Samd12 (sterile alpha motif domain containing 12) - Rat Genome Database

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Gene: Samd12 (sterile alpha motif domain containing 12) Rattus norvegicus
Analyze
Symbol: Samd12
Name: sterile alpha motif domain containing 12
RGD ID: 1561402
Description: Predicted to be involved in transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to be active in cytoplasmic side of plasma membrane. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 1. Orthologous to human SAMD12 (sterile alpha motif domain containing 12); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362910; RGD1561402; similar to sterile alpha motif domain containing 12; sterile alpha motif domain-containing protein 12
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8786,658,709 - 86,953,879 (-)NCBIGRCr8
mRatBN7.2784,768,850 - 85,064,057 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl784,768,254 - 85,271,766 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx786,679,844 - 86,974,355 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0788,881,027 - 89,175,524 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0788,686,515 - 88,981,015 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0792,995,599 - 93,286,757 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl792,993,330 - 93,502,591 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0793,636,142 - 93,930,174 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4789,785,050 - 90,090,875 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera781,608,279 - 81,901,215 (-)NCBICelera
Cytogenetic Map7q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Samd12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8786,658,709 - 86,953,879 (-)NCBIGRCr8
mRatBN7.2784,768,850 - 85,064,057 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl784,768,254 - 85,271,766 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx786,679,844 - 86,974,355 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0788,881,027 - 89,175,524 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0788,686,515 - 88,981,015 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0792,995,599 - 93,286,757 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl792,993,330 - 93,502,591 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0793,636,142 - 93,930,174 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4789,785,050 - 90,090,875 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera781,608,279 - 81,901,215 (-)NCBICelera
Cytogenetic Map7q31NCBI
SAMD12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388118,131,825 - 118,621,963 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8118,189,455 - 118,622,112 (-)EnsemblGRCh38hg38GRCh38
GRCh378119,144,064 - 119,634,202 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368119,270,875 - 119,703,365 (-)NCBINCBI36Build 36hg18NCBI36
Build 348119,459,407 - 119,703,301NCBI
Celera8115,390,217 - 115,822,474 (-)NCBICelera
Cytogenetic Map8q24.11-q24.12NCBI
HuRef8114,528,469 - 114,960,887 (-)NCBIHuRef
CHM1_18119,242,770 - 119,675,204 (-)NCBICHM1_1
T2T-CHM13v2.08119,260,296 - 119,750,442 (-)NCBIT2T-CHM13v2.0
Samd12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391553,262,514 - 53,765,926 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1553,317,206 - 53,765,933 (-)EnsemblGRCm39 Ensembl
GRCm381553,399,113 - 53,902,535 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1553,453,810 - 53,902,537 (-)EnsemblGRCm38mm10GRCm38
MGSCv371553,293,356 - 53,733,991 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361553,291,884 - 53,732,519 (-)NCBIMGSCv36mm8
Celera1555,020,883 - 55,465,415 (-)NCBICelera
Cytogenetic Map15C- D1NCBI
cM Map1521.1NCBI
Samd12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541724,145,264 - 24,541,599 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541724,137,340 - 24,541,572 (-)NCBIChiLan1.0ChiLan1.0
SAMD12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27135,555,533 - 136,044,816 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18111,071,079 - 111,560,037 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08114,823,792 - 115,312,738 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18117,345,231 - 117,832,607 (-)NCBIpanpan1.1PanPan1.1panPan2
SAMD12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11317,525,855 - 17,897,153 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1317,528,421 - 17,897,009 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1317,524,208 - 17,898,719 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01317,813,622 - 18,191,246 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1317,816,236 - 18,191,235 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11317,552,401 - 17,946,810 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01317,651,658 - 18,029,189 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01317,897,028 - 18,274,675 (-)NCBIUU_Cfam_GSD_1.0
Samd12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530320,432,597 - 20,864,239 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647027,858,427 - 28,228,114 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647027,858,661 - 28,230,543 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAMD12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl420,143,883 - 20,570,768 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1420,143,614 - 20,570,780 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2421,342,600 - 21,379,800 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SAMD12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18112,834,159 - 113,246,812 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8112,877,688 - 113,246,824 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603927,055,101 - 27,469,422 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Samd12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476316,477,471 - 16,867,493 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476316,475,162 - 16,867,444 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Samd12
1164 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:52
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000064877
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78022129994811326Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78022129993595843Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat

