Cep70 (centrosomal protein 70) - Rat Genome Database

Name: Cep70
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cep70 (centrosomal protein 70) Rattus norvegicus

Analyze

Symbol:

Cep70

Name:

centrosomal protein 70

RGD ID:

1561486

Description:

Predicted to enable identical protein binding activity. Predicted to be involved in cilium assembly and regulation of microtubule cytoskeleton organization. Predicted to be located in cytoplasm. Predicted to be active in centrosome. Orthologous to human CEP70 (centrosomal protein 70); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

centrosomal protein 70kDa; centrosomal protein of 70 kDa; LOC367153; similar to p10-binding protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CEP70 (centrosomal protein 70)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cep70 (centrosomal protein 70)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cep70 (centrosomal protein 70)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CEP70 (centrosomal protein 70)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CEP70 (centrosomal protein 70)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC101959627 (centrosomal protein of 70 kDa)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CEP70 (centrosomal protein 70)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CEP70 (centrosomal protein 70)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cep70 (centrosomal protein 70)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Cep70 (centrosomal protein 70)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CEP70 (centrosomal protein 70)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cep70 (centrosomal protein 70)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	108,689,562 - 108,742,620 (+)	NCBI		GRCr8
mRatBN7.2	8	99,810,270 - 99,863,279 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	99,810,367 - 99,862,855 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	105,476,680 - 105,528,778 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	103,675,981 - 103,728,075 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	101,518,486 - 101,570,586 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	107,495,326 - 107,548,274 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	107,495,366 - 107,548,269 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	106,921,022 - 106,973,978 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	104,118,970 - 104,162,318 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	99,214,148 - 99,266,039 (+)	NCBI		Celera
Cytogenetic Map	8	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

orofacial cleft (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3-methylcholanthrene (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

clorgyline (ISO)

copper(II) sulfate (ISO)

cordycepin (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

epoxiconazole (ISO)

furan (EXP)

gentamycin (EXP)

inulin (ISO)

ketamine (EXP)

nickel atom (ISO)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

quercetin (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tetraphene (ISO)

thioacetamide (EXP)

topotecan (EXP)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (IEA)

regulation of microtubule cytoskeleton organization (IEA)

Cellular Component

centrosome (IBA,IEA,ISO)

cytoplasm (IEA)

Molecular Function

gamma-tubulin binding (IEA)

identical protein binding (IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:21399614	PMID:25416956	PMID:27107012

Genomics

Comparative Map Data

Cep70
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	108,689,562 - 108,742,620 (+)	NCBI		GRCr8
mRatBN7.2	8	99,810,270 - 99,863,279 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	99,810,367 - 99,862,855 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	105,476,680 - 105,528,778 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	103,675,981 - 103,728,075 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	101,518,486 - 101,570,586 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	107,495,326 - 107,548,274 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	107,495,366 - 107,548,269 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	106,921,022 - 106,973,978 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	104,118,970 - 104,162,318 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	99,214,148 - 99,266,039 (+)	NCBI		Celera
Cytogenetic Map	8	q31	NCBI

CEP70
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	138,494,344 - 138,594,260 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	138,494,344 - 138,594,538 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	138,213,186 - 138,313,102 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	139,695,876 - 139,795,819 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	136,638,100 - 136,738,061 (-)	NCBI		Celera
Cytogenetic Map	3	q22.3	NCBI
HuRef	3	135,587,913 - 135,687,890 (-)	NCBI		HuRef
CHM1_1	3	138,176,970 - 138,276,903 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	141,234,912 - 141,334,894 (-)	NCBI		T2T-CHM13v2.0

Cep70
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	99,065,640 - 99,205,569 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	99,125,420 - 99,182,457 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	99,183,584 - 99,325,879 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	99,243,367 - 99,300,404 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	99,143,887 - 99,200,823 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	99,052,800 - 99,109,756 (+)	NCBI		MGSCv36	mm8
Celera	9	98,783,432 - 98,833,932 (+)	NCBI		Celera
Cytogenetic Map	9	E3.3	NCBI
cM Map	9	51.45	NCBI

Cep70
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955501	417,866 - 548,645 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955501	478,920 - 533,104 (+)	NCBI	ChiLan1.0	ChiLan1.0

CEP70
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	136,367,497 - 136,502,225 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	136,373,151 - 136,506,953 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	135,525,035 - 135,625,533 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	142,974,134 - 143,229,079 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	142,974,810 - 143,228,835 (-)	Ensembl	panpan1.1		panPan2

CEP70
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	34,674,295 - 34,764,445 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	34,700,041 - 34,792,035 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	34,673,596 - 34,758,118 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	35,221,906 - 35,306,489 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	35,240,079 - 35,336,758 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	34,902,890 - 34,987,415 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	34,968,728 - 35,053,230 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	35,219,576 - 35,303,842 (-)	NCBI		UU_Cfam_GSD_1.0

LOC101959627
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	74,053,342 - 74,088,891 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936540	792,539 - 828,674 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CEP70
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	79,304,687 - 79,386,952 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	79,305,678 - 79,386,946 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	86,949,573 - 87,031,245 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CEP70
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	51,944,525 - 52,047,243 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	51,969,910 - 52,046,563 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	24,976,419 - 25,059,520 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cep70
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624730	15,048,836 - 15,106,760 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cep70
125 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	123
Count of miRNA genes:	96
Interacting mature miRNAs:	99
Transcripts:	ENSRNOT00000056590
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	46531639	119088626	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	8	46531639	119088626	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	8	46531639	119088626	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088626	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	51351728	107062046	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	54259986	100382532	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	61290298	119084929	Rat
631653	Bp125	Blood pressure QTL 125	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	66142385	111142385	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	69349194	112783834	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	70513503	118219066	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	71888757	116888757	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	71888757	116888757	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	71888757	116888757	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	71888757	116888757	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	73473045	118473045	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	76468691	121468691	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	82460758	122812818	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	89265192	114019816	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	93535351	123900184	Rat
1358893	Bp263	Blood pressure QTL 263	5.01		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
1358903	Bp252	Blood pressure QTL 252	7	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
738014	Anxrr15	Anxiety related response QTL 15	3.6	0.005	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	95718998	123900184	Rat
2300182	Bmd56	Bone mineral density QTL 56	5.4		femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	95718998	123900184	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		10	26	20	12	20			67	32	41	2
Low	3	33	31	21	7	21	8	9	7	3		9	8
Below cutoff								1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001017470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001428871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001428872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001428873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010054011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC141164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000056590 ⟹ ENSRNOP00000053430

