Rpl23a-ps6 (ribosomal protein L23a, pseudogene 6) - Rat Genome Database

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Gene: Rpl23a-ps6 (ribosomal protein L23a, pseudogene 6) Rattus norvegicus
Analyze
Symbol: Rpl23a-ps6
Name: ribosomal protein L23a, pseudogene 6
RGD ID: 1561843
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC308263; RGD1561843; similar to 60S ribosomal protein L23a
Related Functional Gene: Rpl23a  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813,874,949 - 3,875,451 (-)NCBIGRCr8
mRatBN7.212,054,552 - 2,055,054 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx11,704,364 - 1,704,866 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.017,704,751 - 7,705,253 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.011,986,454 - 1,986,956 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.011,677,753 - 1,678,254 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.013,375,748 - 3,376,095 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.412,231,299 - 2,231,646 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1602,874 - 603,376 (-)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl23a-ps6
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_002725453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1602,927 - 603,381 (-)RGD
RefSeq Acc Id: XM_218061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.412,231,299 - 2,231,646 (-)RGD

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62455 BioCyc
NCBI Gene 308263 ENTREZGENE
PhenoGen Rpl23a-ps6 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Rpl23a-ps6  ribosomal protein L23a, pseudogene 6  RGD1561843  similar to 60S ribosomal protein L23a  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1561843  similar to 60S ribosomal protein L23a   RGD1561843_predicted  similar to 60S ribosomal protein L23a (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561843_predicted  similar to 60S ribosomal protein L23a (predicted)  LOC308263  similar to 60S ribosomal protein L23a  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC308263  similar to 60S ribosomal protein L23a      Symbol and Name status set to provisional 70820 PROVISIONAL