Vta1-ps1 (vesicle trafficking 1, pseudogene 1) - Rat Genome Database

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Gene: Vta1-ps1 (vesicle trafficking 1, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Vta1-ps1
Name: vesicle trafficking 1, pseudogene 1
RGD ID: 1562187
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC288211; RGD1562187; similar to RIKEN cDNA 1110059P08
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81153,082,439 - 53,083,362 (+)NCBIGRCr8
mRatBN7.21139,613,148 - 39,614,071 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01141,720,714 - 41,721,637 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01144,922,936 - 44,923,859 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41140,404,038 - 40,404,961 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1139,463,315 - 39,464,238 (+)NCBICelera
Cytogenetic Map11q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Vta1-ps1
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat

Markers in Region
AU040813  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21139,614,065 - 39,614,145 (+)MAPPERmRatBN7.2
Rnor_6.01141,721,632 - 41,721,711NCBIRnor6.0
Rnor_5.01144,923,854 - 44,923,933UniSTSRnor5.0
RGSC_v3.41140,404,956 - 40,405,035UniSTSRGSC3.4
Celera1139,464,233 - 39,464,312UniSTS
Cytogenetic Map11q12UniSTS


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-21632 BioCyc
NCBI Gene 288211 ENTREZGENE
PhenoGen Vta1-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Vta1-ps1  vesicle trafficking 1, pseudogene 1  RGD1562187  similar to RIKEN cDNA 1110059P08  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1562187  similar to RIKEN cDNA 1110059P08   RGD1562187_predicted  similar to RIKEN cDNA 1110059P08 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562187_predicted  similar to RIKEN cDNA 1110059P08 (predicted)  LOC288211  similar to RIKEN cDNA 1110059P08  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC288211  similar to RIKEN cDNA 1110059P08      Symbol and Name status set to provisional 70820 PROVISIONAL