Markers in Region
D7Rat112  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2785,196,886 - 85,197,132 (+)MAPPERmRatBN7.2
Rnor_6.0793,417,642 - 93,417,887NCBIRnor6.0
Rnor_5.0794,061,716 - 94,061,961UniSTSRnor5.0
Celera782,019,130 - 82,019,375UniSTS
RH 3.4 Map7586.8UniSTS
RH 3.4 Map7586.8RGD
RH 2.0 Map7497.5RGD
SHRSP x BN Map751.19RGD
Cytogenetic Map7q31UniSTS
D7Rat139  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2784,927,906 - 84,928,080 (+)MAPPERmRatBN7.2
Rnor_6.0793,155,229 - 93,155,402NCBIRnor6.0
Rnor_5.0793,795,643 - 93,795,816UniSTSRnor5.0
RGSC_v3.4789,944,921 - 89,945,095RGDRGSC3.4
RGSC_v3.4789,944,922 - 89,945,095UniSTSRGSC3.4
RGSC_v3.1789,979,152 - 89,979,325RGD
Celera781,765,848 - 81,766,021UniSTS
RH 3.4 Map7581.0RGD
RH 3.4 Map7581.0UniSTS
RH 2.0 Map7494.8RGD
SHRSP x BN Map752.31RGD
Cytogenetic Map7q31UniSTS
BE105380  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2784,769,080 - 84,769,258 (+)MAPPERmRatBN7.2
Rnor_6.0792,995,830 - 92,996,007NCBIRnor6.0
Rnor_5.0793,636,373 - 93,636,550UniSTSRnor5.0
RGSC_v3.4789,785,281 - 89,785,458UniSTSRGSC3.4
Celera781,608,510 - 81,608,687UniSTS
RH 3.4 Map7583.2UniSTS
Cytogenetic Map7q31UniSTS
BF405999  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2784,944,817 - 84,945,065 (+)MAPPERmRatBN7.2
Rnor_6.0793,172,140 - 93,172,387NCBIRnor6.0
Rnor_5.0793,812,554 - 93,812,801UniSTSRnor5.0
RGSC_v3.4789,961,833 - 89,962,080UniSTSRGSC3.4
Celera781,782,767 - 81,783,014UniSTS
RH 3.4 Map7583.2UniSTS
Cytogenetic Map7q31UniSTS
BF415978  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2785,164,679 - 85,164,806 (+)MAPPERmRatBN7.2
Rnor_6.0793,385,026 - 93,385,152NCBIRnor6.0
Rnor_5.0794,029,078 - 94,029,204UniSTSRnor5.0
RGSC_v3.4790,193,183 - 90,193,309UniSTSRGSC3.4
Celera781,987,798 - 81,987,924UniSTS
RH 3.4 Map7587.5UniSTS
Cytogenetic Map7q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 48 2 5
Low 37 24 10 8 10 8 8 26 34 25 6 8
Below cutoff 3 6 30 28 11 28 3 1 14

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000064877   ⟹   ENSRNOP00000063213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl784,768,254 - 85,271,766 (-)Ensembl
Rnor_6.0 Ensembl792,995,599 - 93,280,009 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076080   ⟹   ENSRNOP00000068009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl785,034,712 - 85,271,766 (-)Ensembl
Rnor_6.0 Ensembl793,193,233 - 93,502,591 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076327   ⟹   ENSRNOP00000068320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl792,993,330 - 92,996,025 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000077033   ⟹   ENSRNOP00000068526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl793,192,354 - 93,502,571 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116381   ⟹   ENSRNOP00000091499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl784,768,254 - 85,271,761 (-)Ensembl
RefSeq Acc Id: NM_001130562   ⟹   NP_001124034
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8786,658,709 - 86,953,879 (-)NCBI
mRatBN7.2784,768,850 - 85,064,057 (-)NCBI
Rnor_6.0792,995,599 - 93,286,757 (-)NCBI
Rnor_5.0793,636,142 - 93,930,174 (-)NCBI
RGSC_v3.4789,785,050 - 90,090,875 (-)RGD
Celera781,608,279 - 81,901,215 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001124034 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM16267 (Get FASTA)   NCBI Sequence Viewer  
  EDM16268 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000063213.4
  ENSRNOP00000068009.2
  ENSRNOP00000091499.1
Reference Protein Sequences
RefSeq Acc Id: NP_001124034   ⟸   NM_001130562
- UniProtKB: A6HRF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000068526   ⟸   ENSRNOT00000077033
RefSeq Acc Id: ENSRNOP00000063213   ⟸   ENSRNOT00000064877
RefSeq Acc Id: ENSRNOP00000068320   ⟸   ENSRNOT00000076327
RefSeq Acc Id: ENSRNOP00000068009   ⟸   ENSRNOT00000076080
RefSeq Acc Id: ENSRNOP00000091499   ⟸   ENSRNOT00000116381
Protein Domains
SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A096MKI3-F1-model_v2 AlphaFold A0A096MKI3 1-203 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561402 AgrOrtholog
BioCyc Gene G2FUF-33407 BioCyc
Ensembl Genes ENSRNOG00000043390 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064877.4 UniProtKB/TrEMBL
  ENSRNOT00000076080.2 UniProtKB/TrEMBL
  ENSRNOT00000116381.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
InterPro Aveugle-like_SAM_dom UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed UniProtKB/TrEMBL
KEGG Report rno:362910 UniProtKB/TrEMBL
NCBI Gene 362910 ENTREZGENE
PANTHER STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 10 UniProtKB/TrEMBL
  STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 12 UniProtKB/TrEMBL
Pfam SAM_2 UniProtKB/TrEMBL
PhenoGen Samd12 PhenoGen
PROSITE SAM_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000043390 RatGTEx
SMART SAM UniProtKB/TrEMBL
Superfamily-SCOP SAM_homology UniProtKB/TrEMBL
UniProt A0A096MJ65_RAT UniProtKB/TrEMBL
  A0A8I6AFQ1_RAT UniProtKB/TrEMBL
  A6HRF5 ENTREZGENE, UniProtKB/TrEMBL
  M0R3J7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-29 Samd12  sterile alpha motif domain containing 12  RGD1561402_predicted  similar to sterile alpha motif domain containing 12 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1561402_predicted  similar to sterile alpha motif domain containing 12 (predicted)  LOC362910  similar to sterile alpha motif domain containing 12  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC362910  similar to sterile alpha motif domain containing 12      Symbol and Name status set to provisional 70820 PROVISIONAL