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	99,810,367 - 99,862,855 (+)	Ensembl
Rnor_6.0 Ensembl	8	107,495,366 - 107,547,640 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000081029 ⟹ ENSRNOP00000072786

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	99,810,367 - 99,862,855 (+)	Ensembl
Rnor_6.0 Ensembl	8	107,499,262 - 107,548,269 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000081594 ⟹ ENSRNOP00000068907

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	99,823,355 - 99,862,855 (+)	Ensembl
Rnor_6.0 Ensembl	8	107,508,351 - 107,547,643 (+)	Ensembl

RefSeq Acc Id:

NM_001017470 ⟹ NP_001017470

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,689,707 - 108,741,995 (+)	NCBI
mRatBN7.2	8	99,810,367 - 99,862,654 (+)	NCBI
Rnor_6.0	8	107,495,366 - 107,547,649 (+)	NCBI
Rnor_5.0	8	106,921,022 - 106,973,978 (+)	NCBI
RGSC_v3.4	8	104,118,970 - 104,162,318 (+)	RGD
Celera	8	99,214,148 - 99,266,039 (+)	RGD

Sequence:

show sequence

TCTGAAACCTGTGGAAGATCAAGATCCAGTTTTGGACATGAGACTCGTTGGGTGATCATTTTAT
TGGGATTAACTTGAACCATCTATGTAAACTACAGAGGAATCGCTATGACTGAGGGAACTCAAGT
ATTTTTATTGCCGATCTCTACTTCAGATTCTACAAAAGAACCACTGTCCACAGTGACTTCTCAA
GCCCAGGATTCTAGCCTTTCAGCAAACAGACCCGTGACTGAAAAACAGCAGGAGGAAGCAGAAT
GGGAAAGCATCAGTAGGCTGTTGGTGACGCGTGGCTTTAAACCTTTGTGCCTAGTCAAAGGAGC
CAATCTCAGAGATTTCATCGTTTTTGACAAACAATCATCACAAAGAATGAGGCAGGCTTTCAAA
ACACTGATGGAAGAAACCACACGTCAGCAGAGCATGCTACAGGAGCTCATAGAGACAAACCATC
AGCTTAAAAGTGAACTTCAGCTAGAACAGAACCGAGCGGCACACCAGGAACAGCGAGCCAATGA
CCTTCAGCAGATCATGGACAGTGTGAAATCCAAAATTGGTGAATTAGAAGATGAATCGCTAAAC
AGGGTTTGCCAGGAACAAAATAGAATAAAAGACCTTCAAAAGGAATATAAAACGTTACAGATGA
AATGCCAGCATTATAAGAAAAAACAAATGGAGCAAGAAGAGACCATTGCTTCTTTGCAAAAGGA
GATCCGCAGATTTGCCAAAGAGGAAGAAGATCGTGTTATCACTCAAAAGAGACTGTTTACCCAT
CTCTGCCGAAGAGTTCCTCATTCAGTCTTGGATAAACAGCAGTGTGGGGAGGATGACAGCCAGT
CAGAAGGAAAAGACTATCTAAACCTGGGCGTCTCACCAACCTATAAAGGCCTTCTGACGTCGTT
ACAGAAGCAACTTGAGAAATCCAATTCCAAGATCGACGTGCTGTTGGGTGAAAAGCTGAACCTC
CAAAAAGATCTGGAAAACAGGCCCACAGAACATGAACTGAGACTTTATAAACAACAAGTGAAGA
AGCTGGAGAAAACCCTTAAGAAAAACATAAAATTACAAGATCTTATTGGTCAAAAAAAATCTGA
TGACATGGAGAAAAAGGATGAGCCCAGCAAAGACATCCACCAGCAGGCTCTGGTTGACCAGAGA
TACTTTCAGGTGCTGTGCAGCATCGATTCAATCGTTCATAGCCCACGAGCCCCAGGAGTCATTT
ACAAACAGAGCAAAGAAAGAGCCCAAAACCGTAGTAAAGATGCTGTTCAAGAGTGTGGATTCGA
ACATCTTGTTCCTGTAATAGAAATGTGGGCAGATGAACTGACATCCTTAAAGGATTTGTATAAG
TCCTTAAAAATACTGTCTGCAGAACTGATACCTTGGCATAATTTAAAGAAACCGAATGAAAATG
AAGGTGTCAAAGTAGGAGATCTGTTGTTAATGGTAGATACCATGTTGGAAGAAGTTGAAAACCA
GAAAGAGACCAGCAGCATGCCAAACTCTCAAACTTTGCAAGCTATTGTTTCTCACTTCCAAAAG
CTGTTTGATGTGCAGTCTTTAAATGGAGTCTATCCTCGAATGAATGAAGTGTACGCCAGGCTTG
GAGAAATGAACAACGCTGTAAGAAACCTTCAGGAGCTCCTGGGATTAGACAGTTCATCGTCATT
GTGTATGGTGGTCAGCACCGTTGGGAAGTTGTGTAAGATGATTAATGAAGATGTCAGTGAGCAG
ATTAAACGAGTGTTAGGACCTGAAGACCTACAAAGCATTATCAACAAATTGGAAGAGCATGAGG
AATTTTTTCCAGCATTTCAGGCTTTTACTAATGATCTTCTTGAAATCTTAGAAATTGATGACTT
GGATGCCATTGTACCTGCAGTAAAGAAATTAAAAGTGCTTTCATACTGAAAACAAAAAAAAAAA
AAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006243635 ⟹ XP_006243697

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,695,622 - 108,742,620 (+)	NCBI
mRatBN7.2	8	99,816,268 - 99,863,279 (+)	NCBI
Rnor_6.0	8	107,501,332 - 107,548,274 (+)	NCBI
Rnor_5.0	8	106,921,022 - 106,973,978 (+)	NCBI

