Lsm6 (LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated) - Rat Genome Database

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Gene: Lsm6 (LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated) Rattus norvegicus
Analyze
Symbol: Lsm6
Name: LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
RGD ID: 1561937
Description: Predicted to enable RNA binding activity and protein heterodimerization activity. Predicted to be involved in mRNA splicing, via spliceosome and maturation of SSU-rRNA. Predicted to act upstream of or within mRNA catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of several cellular components, including Lsm2-8 complex; U2-type precatalytic spliceosome; and spliceosomal snRNP complex. Predicted to be active in P-body and nucleolus. Orthologous to human LSM6 (LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated); PARTICIPATES IN spliceosome pathway; RNA degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC100361202; LOC498934; LSM6 homolog, U6 small nuclear RNA associated; LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae); LSM6 U6 small nuclear RNA and mRNA degradation associated; rCG63582-like; RGD1561937; similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F); Sm protein F; U6 snRNA-associated Sm-like protein LSm6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81946,002,592 - 46,017,152 (+)NCBIGRCr8
mRatBN7.21929,098,254 - 29,112,858 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1929,098,214 - 29,118,682 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1342,114,032 - 42,116,484 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1935,946,240 - 35,960,800 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01936,600,115 - 36,614,675 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01938,843,175 - 38,857,716 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01932,770,640 - 32,785,215 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01943,665,152 - 43,679,724 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41930,877,859 - 30,893,927 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1928,598,125 - 28,612,685 (+)NCBICelera
Cytogenetic Map19q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors. Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. The spliceosome: design principles of a dynamic RNP machine. Wahl MC, etal., Cell. 2009 Feb 20;136(4):701-18. doi: 10.1016/j.cell.2009.02.009.
Additional References at PubMed
PMID:10523320   PMID:12515382   PMID:22681889   PMID:23376485   PMID:26912367   PMID:28781166  


Genomics

Comparative Map Data
Lsm6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81946,002,592 - 46,017,152 (+)NCBIGRCr8
mRatBN7.21929,098,254 - 29,112,858 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1929,098,214 - 29,118,682 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1342,114,032 - 42,116,484 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1935,946,240 - 35,960,800 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01936,600,115 - 36,614,675 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01938,843,175 - 38,857,716 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01932,770,640 - 32,785,215 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01943,665,152 - 43,679,724 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41930,877,859 - 30,893,927 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1928,598,125 - 28,612,685 (+)NCBICelera
Cytogenetic Map19q11NCBI
LSM6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384146,175,718 - 146,191,535 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4146,175,703 - 146,200,000 (+)EnsemblGRCh38hg38GRCh38
GRCh374147,096,870 - 147,112,687 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364147,316,285 - 147,330,663 (+)NCBINCBI36Build 36hg18NCBI36
Build 344147,454,497 - 147,468,667NCBI
Celera4144,416,300 - 144,430,678 (+)NCBICelera
Cytogenetic Map4q31.22NCBI
HuRef4142,817,650 - 142,832,028 (+)NCBIHuRef
CHM1_14147,074,141 - 147,088,500 (+)NCBICHM1_1
T2T-CHM13v2.04149,491,695 - 149,507,512 (+)NCBIT2T-CHM13v2.0
Lsm6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39879,531,497 - 79,547,781 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl879,531,494 - 79,547,769 (-)EnsemblGRCm39 Ensembl
GRCm38878,804,868 - 78,821,152 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl878,804,865 - 78,821,140 (-)EnsemblGRCm38mm10GRCm38
MGSCv37881,330,350 - 81,345,039 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36881,702,523 - 81,717,212 (-)NCBIMGSCv36mm8
Celera883,083,304 - 83,097,994 (-)NCBICelera
Cytogenetic Map8C1NCBI
cM Map837.22NCBI
Lsm6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554281,930,937 - 1,946,246 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554281,931,684 - 1,944,445 (+)NCBIChiLan1.0ChiLan1.0
LSM6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23144,047,639 - 144,061,905 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14144,412,620 - 144,426,868 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04138,514,194 - 138,528,575 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14150,171,597 - 150,185,947 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4150,171,648 - 150,185,947 (+)Ensemblpanpan1.1panPan2
LSM6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11544,651,830 - 44,666,418 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1544,651,830 - 44,666,418 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1545,043,731 - 45,058,334 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01545,319,664 - 45,334,283 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11544,592,534 - 44,607,122 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01544,679,838 - 44,694,455 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01544,951,146 - 44,965,770 (+)NCBIUU_Cfam_GSD_1.0
Lsm6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530145,652,443 - 45,666,038 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365353,089,779 - 3,103,310 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365353,089,778 - 3,103,342 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LSM6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl882,409,174 - 82,428,426 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1882,409,170 - 82,428,501 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2887,708,378 - 87,727,495 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LSM6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1792,719,482 - 92,734,351 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl792,719,503 - 92,735,321 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603772,400,288 - 72,414,999 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lsm6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248535,044,909 - 5,059,136 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248535,044,893 - 5,082,578 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lsm6
57 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:342
Count of miRNA genes:207
Interacting mature miRNAs:259
Transcripts:ENSRNOT00000050289, ENSRNOT00000071471
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)191392640130303727Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
61328Eae8Experimental allergic encephalomyelitis QTL 84nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)192481604133061905Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat

