Kmt5al3 (lysine methyltransferase 5A like 3) - Rat Genome Database

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Gene: Kmt5al3 (lysine methyltransferase 5A like 3) Rattus norvegicus
Analyze
Symbol: Kmt5al3
Name: lysine methyltransferase 5A like 3
RGD ID: 1561853
Description: PARTICIPATES IN lysine degradation pathway; INTERACTS WITH 17beta-estradiol; bisphenol A
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC288346; N-lysine methyltransferase KMT5A-like; RGD1561853; similar to SET domain-containing protein
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81116,925,044 - 16,927,264 (-)NCBIGRCr8
mRatBN7.2113,478,565 - 3,482,255 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0112,812,733 - 2,815,779 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0112,793,898 - 2,797,584 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4113,143,996 - 3,146,840 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera113,453,990 - 3,456,940 (-)NCBICelera
Cytogenetic Map11p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Kmt5al3
25 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:31
Count of miRNA genes:29
Interacting mature miRNAs:29
Transcripts:ENSRNOT00000070883
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_039088746   ⟹   XP_038944674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81116,925,044 - 16,927,264 (-)NCBI
mRatBN7.2113,478,565 - 3,482,255 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038944674 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_038944674   ⟸   XM_039088746


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22306 BioCyc
NCBI Gene 288346 ENTREZGENE
PhenoGen Kmt5al3 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Kmt5al3  lysine methyltransferase 5A like 3  RGD1561853  similar to SET domain-containing protein  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1561853  similar to SET domain-containing protein   RGD1561853_predicted  similar to SET domain-containing protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561853_predicted  similar to SET domain-containing protein (predicted)  LOC288346  similar to SET domain-containing protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC288346  similar to SET domain-containing protein      Symbol and Name status set to provisional 70820 PROVISIONAL