Sequence:

show sequence

GTCAGCCTGGTTGCGCTAACGGACGCGTAGGCGGGGCTTAAGCCGCGGGGCGGGCGCGATTCTA
GCTACAAGCAGCGACTGAGATCAAGATCCAGTTTTGGACATGAGACTCGTTGGGTGATCATTTT
ATTGGGATTAACTTGAACCATCTATGTAAACTACAGAGGAATCGCTATGACTGAGGGAACTCAA
GTATTTTTATTGCCGATCTCTACTTCAGATTCTACAAAAGAACCACTGTCCACAGTGACTTCTC
AAGCCCAGGATTCTAGCCTTTCAGCAAACAGACCCGTGACTGAAAAACAGCAGGAGGAAGCAGA
ATGGGAAAGCATCAGTAGGCTGTTGGTGACGCGTGGCTTTAAACCTTTGTGCCTAGTCAAAGGA
GCCAATCTCAGAGATTTCATCGTTTTTGACAAACAATCATCACAAAGAATGAGGCAGGCTTTCA
AAACACTGATGGAAGAAACCACACGTCAGCAGAGCATGCTACAGGAGCTCATAGAGACAAACCA
TCAGCTTAAAAGTGAACTTCAGCTAGAACAGAACCGAGCGGCACACCAGGAACAGCGAGCCAAT
GACCTTCAGCAGATCATGGACAGTGTGAAATCCAAAATTGGTGAATTAGAAGATGAATCGCTAA
ACAGGGTTTGCCAGGAACAAAATAGAATAAAAGACCTTCAAAAGGAATATAAAACGTTACAGAT
GAAATGCCAGCATTATAAGAAAAAACAAATGGAGCAAGAAGAGACCATTGCTTCTTTGCAAAAG
GAGATCCGCAGATTTGCCAAAGAGGAAGAAGATCGTGTTATCACTCAAAAGAGACTGTTTACCC
ATCTCTGCCGAAGAGTTCCTCATTCAGTCTTGGATAAACAATTGCTTTGTCTAATTGATTACTA
TGAATGTAAACTTAGAAAACATCATATACAAAGGCAGTGTGGGGAGGATGACAGCCAGTCAGAA
GGAAAAGACTATCTAAACCTGGGCGTCTCACCAACCTATAAAGGCCTTCTGACGTCGTTACAGA
AGCAACTTGAGAAATCCAATTCCAAGATCGACGTGCTGTTGGGTGAAAAGCTGAACCTCCAAAA
AGATCTGGAAAACAGGCCCACAGAACATGAACTGAGACTTTATAAACAACAAGTGAAGAAGCTG
GAGAAAACCCTTAAGAAAAACATAAAATTACAAGATCTTATTGGTCAAAAAAAATCTGATGACA
TGGAGAAAAAGGATGAGCCCAGCAAAGACATCCACCAGCAGGCTCTGGTTGACCAGAGATACTT
TCAGGTGCTGTGCAGCATCGATTCAATCGTTCATAGCCCACGAGCCCCAGGAGTCATTTACAAA
CAGAGCAAAGAAAGAGCCCAAAACCGTAGTAAAGATGCTGTTCAAGAGTGTGGATTCGAACATC
TTGTTCCTGTAATAGAAATGTGGGCAGATGAACTGACATCCTTAAAGGATTTGTATAAGTCCTT
AAAAATACTGTCTGCAGAACTGATACCTTGGCATAATTTAAAGAAACCGAATGAAAATGAAGGT
GTCAAAGTAGGAGATCTGTTGTTAATGGTAGATACCATGTTGGAAGAAGTTGAAAACCAGAAAG
AGACCAGCAGCATGCCAAACTCTCAAACTTTGCAAGCTATTGTTTCTCACTTCCAAAAGCTGTT
TGATGTGCAGTCTTTAAATGGAGTCTATCCTCGAATGAATGAAGTGTACGCCAGGCTTGGAGAA
ATGAACAACGCTGTAAGAAACCTTCAGGAGCTCCTGGGATTAGACAGTTCATCGTCATTGTGTA
TGGTGGTCAGCACCGTTGGGAAGTTGTGTAAGATGATTAATGAAGATGTCAGTGAGCAGATTAA
ACGAGTGTTAGGACCTGAAGACCTACAAAGCATTATCAACAAATTGGAAGAGCATGAGGAATTT
TTTCCAGCATTTCAGGCTTTTACTAATGATCTTCTTGAAATCTTAGAAATTGATGACTTGGATG
CCATTGTACCTGCAGTAAAGAAATTAAAAGTGCTTTCATACTGAAAACAATCACATCAATTTTA
CTGTGTAAATTGCATTTTTAACATTTTAAGTATTTTTAAAGGACTGATCCTGAGACAGGGTTAT
AAATGTATCAGCTCTCAGAATTCATCCTCTCACCATTGGCCATATATGGTCGGTCTCAATCCAT
ATAATTTTTATTTTTGATTATTTAATAAAATGTAGCTGTTGTTATTAAAATAGTAAATTAACTT
TAGATCCCTTAATCATTTCCTAAGCAATGCTTGAGTGCTCTAAAATGTAAGGAAGAGACTGTAA
CAAAAGAGACTCATGAAGACATTGCAAATTATAGAAAGTTGCATTTAACTTCAAGGTTTAATGA
CCCTTTGGTCAGAGGAAAAAGAATGCCAGTTGCTTTCTAAGTCCAACCAATAGGAAGCCTTTGT
TTTCCAGGCAAGGACTAATGGGCATATTCTATTAAGATAAGCTTACAGCTGTTGGCCTGAAAAG
CAAGAAGAAAAGGTTTTGTTTTTGTATCAAGATAGGAAGTTAGTCATGGAGTGAAATAGATGCT
TAGGTAGAAGTCTTTCTGTGTCTTTATTTGCAATACCATGTAATGTACTTTTATAAAGAAATAA
GATCACAAATAAAGATTTTATGAAGAATTTCCAAA

hide sequence

RefSeq Acc Id:

XM_006243639 ⟹ XP_006243701

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,695,623 - 108,742,620 (+)	NCBI
mRatBN7.2	8	99,816,269 - 99,863,279 (+)	NCBI
Rnor_6.0	8	107,501,332 - 107,548,274 (+)	NCBI
Rnor_5.0	8	106,921,022 - 106,973,978 (+)	NCBI