Markers in Region
RH132403  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21929,112,012 - 29,112,226 (+)MAPPERmRatBN7.2
Rnor_6.01932,784,370 - 32,784,583NCBIRnor6.0
Rnor_5.01943,678,879 - 43,679,092UniSTSRnor5.0
RGSC_v3.41930,878,491 - 30,878,704UniSTSRGSC3.4
Celera1928,611,840 - 28,612,053UniSTS
RH 3.4 Map19179.17UniSTS
Cytogenetic Map19q11UniSTS
RH133869  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19q11UniSTS
UniSTS:235937  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21929,112,453 - 29,112,664 (+)MAPPERmRatBN7.2
Rnor_6.01932,784,811 - 32,785,021NCBIRnor6.0
Rnor_5.01943,679,320 - 43,679,530UniSTSRnor5.0
RGSC_v3.41930,878,053 - 30,878,263UniSTSRGSC3.4
Celera1928,612,281 - 28,612,491UniSTS
Cytogenetic Map19q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 12 6 6 1 6 48 16 27 1
Low 4 54 71 55 21 55 8 14 64 38 40 13 8
Below cutoff 12 15 12 3 12 22 10 9 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000050289   ⟹   ENSRNOP00000050933
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1342,114,032 - 42,116,484 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000071471   ⟹   ENSRNOP00000066203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1929,098,319 - 29,114,717 (+)Ensembl
Rnor_6.0 Ensembl1932,770,655 - 32,785,215 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099593
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1929,098,214 - 29,118,682 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1929,098,214 - 29,118,682 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1929,098,576 - 29,118,682 (+)Ensembl
RefSeq Acc Id: NM_001126085   ⟹   NP_001119557
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81946,002,592 - 46,017,152 (+)NCBI
mRatBN7.21929,098,297 - 29,112,858 (+)NCBI
Rnor_6.01932,770,655 - 32,785,215 (+)NCBI
Rnor_5.01943,665,152 - 43,679,724 (+)NCBI
RGSC_v3.41930,877,859 - 30,893,927 (-)RGD
Celera1928,598,125 - 28,612,685 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255408   ⟹   XP_006255470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81946,002,649 - 46,015,723 (+)NCBI
mRatBN7.21929,098,257 - 29,112,346 (+)NCBI
Rnor_6.01932,770,640 - 32,784,703 (+)NCBI
Rnor_5.01943,665,152 - 43,679,724 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001119557 (Get FASTA)   NCBI Sequence Viewer  
  XP_006255470 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL92319 (Get FASTA)   NCBI Sequence Viewer  
  EDL92320 (Get FASTA)   NCBI Sequence Viewer  
  EDL92321 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000050933.3
Reference Protein Sequences
RefSeq Acc Id: NP_001119557   ⟸   NM_001126085
- UniProtKB: D3ZG07 (UniProtKB/TrEMBL),   A6IYJ3 (UniProtKB/TrEMBL),   A6IBZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255470   ⟸   XM_006255408
- Peptide Label: isoform X1
- UniProtKB: D3ZG07 (UniProtKB/TrEMBL),   A6IYJ3 (UniProtKB/TrEMBL),   A6IBZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000066203   ⟸   ENSRNOT00000071471
RefSeq Acc Id: ENSRNOP00000050933   ⟸   ENSRNOT00000050289
Protein Domains
Sm

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZG07-F1-model_v2 AlphaFold D3ZG07 1-80 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701054
Promoter ID:EPDNEW_R11577
Type:initiation region
Name:Lsm6_1
Description:LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01932,770,685 - 32,770,745EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561937 AgrOrtholog
BioCyc Gene G2FUF-5935 BioCyc
Ensembl Genes ENSRNOG00000030374 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000049370 Ensembl
  ENSRNOG00000066480 Ensembl
Ensembl Transcript ENSRNOT00000050289.6 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro IPR047575 UniProtKB/TrEMBL
  Lsm6/sSmF UniProtKB/TrEMBL
  LSM_domain UniProtKB/TrEMBL
  LSM_related_domain UniProtKB/TrEMBL
KEGG Report rno:100360750 UniProtKB/TrEMBL
  rno:498934 UniProtKB/TrEMBL
NCBI Gene 498934 ENTREZGENE
PANTHER PTHR11021 UniProtKB/TrEMBL
  U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM6 UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PhenoGen Lsm6 PhenoGen
PIRSF snRNP_SmF UniProtKB/TrEMBL
PROSITE PS52002 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030374 RatGTEx
  ENSRNOG00000049370 RatGTEx
  ENSRNOG00000066480 RatGTEx
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP Sm_like_riboprot UniProtKB/TrEMBL
UniProt A6IBZ0 ENTREZGENE, UniProtKB/TrEMBL
  A6IYJ3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZG07 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Lsm6  LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated  LOC100361202  rCG63582-like  Data merged from RGD:2320561 737654 PROVISIONAL
2015-07-09 Lsm6  LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated  Lsm6  LSM6 U6 small nuclear RNA and mRNA degradation associated  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-01 Lsm6  LSM6 U6 small nuclear RNA and mRNA degradation associated  Lsm6  LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-05 LOC100361202  rCG63582-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-02-29 Lsm6  LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)  RGD1561937_predicted  similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F) (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 RGD1561937_predicted  similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F) (predicted)  LOC684624  similar to U6 snRNA-associated Sm-like protein LSm6  Data merged from RGD:1587948 1643240 APPROVED
2006-11-19 LOC684624  similar to U6 snRNA-associated Sm-like protein LSm6      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1561937_predicted  similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F) (predicted)  LOC498934  similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498934  similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F)      Symbol and Name status set to provisional 70820 PROVISIONAL