Rpl9-ps20 (ribosomal protein L9, pseudogene 20) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rpl9-ps20 (ribosomal protein L9, pseudogene 20) Rattus norvegicus
Analyze
Symbol: Rpl9-ps20
Name: ribosomal protein L9, pseudogene 20
RGD ID: 1561987
Description: Predicted to enable rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex; INTERACTS WITH ammonium chloride; cocaine.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: ENSRNOG00000068097; LOC365553; RGD1561987; similar to 60S ribosomal protein L9
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82013,750,665 - 13,751,646 (+)NCBIGRCr8
mRatBN7.22013,751,294 - 13,753,402 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2013,751,279 - 13,752,645 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl2013,751,279 - 13,752,645 (+)NCBImRatBN7.2 Ensembl
Rnor_6.02014,700,903 - 14,701,718 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02016,885,539 - 16,886,414 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42014,255,804 - 14,256,372 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2015,230,133 - 15,230,948 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl9-ps20
23 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20669170617489458Rat
1581577Pur15Proteinuria QTL 154.380.0002urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)20804241017617956Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000117807   ⟹   ENSRNOP00000082276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2013,751,279 - 13,752,645 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000082276.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000082276   ⟸   ENSRNOT00000117807
Protein Domains
Large ribosomal subunit protein uL6 alpha-beta

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-4099 BioCyc
Ensembl Genes ENSRNOG00000068097 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000117807.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.930.12 UniProtKB/TrEMBL
InterPro Ribosomal_L6 UniProtKB/TrEMBL
  Ribosomal_L6_a/b-dom UniProtKB/TrEMBL
  Ribosomal_L6_a/b-dom_sf UniProtKB/TrEMBL
NCBI Gene 365553 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L9 UniProtKB/TrEMBL
  PTHR11655 UniProtKB/TrEMBL
Pfam Ribosomal_L6 UniProtKB/TrEMBL
PhenoGen Rpl9-ps20 PhenoGen
RatGTEx ENSRNOG00000068097 RatGTEx
Superfamily-SCOP SSF56053 UniProtKB/TrEMBL
UniProt A0A8I5ZUM9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Rpl9-ps20  ribosomal protein L9, pseudogene 20  RGD1561987  similar to 60S ribosomal protein L9  Symbol and Name Changed 1299863 APPROVED
2022-06-02 RGD1561987  similar to 60S ribosomal protein L9  ENSRNOG00000068097    Data merged from RGD:150345622 737654 PROVISIONAL
2021-08-31 ENSRNOG00000068097        Symbol and Name status set to provisional 45752 PROVISIONAL
2008-04-30 RGD1561987  similar to 60S ribosomal protein L9   RGD1561987_predicted  similar to 60S ribosomal protein L9 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561987_predicted  similar to 60S ribosomal protein L9 (predicted)  LOC365553  similar to 60S ribosomal protein L9  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC365553  similar to 60S ribosomal protein L9      Symbol and Name status set to provisional 70820 PROVISIONAL