Sequence:

show sequence

GTCAGCCTGGTTGCGCTAACGGACGCGTAGGCGGGGCTTAAGCCGCGGGGCGGGCGCGATTCTA
GCTACAAGCAGCGACTGAGATCAAGATCCAGTTTTGGACATGAGACTCGTTGGGTGATCATTTT
ATTGGGATTAACTTGAACCATCTATGTAAACTACAGAGGAATCGCTATGACTGAGGGAACTCAA
GTATTTTTATTGCCGATCTCTACTTCAGATTCTACAAAAGAACCACTGTCCACAGTGACTTCTC
AAGCCCAGGATTCTAGCCTTTCAGCAAACAGACCCGTGACTGAAAAACAGCAGGAGGAAGCAGA
ATGGGAAAGCATCAGTAGGCTGTTGGTGACGCGTGGCTTTAAACCTTTGTGCCTAGTCAAAGGA
GCCAATCTCAGAGATTTCATCGTTTTTGACAAACAATCATCACAAAGAATGAGGCAGGCTTTCA
AAACACTGATGGAAGAAACCACACGTCAGCAGAGCATGCTACAGGAGCTCATAGAGACAAACCA
TCAGCTTAAAAGTGAACTTCAGCTAGAACAGAACCGAGCGGCACACCAGGAACAGCGAGCCAAT
GACCTTCAGCAGATCATGGACAGTGTGAAATCCAAAATTGGTGAATTAGAAGATGAATCGCTAA
ACAGGGTTTGCCAGGAACAAAATAGAATAAAAGACCTTCAAAAGGAATATAAAACGTTACAGAT
GAAATGCCAGCATTATAAGAAAAAACAAATGGAGCAAGAAGAGACCATTGCTTCTTTGCAAAAG
GAGATCCGCAGATTTGCCAAAGAGGAAGAAGATCGTGTTATCACTCAAAAGAGACTGTTTACCC
ATCTCTGCCGAAGAGTTCCTCATTCAGTCTTGGATAAACAGCAGTGTGGGGAGGATGACAGCCA
GTCAGAAGGAAAAGACTATCTAAACCTGGGCGTCTCACCAACCTATAAAGGCCTTCTGACGTCG
TTACAGAAGCAACTTGAGAAATCCAATTCCAAGATCGACGTGCTGTTGGGTGAAAAGCTGAACC
TCCAAAAAGATCTGGAAAACAGGCCCACAGAACATGAACTGAGACTTTATAAACAACAAGTGAA
GAAGCTGGAGAAAACCCTTAAGAAAAACATAAAATTACAAGATCTTATTGGTCAAAAAAAATCT
GATGACATGGAGAAAAAGGATGAGCCCAGCAAAGACATCCACCAGCAGGCTCTGGTTGACCAGA
GATACTTTCAGGTGCTGTGCAGCATCGATTCAATCGTTCATAGCCCACGAGCCCCAGGAGTCAT
TTACAAACAGAGCAAAGAAAGAGCCCAAAACCGTAGTAAAGATGCTGTTCAAGAGTGTGGATTC
GAACATCTTGTTCCTGTAATAGAAATGTGGGCAGATGAACTGACATCCTTAAAGGATTTGTATA
AGTCCTTAAAAATACTGTCTGCAGAACTGATACCTTGGCATAATTTAAAGAAACCGAATGAAAA
TGAAGGTGTCAAAGTAGGAGATCTGTTGTTAATGGTAGATACCATGTTGGAAGAAGTTGAAAAC
CAGAAAGAGACCAGCAGCATGCCAAACTCTCAAACTTTGCAAGCTATTGTTTCTCACTTCCAAA
AGCTGTTTGATGTGCAGTCTTTAAATGGAGTCTATCCTCGAATGAATGAAGTGTACGCCAGGCT
TGGAGAAATGAACAACGCTGTAAGAAACCTTCAGGAGCTCCTGGGATTAGACAGTTCATCGTCA
TTGTGTATGGTGGTCAGCACCGTTGGGAAGTTGTGTAAGATGATTAATGAAGATGTCAGTGAGC
AGATTAAACGAGTGTTAGGACCTGAAGACCTACAAAGCATTATCAACAAATTGGAAGAGCATGA
GGAATTTTTTCCAGCATTTCAGGCTTTTACTAATGATCTTCTTGAAATCTTAGAAATTGATGAC
TTGGATGCCATTGTACCTGCAGTAAAGAAATTAAAAGTGCTTTCATACTGAAAACAATCACATC
AATTTTACTGTGTAAATTGCATTTTTAACATTTTAAGTATTTTTAAAGGACTGATCCTGAGACA
GGGTTATAAATGTATCAGCTCTCAGAATTCATCCTCTCACCATTGGCCATATATGGTCGGTCTC
AATCCATATAATTTTTATTTTTGATTATTTAATAAAATGTAGCTGTTGTTATTAAAATAGTAAA
TTAACTTTAGATCCCTTAATCATTTCCTAAGCAATGCTTGAGTGCTCTAAAATGTAAGGAAGAG
ACTGTAACAAAAGAGACTCATGAAGACATTGCAAATTATAGAAAGTTGCATTTAACTTCAAGGT
TTAATGACCCTTTGGTCAGAGGAAAAAGAATGCCAGTTGCTTTCTAAGTCCAACCAATAGGAAG
CCTTTGTTTTCCAGGCAAGGACTAATGGGCATATTCTATTAAGATAAGCTTACAGCTGTTGGCC
TGAAAAGCAAGAAGAAAAGGTTTTGTTTTTGTATCAAGATAGGAAGTTAGTCATGGAGTGAAAT
AGATGCTTAGGTAGAAGTCTTTCTGTGTCTTTATTTGCAATACCATGTAATGTACTTTTATAAA
GAAATAAGATCACAAATAAAGATTTTATGAAGAATTTCCAAA

hide sequence

RefSeq Acc Id:

XM_006243640 ⟹ XP_006243702

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,708,045 - 108,742,620 (+)	NCBI
mRatBN7.2	8	99,828,796 - 99,863,279 (+)	NCBI
Rnor_6.0	8	107,513,836 - 107,548,274 (+)	NCBI
Rnor_5.0	8	106,921,022 - 106,973,978 (+)	NCBI

