Mef2b (myocyte enhancer factor 2B) - Rat Genome Database

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Gene: Mef2b (myocyte enhancer factor 2B) Rattus norvegicus
Analyze
Symbol: Mef2b
Name: myocyte enhancer factor 2B
RGD ID: 1561733
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and histone deacetylase binding activity. Predicted to be involved in cell differentiation; heart development; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of DNA-templated transcription. Predicted to be located in cell junction; cytosol; and nucleoplasm. Predicted to be part of transcription regulator complex. Orthologous to several human genes including MEF2B (myocyte enhancer factor 2B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC498607; myocyte-specific enhancer factor 2B; similar to Myocyte-specific enhancer factor 2B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81619,286,951 - 19,305,547 (-)NCBIGRCr8
mRatBN7.21619,253,008 - 19,269,514 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,253,010 - 19,268,967 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1619,292,723 - 19,308,716 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01620,424,876 - 20,440,856 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01619,345,680 - 19,361,675 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01621,001,204 - 21,017,651 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1621,001,206 - 21,017,163 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,851,148 - 20,867,386 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,736,015 - 19,752,301 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1619,441,650 - 19,457,610 (-)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Control of the SOST bone enhancer by PTH using MEF2 transcription factors. Leupin O, etal., J Bone Miner Res. 2007 Dec;22(12):1957-67.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:7760790   PMID:8668199   PMID:9443808   PMID:12130539   PMID:15567413   PMID:17158926   PMID:25550204  


Genomics

Comparative Map Data
Mef2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81619,286,951 - 19,305,547 (-)NCBIGRCr8
mRatBN7.21619,253,008 - 19,269,514 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,253,010 - 19,268,967 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1619,292,723 - 19,308,716 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01620,424,876 - 20,440,856 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01619,345,680 - 19,361,675 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01621,001,204 - 21,017,651 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1621,001,206 - 21,017,163 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,851,148 - 20,867,386 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,736,015 - 19,752,301 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1619,441,650 - 19,457,610 (-)NCBICelera
Cytogenetic Map16p14NCBI
MEF2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381919,145,567 - 19,170,263 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1919,145,567 - 19,192,131 (-)EnsemblGRCh38hg38GRCh38
GRCh371919,256,376 - 19,281,072 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361919,256,376 - 19,281,098 (-)NCBINCBI36Build 36hg18NCBI36
Build 341919,117,377 - 19,163,933NCBI
Celera1919,161,210 - 19,185,929 (-)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1918,820,880 - 18,844,909 (-)NCBIHuRef
CHM1_11919,256,090 - 19,281,608 (-)NCBICHM1_1
T2T-CHM13v2.01919,282,103 - 19,306,796 (-)NCBIT2T-CHM13v2.0
Mef2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,605,411 - 70,620,138 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl870,592,361 - 70,620,138 (+)EnsemblGRCm39 Ensembl
GRCm38870,152,761 - 70,167,488 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,139,711 - 70,167,488 (+)EnsemblGRCm38mm10GRCm38
MGSCv37872,676,677 - 72,691,387 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,068,698 - 73,096,477 (+)NCBIMGSCv36mm8
Celera872,708,243 - 72,722,925 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.15NCBI
Mef2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555242,661,278 - 2,664,084 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555242,649,413 - 2,664,173 (+)NCBIChiLan1.0ChiLan1.0
MEF2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22024,007,999 - 24,048,146 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11923,014,145 - 23,039,301 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01918,583,770 - 18,609,757 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11919,585,920 - 19,610,256 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1919,585,920 - 19,610,256 (-)Ensemblpanpan1.1panPan2
MEF2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12044,000,253 - 44,017,371 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2043,991,438 - 44,017,368 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2043,930,443 - 43,933,720 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02044,501,475 - 44,504,752 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2044,500,868 - 44,505,525 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12043,738,849 - 43,742,126 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02044,148,335 - 44,151,612 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02044,423,695 - 44,426,972 (+)NCBIUU_Cfam_GSD_1.0
Mef2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118202,697,607 - 202,716,820 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365962,246,968 - 2,266,036 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365962,261,726 - 2,265,893 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEF2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl258,695,691 - 58,722,557 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1258,699,173 - 58,722,554 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1

