Rps18l2 (ribosomal protein S18 like 2) - Rat Genome Database

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Gene: Rps18l2 (ribosomal protein S18 like 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps18l2 (Ensembl: RGD1561919)
Name: ribosomal protein S18 like 2 (Ensembl:similar to ribosomal protein S18)
RGD ID: 1561919
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation; INTERACTS WITH indole-3-methanol; rotenone.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S18-like; LOC307665; RGD1561919; ribosomal protein S18-like; similar to ribosomal protein S18; small ribosomal subunit protein uS13-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81913,112,901 - 13,113,399 (+)NCBIGRCr8
mRatBN7.21913,107,145 - 13,107,646 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1913,107,145 - 13,107,603 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01914,093,225 - 14,093,723 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01925,205,940 - 25,206,438 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41913,615,405 - 13,615,905 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1912,971,190 - 12,980,562 (+)NCBICelera
Cytogenetic Map19p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rps18l2
12 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:118
Interacting mature miRNAs:124
Transcripts:ENSRNOT00000047417
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032318023069265Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_039098133   ⟹   XP_038954061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81913,112,901 - 13,113,399 (+)NCBI
mRatBN7.21913,107,145 - 13,107,646 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038954061 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000040056
  ENSRNOP00000040056.2
Reference Protein Sequences
RefSeq Acc Id: XP_038954061   ⟸   XM_039098133
- UniProtKB: D3ZAU6 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZAU6-F1-model_v2 AlphaFold D3ZAU6 1-152 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561919 AgrOrtholog
BioCyc Gene G2FUF-6439 BioCyc
Ensembl Genes ENSRNOG00000033451 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047417.4 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.50 UniProtKB/TrEMBL
  4.10.910.10 UniProtKB/TrEMBL
InterPro 30s_Rbsml_prot_S13_C UniProtKB/TrEMBL
  Ribosomal_S13 UniProtKB/TrEMBL
  Ribosomal_S13-like_H2TH UniProtKB/TrEMBL
NCBI Gene 307665 ENTREZGENE
PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 UniProtKB/TrEMBL
  40S RIBOSOMAL PROTEIN S18 UniProtKB/TrEMBL
Pfam Ribosomal_S13 UniProtKB/TrEMBL
PhenoGen Rps18l2 PhenoGen
PIRSF Ribosomal_S13 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S13_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000033451 RatGTEx
Superfamily-SCOP SSF46946 UniProtKB/TrEMBL
UniProt D3ZAU6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rps18l2  ribosomal protein S18 like 2  RGD1561919  similar to ribosomal protein S18  Symbol and Name Changed 1299863 APPROVED
2013-05-24 RGD1561919  similar to ribosomal protein S18  LOC100363954  ribosomal protein S18-like  Data merged from RGD:2322003 1643240 APPROVED
2010-05-06 LOC100363954  ribosomal protein S18-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1561919  similar to ribosomal protein S18   RGD1561919_predicted  similar to ribosomal protein S18 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561919_predicted  similar to ribosomal protein S18 (predicted)  LOC307665  similar to ribosomal protein S18  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC307665  similar to ribosomal protein S18      Symbol and Name status set to provisional 70820 PROVISIONAL