Sequence:

show sequence

TCCTTTCTCCGTGATAACTCCAGCTTGTGTTGACACACAGAACCAGCCAGCACAGTGACTAAGC
CAGGCGCTGATAGAGATGCAGGAGGAAGCAGAATGGGAAAGCATCAGTAGGCTGTTGGTGACGC
GTGGCTTTAAACCTTTGTGCCTAGTCAAAGGAGCCAATCTCAGAGATTTCATCGTTTTTGACAA
ACAATCATCACAAAGAATGAGGCAGGCTTTCAAAACACTGATGGAAGAAACCACACGTCAGCAG
AGCATGCTACAGGAGCTCATAGAGACAAACCATCAGCTTAAAAGTGAACTTCAGCTAGAACAGA
ACCGAGCGGCACACCAGGAACAGCGAGCCAATGACCTTCAGCAGATCATGGACAGTGTGAAATC
CAAAATTGGTGAATTAGAAGATGAATCGCTAAACAGGGTTTGCCAGGAACAAAATAGAATAAAA
GACCTTCAAAAGGAATATAAAACGTTACAGATGAAATGCCAGCATTATAAGAAAAAACAAATGG
AGCAAGAAGAGACCATTGCTTCTTTGCAAAAGGAGATCCGCAGATTTGCCAAAGAGGAAGAAGA
TCGTGTTATCACTCAAAAGAGACTGTTTACCCATCTCTGCCGAAGAGTTCCTCATTCAGTCTTG
GATAAACAATTGCTTTGTCTAATTGATTACTATGAATGTAAACTTAGAAAACATCATATACAAA
GGCAGTGTGGGGAGGATGACAGCCAGTCAGAAGGAAAAGACTATCTAAACCTGGGCGTCTCACC
AACCTATAAAGGCCTTCTGACGTCGTTACAGAAGCAACTTGAGAAATCCAATTCCAAGATCGAC
GTGCTGTTGGGTGAAAAGCTGAACCTCCAAAAAGATCTGGAAAACAGGCCCACAGAACATGAAC
TGAGACTTTATAAACAACAAGTGAAGAAGCTGGAGAAAACCCTTAAGAAAAACATAAAATTACA
AGATCTTATTGGTCAAAAAAAATCTGATGACATGGAGAAAAAGGATGAGCCCAGCAAAGACATC
CACCAGCAGGCTCTGGTTGACCAGAGATACTTTCAGGTGCTGTGCAGCATCGATTCAATCGTTC
ATAGCCCACGAGCCCCAGGAGTCATTTACAAACAGAGCAAAGAAAGAGCCCAAAACCGTAGTAA
AGATGCTGTTCAAGAGTGTGGATTCGAACATCTTGTTCCTGTAATAGAAATGTGGGCAGATGAA
CTGACATCCTTAAAGGATTTGTATAAGTCCTTAAAAATACTGTCTGCAGAACTGATACCTTGGC
ATAATTTAAAGAAACCGAATGAAAATGAAGGTGTCAAAGTAGGAGATCTGTTGTTAATGGTAGA
TACCATGTTGGAAGAAGTTGAAAACCAGAAAGAGACCAGCAGCATGCCAAACTCTCAAACTTTG
CAAGCTATTGTTTCTCACTTCCAAAAGCTGTTTGATGTGCAGTCTTTAAATGGAGTCTATCCTC
GAATGAATGAAGTGTACGCCAGGCTTGGAGAAATGAACAACGCTGTAAGAAACCTTCAGGAGCT
CCTGGGATTAGACAGTTCATCGTCATTGTGTATGGTGGTCAGCACCGTTGGGAAGTTGTGTAAG
ATGATTAATGAAGATGTCAGTGAGCAGATTAAACGAGTGTTAGGACCTGAAGACCTACAAAGCA
TTATCAACAAATTGGAAGAGCATGAGGAATTTTTTCCAGCATTTCAGGCTTTTACTAATGATCT
TCTTGAAATCTTAGAAATTGATGACTTGGATGCCATTGTACCTGCAGTAAAGAAATTAAAAGTG
CTTTCATACTGAAAACAATCACATCAATTTTACTGTGTAAATTGCATTTTTAACATTTTAAGTA
TTTTTAAAGGACTGATCCTGAGACAGGGTTATAAATGTATCAGCTCTCAGAATTCATCCTCTCA
CCATTGGCCATATATGGTCGGTCTCAATCCATATAATTTTTATTTTTGATTATTTAATAAAATG
TAGCTGTTGTTATTAAAATAGTAAATTAACTTTAGATCCCTTAATCATTTCCTAAGCAATGCTT
GAGTGCTCTAAAATGTAAGGAAGAGACTGTAACAAAAGAGACTCATGAAGACATTGCAAATTAT
AGAAAGTTGCATTTAACTTCAAGGTTTAATGACCCTTTGGTCAGAGGAAAAAGAATGCCAGTTG
CTTTCTAAGTCCAACCAATAGGAAGCCTTTGTTTTCCAGGCAAGGACTAATGGGCATATTCTAT
TAAGATAAGCTTACAGCTGTTGGCCTGAAAAGCAAGAAGAAAAGGTTTTGTTTTTGTATCAAGA
TAGGAAGTTAGTCATGGAGTGAAATAGATGCTTAGGTAGAAGTCTTTCTGTGTCTTTATTTGCA
ATACCATGTAATGTACTTTTATAAAGAAATAAGATCACAAATAAAGATTTTATGAAGAATTTCC
AAA

hide sequence

RefSeq Acc Id:

XM_008766556 ⟹ XP_008764778

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,712,663 - 108,742,620 (+)	NCBI
mRatBN7.2	8	99,833,325 - 99,863,279 (+)	NCBI
Rnor_6.0	8	107,520,069 - 107,548,274 (+)	NCBI