Variants

.
Variants in Mef2b
79 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:64
Interacting mature miRNAs:68
Transcripts:ENSRNOT00000027661
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 1 1
Low 12 21 12 18 12 1 9 29 29 11
Below cutoff 1 31 33 26 26 7 9 57 6 11 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000027661   ⟹   ENSRNOP00000027661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1619,253,010 - 19,268,967 (-)Ensembl
Rnor_6.0 Ensembl1621,001,206 - 21,017,163 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114985   ⟹   ENSRNOP00000085756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1619,253,614 - 19,268,967 (-)Ensembl
RefSeq Acc Id: NM_001017507   ⟹   NP_001017507
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,286,951 - 19,302,910 (-)NCBI
mRatBN7.21619,253,008 - 19,268,967 (-)NCBI
Rnor_6.01621,001,204 - 21,017,163 (-)NCBI
Rnor_5.01620,851,148 - 20,867,386 (-)NCBI
RGSC_v3.41619,736,015 - 19,752,301 (-)RGD
Celera1619,441,650 - 19,457,610 (-)RGD
Sequence:
RefSeq Acc Id: XM_006252927   ⟹   XP_006252989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,286,951 - 19,305,547 (-)NCBI
mRatBN7.21619,253,013 - 19,269,514 (-)NCBI
Rnor_6.01621,001,212 - 21,017,651 (-)NCBI
Rnor_5.01620,851,148 - 20,867,386 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063275642   ⟹   XP_063131712
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,286,951 - 19,289,257 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001017507   ⟸   NM_001017507
- UniProtKB: Q6AXR7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252989   ⟸   XM_006252927
- Peptide Label: isoform X1
- UniProtKB: Q6AXR7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000027661   ⟸   ENSRNOT00000027661
RefSeq Acc Id: ENSRNOP00000085756   ⟸   ENSRNOT00000114985
RefSeq Acc Id: XP_063131712   ⟸   XM_063275642
- Peptide Label: isoform X2
Protein Domains
MADS-box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AXR7-F1-model_v2 AlphaFold Q6AXR7 1-348 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700042
Promoter ID:EPDNEW_R10566
Type:single initiation site
Name:Mef2b_1
Description:myocyte enhancer factor 2B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01621,017,173 - 21,017,233EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561733 AgrOrtholog
BioCyc Gene G2FUF-11760 BioCyc
Ensembl Genes ENSRNOG00000020400 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027661.5 UniProtKB/TrEMBL
  ENSRNOT00000114985.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1810.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7109152 IMAGE-MGC_LOAD
InterPro MADS_MEF2-like UniProtKB/TrEMBL
  TF_MADSbox UniProtKB/TrEMBL
  TF_MADSbox_sf UniProtKB/TrEMBL
KEGG Report rno:498607 UniProtKB/TrEMBL
MGC_CLONE MGC:94839 IMAGE-MGC_LOAD
NCBI Gene 498607 ENTREZGENE
PANTHER MYOCYTE-SPECIFIC ENHANCER FACTOR 2A UniProtKB/TrEMBL
  SERUM RESPONSE FACTOR HOMOLOG UniProtKB/TrEMBL
Pfam SRF-TF UniProtKB/TrEMBL
PhenoGen Mef2b PhenoGen
PRINTS MADSDOMAIN UniProtKB/TrEMBL
PROSITE MADS_BOX_1 UniProtKB/TrEMBL
  MADS_BOX_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020400 RatGTEx
SMART MADS UniProtKB/TrEMBL
Superfamily-SCOP TF_MADSbox UniProtKB/TrEMBL
UniProt A0A8I6GDA6_RAT UniProtKB/TrEMBL
  F7EZT3_RAT UniProtKB/TrEMBL
  Q6AXR7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Mef2b  myocyte enhancer factor 2B  LOC498607  similar to Myocyte-specific enhancer factor 2B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC498607  similar to Myocyte-specific enhancer factor 2B      Symbol and Name status set to provisional 70820 PROVISIONAL