCCCATCCCCAAGACATGCAGACATCAGGGGAGAGGATCTGGACAGAGGTAGGGACCAT
GGAGGTGCTGTTAGAAGGAGAGCAAGACTACAGTCAGGTCCGAGGGACATAGTGTGGAGGCCTG
TTGATGAACACAGCAGGTTAGAGGATGGAGCAGTGGATCAAGTGAGATCCACTGGAGCCTGAGA
CGAGGGACCAGAGGATGTGCTGCAAGAGGGACTGGGAAAATTGAAATCTAGACTAAACATGGAA
AAAAGGCAGTTTCGAAAGACTAGAAAACCCTCCCCATCTGAGCCATTGGAAACCCCACAAAACA
CAAACCAGAGAGAAAAGTGTGTGCTCTCTAAACAAGTCGTGGCCCCCAGTTCCCCAGCCCACTC
CCACCCTCAGGGGTGGCATCAAATAAATTGTTTCCATTTCACCAA

hide sequence

RefSeq Acc Id:

XM_039079781 ⟹ XP_038935709

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	111,021,452 - 111,030,380 (-)	NCBI
mRatBN7.2	7	109,140,871 - 109,149,799 (-)	NCBI

RefSeq Acc Id:

XM_063264153 ⟹ XP_063120223

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	111,021,452 - 111,028,208 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020237	(Get FASTA)	NCBI Sequence Viewer
	XP_008763864	(Get FASTA)	NCBI Sequence Viewer
	XP_038935709	(Get FASTA)	NCBI Sequence Viewer
	XP_063120223	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83768	(Get FASTA)	NCBI Sequence Viewer
	EDM15913	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000036679
	ENSRNOP00000036679.3

RefSeq Acc Id:

NP_001020237 ⟸ NM_001025066

- UniProtKB:

Q5XIB6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASRGYLHHLLTAEGAWEEFVSKAKLPRDRAVALHKALRDLTALLAIAERGRSRKGWKGKEKFV
KAFPCLKADLEEHISQLYALADHAEELHRGCTVSNMVADSFSVASDILNLFGLFLAPESAEGSL
VLSAAGLGLGVAATVTNVATSIMKETSRVLDGVEAGHHGSTAMDILEEAGTSVARIASEIPQAT
RDITRDLEALEQHMNALSLVRANPRLEEDARALINAGSIPAQRAKQVRASLKGTPLAMSKEDRI
RSATTTGVTLLRDVGSLVNESKQLYEGSASESAAALRKLAQELEEKLGELMKFYETI

hide sequence

RefSeq Acc Id:

XP_008763864 ⟸ XM_008765642

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGCPNTSSNLYMTGSLRTSITTPASPNWWPLGNILTRRDRAVALHKALRDLTALLAIAERGRSR
KGWKGKEKFVKAFPCLKADLEEHISQLYALADHAEELHRGCTVSNMVADSFSVASDILNLFGLF
LAPESAEGSLVLSAAGLGLGVAATVTNVATSIMKETSRVLDGVEAGHHGSTAMDILEEAGTSVA
RIASEIPQATRDITRDLEALEQHMNALSLVRANPRLEEDARALINAGSIPAQRAKQVRASLKGT
PLAMSKEDRIRSATTTGVTLLRDVGSLVNESKQLYEGSASESAAALRKLAQELEEKLGELMKFY
ETI

hide sequence

RefSeq Acc Id:

ENSRNOP00000036679 ⟸ ENSRNOT00000031951

RefSeq Acc Id:	XP_038935709 ⟸ XM_039079781
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIB6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120223 ⟸ XM_063264153
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIB6-F1-model_v2	AlphaFold	Q5XIB6	1-313	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695452

Promoter ID:

EPDNEW_R5976

Type:

multiple initiation site

Name:

Apol9a_1

Description:

apolipoprotein L 9a

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	118,933,795 - 118,933,855	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562332	AgrOrtholog
BioCyc Gene	G2FUF-32881	BioCyc
Ensembl Genes	ENSRNOG00000023410	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000031951	ENTREZGENE
	ENSRNOT00000031951.5	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7193209	IMAGE-MGC_LOAD
InterPro	ApoL	UniProtKB/TrEMBL
KEGG Report	rno:503164	UniProtKB/TrEMBL
MGC_CLONE	MGC:94714	IMAGE-MGC_LOAD
NCBI Gene	503164	ENTREZGENE
PANTHER	ApoL	UniProtKB/TrEMBL
	APOL9A PROTEIN-RELATED	UniProtKB/TrEMBL
Pfam	ApoL	UniProtKB/TrEMBL
PhenoGen	Apol9a	PhenoGen
RatGTEx	ENSRNOG00000023410	RatGTEx
UniProt	Q5XIB6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-03-29	Apol9a	apolipoprotein L9a	Apol9a	apolipoprotein L 9a	Name changed	629549	APPROVED
2008-03-17	Apol9a	apolipoprotein L 9a	LOC503164	hypothetical protein LOC503164	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC503164	hypothetical protein LOC503164			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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