Sequence:

show sequence

CAACCACTGAGCCCTCTTTCCAGCCCCAGAAAAATGTTTAATGGAAAAGCAGTATCAATACCTA
TATTTGGCAACACCAATACCTATATTTGTTTAGCCCAAGTATCAGATTGATGCATCTCATCAGT
AAGCACCAGTCAAAACCCAAAGGAGGGTGGCATATATCCCTATGCAAGGAAGTTACTGGTATTT
CTCCAGCCACCCAACGAGAGGAAAGGACAAGGTACGGAGAGGATGCAGCCATCATGATCTGACT
CTCTGGAACTCCAGATGAAATGCCAGCATTATAAGAAAAAACAAATGGAGCAAGAAGAGACCAT
TGCTTCTTTGCAAAAGGAGATCCGCAGATTTGCCAAAGAGGAAGAAGATCGTGTTATCACTCAA
AAGAGACTGTTTACCCATCTCTGCCGAAGAGTTCCTCATTCAGTCTTGGATAAACAATTGCTTT
GTCTAATTGATTACTATGAATGTAAACTTAGAAAACATCATATACAAAGGCAGTGTGGGGAGGA
TGACAGCCAGTCAGAAGGAAAAGACTATCTAAACCTGGGCGTCTCACCAACCTATAAAGGCCTT
CTGACGTCGTTACAGAAGCAACTTGAGAAATCCAATTCCAAGATCGACGTGCTGTTGGGTGAAA
AGCTGAACCTCCAAAAAGATCTGGAAAACAGGCCCACAGAACATGAACTGAGACTTTATAAACA
ACAAGTGAAGAAGCTGGAGAAAACCCTTAAGAAAAACATAAAATTACAAGATCTTATTGGTCAA
AAAAAATCTGATGACATGGAGAAAAAGGATGAGCCCAGCAAAGACATCCACCAGCAGGCTCTGG
TTGACCAGAGATACTTTCAGGTGCTGTGCAGCATCGATTCAATCGTTCATAGCCCACGAGCCCC
AGGAGTCATTTACAAACAGAGCAAAGAAAGAGCCCAAAACCGTAGTAAAGATGCTGTTCAAGAG
TGTGGATTCGAACATCTTGTTCCTGTAATAGAAATGTGGGCAGATGAACTGACATCCTTAAAGG
ATTTGTATAAGTCCTTAAAAATACTGTCTGCAGAACTGATACCTTGGCATAATTTAAAGAAACC
GAATGAAAATGAAGGTGTCAAAGTAGGAGATCTGTTGTTAATGGTAGATACCATGTTGGAAGAA
GTTGAAAACCAGAAAGAGACCAGCAGCATGCCAAACTCTCAAACTTTGCAAGCTATTGTTTCTC
ACTTCCAAAAGCTGTTTGATGTGCAGTCTTTAAATGGAGTCTATCCTCGAATGAATGAAGTGTA
CGCCAGGCTTGGAGAAATGAACAACGCTGTAAGAAACCTTCAGGAGCTCCTGGGATTAGACAGT
TCATCGTCATTGTGTATGGTGGTCAGCACCGTTGGGAAGTTGTGTAAGATGATTAATGAAGATG
TCAGTGAGCAGATTAAACGAGTGTTAGGACCTGAAGACCTACAAAGCATTATCAACAAATTGGA
AGAGCATGAGGAATTTTTTCCAGCATTTCAGGCTTTTACTAATGATCTTCTTGAAATCTTAGAA
ATTGATGACTTGGATGCCATTGTACCTGCAGTAAAGAAATTAAAAGTGCTTTCATACTGAAAAC
AATCACATCAATTTTACTGTGTAAATTGCATTTTTAACATTTTAAGTATTTTTAAAGGACTGAT
CCTGAGACAGGGTTATAAATGTATCAGCTCTCAGAATTCATCCTCTCACCATTGGCCATATATG
GTCGGTCTCAATCCATATAATTTTTATTTTTGATTATTTAATAAAATGTAGCTGTTGTTATTAA
AATAGTAAATTAACTTTAGATCCCTTAATCATTTCCTAAGCAATGCTTGAGTGCTCTAAAATGT
AAGGAAGAGACTGTAACAAAAGAGACTCATGAAGACATTGCAAATTATAGAAAGTTGCATTTAA
CTTCAAGGTTTAATGACCCTTTGGTCAGAGGAAAAAGAATGCCAGTTGCTTTCTAAGTCCAACC
AATAGGAAGCCTTTGTTTTCCAGGCAAGGACTAATGGGCATATTCTATTAAGATAAGCTTACAG
CTGTTGGCCTGAAAAGCAAGAAGAAAAGGTTTTGTTTTTGTATCAAGATAGGAAGTTAGTCATG
GAGTGAAATAGATGCTTAGGTAGAAGTCTTTCTGTGTCTTTATTTGCAATACCATGTAATGTAC
TTTTATAAAGAAATAAGATCACAAATAAAGATTTTATGAAGAATTTCCAAA

hide sequence

RefSeq Acc Id:

XM_063265890 ⟹ XP_063121960

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,695,620 - 108,742,620 (+)	NCBI

RefSeq Acc Id:

XM_063265891 ⟹ XP_063121961

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,689,599 - 108,742,620 (+)	NCBI

RefSeq Acc Id:

XM_063265892 ⟹ XP_063121962

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,695,803 - 108,742,620 (+)	NCBI

RefSeq Acc Id:

XM_063265894 ⟹ XP_063121964

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,695,796 - 108,742,620 (+)	NCBI

RefSeq Acc Id:

XM_063265895 ⟹ XP_063121965

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,689,601 - 108,742,620 (+)	NCBI

RefSeq Acc Id:

XM_063265896 ⟹ XP_063121966

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,689,562 - 108,742,620 (+)	NCBI

RefSeq Acc Id:

XM_063265897 ⟹ XP_063121967

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,695,757 - 108,742,620 (+)	NCBI

RefSeq Acc Id:

XM_063265899 ⟹ XP_063121969

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,695,620 - 108,742,620 (+)	NCBI

RefSeq Acc Id:

XM_063265900 ⟹ XP_063121970

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,689,562 - 108,742,620 (+)	NCBI

RefSeq Acc Id:

XM_063265901 ⟹ XP_063121971

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,695,758 - 108,742,620 (+)	NCBI

RefSeq Acc Id:

XM_063265902 ⟹ XP_063121972

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,708,045 - 108,742,620 (+)	NCBI

RefSeq Acc Id:

XM_063265903 ⟹ XP_063121973

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,702,877 - 108,742,620 (+)	NCBI

RefSeq Acc Id:

XM_063265904 ⟹ XP_063121974

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,712,663 - 108,742,620 (+)	NCBI

RefSeq Acc Id:

XR_010054011

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	108,695,621 - 108,718,707 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001017470	(Get FASTA)	NCBI Sequence Viewer
	NP_001415800	(Get FASTA)	NCBI Sequence Viewer
	NP_001415801	(Get FASTA)	NCBI Sequence Viewer
	NP_001415802	(Get FASTA)	NCBI Sequence Viewer
	XP_006243697	(Get FASTA)	NCBI Sequence Viewer
	XP_006243701	(Get FASTA)	NCBI Sequence Viewer
	XP_006243702	(Get FASTA)	NCBI Sequence Viewer
	XP_008764778	(Get FASTA)	NCBI Sequence Viewer
	XP_063121960	(Get FASTA)	NCBI Sequence Viewer
	XP_063121961	(Get FASTA)	NCBI Sequence Viewer
	XP_063121962	(Get FASTA)	NCBI Sequence Viewer
	XP_063121964	(Get FASTA)	NCBI Sequence Viewer
	XP_063121965	(Get FASTA)	NCBI Sequence Viewer
	XP_063121966	(Get FASTA)	NCBI Sequence Viewer
	XP_063121967	(Get FASTA)	NCBI Sequence Viewer
	XP_063121969	(Get FASTA)	NCBI Sequence Viewer
	XP_063121970	(Get FASTA)	NCBI Sequence Viewer
	XP_063121971	(Get FASTA)	NCBI Sequence Viewer
	XP_063121972	(Get FASTA)	NCBI Sequence Viewer
	XP_063121973	(Get FASTA)	NCBI Sequence Viewer
	XP_063121974	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87075	(Get FASTA)	NCBI Sequence Viewer
	EDL77445	(Get FASTA)	NCBI Sequence Viewer
	EDL77446	(Get FASTA)	NCBI Sequence Viewer
	EDL77447	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000053430.2
	ENSRNOP00000068907.1
	ENSRNOP00000072786
	ENSRNOP00000072786.1
GenBank Protein	Q5PQQ9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001017470 ⟸ NM_001017470

- Sequence:

show sequence

MTEGTQVFLLPISTSDSTKEPLSTVTSQAQDSSLSANRPVTEKQQEEAEWESISRLLVTRGFKP
LCLVKGANLRDFIVFDKQSSQRMRQAFKTLMEETTRQQSMLQELIETNHQLKSELQLEQNRAAH
QEQRANDLQQIMDSVKSKIGELEDESLNRVCQEQNRIKDLQKEYKTLQMKCQHYKKKQMEQEET
IASLQKEIRRFAKEEEDRVITQKRLFTHLCRRVPHSVLDKQQCGEDDSQSEGKDYLNLGVSPTY
KGLLTSLQKQLEKSNSKIDVLLGEKLNLQKDLENRPTEHELRLYKQQVKKLEKTLKKNIKLQDL
IGQKKSDDMEKKDEPSKDIHQQALVDQRYFQVLCSIDSIVHSPRAPGVIYKQSKERAQNRSKDA
VQECGFEHLVPVIEMWADELTSLKDLYKSLKILSAELIPWHNLKKPNENEGVKVGDLLLMVDTM
LEEVENQKETSSMPNSQTLQAIVSHFQKLFDVQSLNGVYPRMNEVYARLGEMNNAVRNLQELLG
LDSSSSLCMVVSTVGKLCKMINEDVSEQIKRVLGPEDLQSIINKLEEHEEFFPAFQAFTNDLLE
ILEIDDLDAIVPAVKKLKVLSY

hide sequence

RefSeq Acc Id:	XP_006243697 ⟸ XM_006243635
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K3U9 (UniProtKB/TrEMBL), A6I2D0 (UniProtKB/TrEMBL), A0A0G2JU00 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTEGTQVFLLPISTSDSTKEPLSTVTSQAQDSSLSANRPVTEKQQEEAEWESISRLLVTRGFKP LCLVKGANLRDFIVFDKQSSQRMRQAFKTLMEETTRQQSMLQELIETNHQLKSELQLEQNRAAH QEQRANDLQQIMDSVKSKIGELEDESLNRVCQEQNRIKDLQKEYKTLQMKCQHYKKKQMEQEET IASLQKEIRRFAKEEEDRVITQKRLFTHLCRRVPHSVLDKQLLCLIDYYECKLRKHHIQRQCGE DDSQSEGKDYLNLGVSPTYKGLLTSLQKQLEKSNSKIDVLLGEKLNLQKDLENRPTEHELRLYK QQVKKLEKTLKKNIKLQDLIGQKKSDDMEKKDEPSKDIHQQALVDQRYFQVLCSIDSIVHSPRA PGVIYKQSKERAQNRSKDAVQECGFEHLVPVIEMWADELTSLKDLYKSLKILSAELIPWHNLKK PNENEGVKVGDLLLMVDTMLEEVENQKETSSMPNSQTLQAIVSHFQKLFDVQSLNGVYPRMNEV YARLGEMNNAVRNLQELLGLDSSSSLCMVVSTVGKLCKMINEDVSEQIKRVLGPEDLQSIINKL EEHEEFFPAFQAFTNDLLEILEIDDLDAIVPAVKKLKVLSY hide sequence

RefSeq Acc Id:	XP_006243701 ⟸ XM_006243639
- Peptide Label:	isoform X4
- UniProtKB:	Q5PQQ9 (UniProtKB/Swiss-Prot), A0A0G2JU00 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTEGTQVFLLPISTSDSTKEPLSTVTSQAQDSSLSANRPVTEKQQEEAEWESISRLLVTRGFKP LCLVKGANLRDFIVFDKQSSQRMRQAFKTLMEETTRQQSMLQELIETNHQLKSELQLEQNRAAH QEQRANDLQQIMDSVKSKIGELEDESLNRVCQEQNRIKDLQKEYKTLQMKCQHYKKKQMEQEET IASLQKEIRRFAKEEEDRVITQKRLFTHLCRRVPHSVLDKQQCGEDDSQSEGKDYLNLGVSPTY KGLLTSLQKQLEKSNSKIDVLLGEKLNLQKDLENRPTEHELRLYKQQVKKLEKTLKKNIKLQDL IGQKKSDDMEKKDEPSKDIHQQALVDQRYFQVLCSIDSIVHSPRAPGVIYKQSKERAQNRSKDA VQECGFEHLVPVIEMWADELTSLKDLYKSLKILSAELIPWHNLKKPNENEGVKVGDLLLMVDTM LEEVENQKETSSMPNSQTLQAIVSHFQKLFDVQSLNGVYPRMNEVYARLGEMNNAVRNLQELLG LDSSSSLCMVVSTVGKLCKMINEDVSEQIKRVLGPEDLQSIINKLEEHEEFFPAFQAFTNDLLE ILEIDDLDAIVPAVKKLKVLSY hide sequence

