Mageb6l1 (MAGE family member B6 like 1) - Rat Genome Database

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Gene: Mageb6l1 (MAGE family member B6 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Mageb6l1 (Ensembl: RGD1561382)
Name: MAGE family member B6 like 1 (Ensembl:similar to Smage-1 protein)
RGD ID: 1561382
Description: INVOLVED IN negative regulation of transcription by RNA polymerase II (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC302432; melanoma-associated antigen B4; RGD1561382; similar to Smage-1 protein
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X60,847,227 - 60,848,585 (-)NCBIGRCr8
mRatBN7.2X56,871,259 - 56,872,636 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX56,871,493 - 56,872,608 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X61,215,331 - 61,216,539 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX61,215,304 - 61,216,281 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X61,798,177 - 61,799,385 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X79,430,246 - 79,431,361 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX57,298,554 - 57,299,762 (-)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References

Genomics

Variants

.
Variants in Mageb6l1
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system appendage
High
Medium
Low 3
Below cutoff 1 2 1 1 1 1 1 5 20 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000076333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX56,871,493 - 56,872,608 (-)Ensembl
Rnor_6.0 EnsemblX61,215,304 - 61,216,281 (-)Ensembl
RefSeq Acc Id: XM_228595   ⟹   XP_228595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X60,847,227 - 60,848,585 (-)NCBI
mRatBN7.2X56,871,259 - 56,872,636 (-)NCBI
Rnor_6.0X61,215,331 - 61,216,539 (-)NCBI
Rnor_5.0X61,798,177 - 61,799,385 (-)NCBI
RGSC_v3.4X79,430,246 - 79,431,361 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs XP_228595 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL96021 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000095890.1
Reference Protein Sequences
RefSeq Acc Id: XP_228595   ⟸   XM_228595
- UniProtKB: A6IPZ2 (UniProtKB/TrEMBL),   A0A8I6AQ29 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
MAGE

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2285 BioCyc
Ensembl Genes ENSRNOG00000051281 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000076333.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1200 UniProtKB/TrEMBL
  1.10.10.1210 UniProtKB/TrEMBL
InterPro MAGE UniProtKB/TrEMBL
  MAGE_WH1 UniProtKB/TrEMBL
  MAGE_WH2 UniProtKB/TrEMBL
  MHD_dom UniProtKB/TrEMBL
NCBI Gene 302432 ENTREZGENE
PANTHER MAGE FAMILY MEMBER B2-RELATED UniProtKB/TrEMBL
  PTHR11736 UniProtKB/TrEMBL
Pfam MAGE UniProtKB/TrEMBL
PhenoGen Mageb6l1 PhenoGen
PROSITE MAGE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000051281 RatGTEx
SMART MAGE UniProtKB/TrEMBL
UniProt A0A8I6AQ29 ENTREZGENE, UniProtKB/TrEMBL
  A6IPZ2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Mageb6l1  MAGE family member B6 like 1  RGD1561382  similar to Smage-1 protein  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1561382  similar to Smage-1 protein   RGD1561382_predicted  similar to Smage-1 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561382_predicted  similar to Smage-1 protein (predicted)  LOC302432  similar to Smage-1 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC302432  similar to Smage-1 protein      Symbol and Name status set to provisional 70820 PROVISIONAL