RefSeq Acc Id:	XP_006243702 ⟸ XM_006243640
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2JU00 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQEEAEWESISRLLVTRGFKPLCLVKGANLRDFIVFDKQSSQRMRQAFKTLMEETTRQQSMLQE LIETNHQLKSELQLEQNRAAHQEQRANDLQQIMDSVKSKIGELEDESLNRVCQEQNRIKDLQKE YKTLQMKCQHYKKKQMEQEETIASLQKEIRRFAKEEEDRVITQKRLFTHLCRRVPHSVLDKQLL CLIDYYECKLRKHHIQRQCGEDDSQSEGKDYLNLGVSPTYKGLLTSLQKQLEKSNSKIDVLLGE KLNLQKDLENRPTEHELRLYKQQVKKLEKTLKKNIKLQDLIGQKKSDDMEKKDEPSKDIHQQAL VDQRYFQVLCSIDSIVHSPRAPGVIYKQSKERAQNRSKDAVQECGFEHLVPVIEMWADELTSLK DLYKSLKILSAELIPWHNLKKPNENEGVKVGDLLLMVDTMLEEVENQKETSSMPNSQTLQAIVS HFQKLFDVQSLNGVYPRMNEVYARLGEMNNAVRNLQELLGLDSSSSLCMVVSTVGKLCKMINED VSEQIKRVLGPEDLQSIINKLEEHEEFFPAFQAFTNDLLEILEIDDLDAIVPAVKKLKVLSY hide sequence

RefSeq Acc Id:

XP_008764778 ⟸ XM_008766556

- Peptide Label:

isoform X8

- Sequence:

show sequence

MKCQHYKKKQMEQEETIASLQKEIRRFAKEEEDRVITQKRLFTHLCRRVPHSVLDKQLLCLIDY
YECKLRKHHIQRQCGEDDSQSEGKDYLNLGVSPTYKGLLTSLQKQLEKSNSKIDVLLGEKLNLQ
KDLENRPTEHELRLYKQQVKKLEKTLKKNIKLQDLIGQKKSDDMEKKDEPSKDIHQQALVDQRY
FQVLCSIDSIVHSPRAPGVIYKQSKERAQNRSKDAVQECGFEHLVPVIEMWADELTSLKDLYKS
LKILSAELIPWHNLKKPNENEGVKVGDLLLMVDTMLEEVENQKETSSMPNSQTLQAIVSHFQKL
FDVQSLNGVYPRMNEVYARLGEMNNAVRNLQELLGLDSSSSLCMVVSTVGKLCKMINEDVSEQI
KRVLGPEDLQSIINKLEEHEEFFPAFQAFTNDLLEILEIDDLDAIVPAVKKLKVLSY

hide sequence

RefSeq Acc Id:

ENSRNOP00000068907 ⟸ ENSRNOT00000081594

RefSeq Acc Id:

ENSRNOP00000053430 ⟸ ENSRNOT00000056590

RefSeq Acc Id:

ENSRNOP00000072786 ⟸ ENSRNOT00000081029

RefSeq Acc Id:	XP_063121966 ⟸ XM_063265896
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K3U9 (UniProtKB/TrEMBL), A6I2D0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121970 ⟸ XM_063265900
- Peptide Label:	isoform X4
- UniProtKB:	Q5PQQ9 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063121961 ⟸ XM_063265891
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063121965 ⟸ XM_063265895
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K3U9 (UniProtKB/TrEMBL), A6I2D0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121960 ⟸ XM_063265890
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063121969 ⟸ XM_063265899
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063121967 ⟸ XM_063265897
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K3U9 (UniProtKB/TrEMBL), A6I2D0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121971 ⟸ XM_063265901
- Peptide Label:	isoform X4
- UniProtKB:	Q5PQQ9 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063121964 ⟸ XM_063265894
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K3U9 (UniProtKB/TrEMBL), A6I2D0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121962 ⟸ XM_063265892
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063121973 ⟸ XM_063265903
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063121972 ⟸ XM_063265902
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063121974 ⟸ XM_063265904
- Peptide Label:	isoform X9

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5PQQ9-F1-model_v2	AlphaFold	Q5PQQ9	1-598	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696209

Promoter ID:

EPDNEW_R6733

Type:

single initiation site

Name:

Cep70_1

Description:

centrosomal protein 70

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	107,495,320 - 107,495,380	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561486	AgrOrtholog
BioCyc Gene	G2FUF-29401	BioCyc
Ensembl Genes	ENSRNOG00000022845	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000056590.5	UniProtKB/Swiss-Prot
	ENSRNOT00000081029.2	UniProtKB/TrEMBL
	ENSRNOT00000081594.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7134655	IMAGE-MGC_LOAD
InterPro	CEP70	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:367153	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94447	IMAGE-MGC_LOAD
NCBI Gene	367153	ENTREZGENE
PANTHER	CENTROSOMAL PROTEIN OF 70 KDA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR14594	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cep70	PhenoGen
RatGTEx	ENSRNOG00000022845	RatGTEx
UniProt	A0A0G2JU00	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2K3U9	ENTREZGENE, UniProtKB/TrEMBL
	A6I2D0	ENTREZGENE, UniProtKB/TrEMBL
	CEP70_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-04-27	Cep70	centrosomal protein 70	Cep70	centrosomal protein 70kDa	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-29	Cep70	centrosomal protein 70kDa	Cep70	centrosomal protein 70	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Cep70	centrosomal protein 70	LOC367153	similar to p10-binding protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC367153	similar to p10-binding protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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