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Gene-Chemical Interaction Annotations
Gene-Chemical Interaction AnnotationsTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | 2,3,7,8-tetrachlorodibenzodioxine | affects expression | EXP | | 6480464 | Tetrachlorodibenzodioxin affects the expression of LRRK2 mRNA | CTD | PMID:22298810 | benzo[a]pyrene | decreases expression | EXP | | 6480464 | Benzo(a)pyrene results in decreased expression of LRRK2 mRNA | CTD | PMID:21839799 | copper(2+) sulfate | affects expression | ISO | RGD:1353141 | 6480464 | Copper Sulfate affects the expression of LRRK2 mRNA | CTD | PMID:19549813 | hydrogen peroxide | increases response to substance | ISO | RGD:1557751 | 6480464 | LRRK2 protein results in increased susceptibility to Hydrogen Peroxide | CTD | PMID:19692353 | maneb | multiple interactions | ISO | RGD:1557751 | 6480464 | [LRRK2 protein mutant form co-treated with Maneb co-treated with Paraquat] results in decreased expression of ACHE mRNA; more ... | CTD | PMID:23017109 | paraquat | decreases response to substance | ISO | RGD:1353141 | 6480464 | LRRK2 protein results in decreased susceptibility to Paraquat | CTD | PMID:19625511 | paraquat | multiple interactions | ISO | RGD:1557751 | 6480464 | [LRRK2 protein mutant form co-treated with Maneb co-treated with Paraquat] results in decreased expression of CDK5RAP1 mRNA; more ... | CTD | PMID:23017109 | pirinixic acid | multiple interactions | ISO | RGD:1353141 | 6480464 | [pirinixic acid binds to and results in increased activity of PPARA protein] which results in decreased expression of LRRK2 mRNA | CTD | PMID:19710929 | pirinixic acid | increases expression | ISO | RGD:1557751 | 6480464 | pirinixic acid results in increased expression of LRRK2 mRNA | CTD | PMID:20813756 | rotenone | decreases response to substance | ISO | RGD:1353141 | 6480464 | LRRK2 protein results in decreased susceptibility to Rotenone | CTD | PMID:19625511 | rotenone | multiple interactions | ISO | RGD:1353141 | 6480464 | PARK2 protein inhibits the reaction [LRRK2 gene polymorphism results in increased susceptibility to Rotenone] | CTD | PMID:19741132 | rotenone | increases response to substance | ISO | RGD:1353141 | 6480464 | LRRK2 gene polymorphism results in increased susceptibility to Rotenone | CTD | PMID:19741132 | rotenone | increases response to substance | ISO | RGD:1353141 | 6480464 | LRRK2 protein results in increased susceptibility to Rotenone | CTD | PMID:19692353 | trimellitic anhydride | increases expression | ISO | RGD:1557751 | 6480464 | trimellitic anhydride results in increased expression of LRRK2 mRNA | CTD | PMID:19042947 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations
Molecular Pathway Annotations| External Database Links | |
| KEGG Pathway | Parkinson's disease |
Disease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway Annotations
References - curated| 1. |
Aasly JO, etal., Mov Disord. 2010 Oct 15;25(13):2156-63. |
| 2. |
Biskup S, etal., Ann Neurol. 2006 Nov;60(5):557-69. |
| 3. |
Brockmann K, etal., Mov Disord. 2011 Oct 11. doi: 10.1002/mds.23991. |
| 4. |
Chen L, etal., Parkinsonism Relat Disord. 2011 May;17(4):291-2. Epub 2010 Dec 14. |
| 5. |
Lee BD, etal., Nat Med. 2010 Sep;16(9):998-1000. Epub 2010 Aug 22. |
| 6. |
Lin CH, etal., Parkinsonism Relat Disord. 2011 Feb;17(2):84-8. Epub 2010 Dec 16. |
| 7. |
Liu Z, etal., Nat Immunol. 2011 Oct 9. doi: 10.1038/ni.2113. |
| 8. |
Miklossy J, etal., Acta Neuropathol. 2007 Sep;114(3):243-54. Epub 2007 Jul 17. |
| 9. |
Nakamura N, etal., DNA Res. 2006 Aug 31;13(4):169-83. |
| 10. |
Ortiz-Ortiz MA, etal., Neurosci Lett. 2010 Jan 4;468(2):120-4. Epub 2009 Oct 30. |
| 11. |
Pipeline to import KEGG annotations from KEGG into RGD Pathway Ontology |
| 12. |
RGD automated data pipeline |
| 13. |
RGD automated import pipeline for gene-chemical interactions |
| 14. |
RGD Automated Pipelines |
| 15. |
RGD comprehensive gene curation |
| 16. |
Ruiz-Martinez J, etal., Mov Disord. 2010 Oct 30;25(14):2340-5. |
| 17. |
Saunders-Pullman R, etal., Mov Disord. 2010 Nov 15;25(15):2536-41. |
| 18. |
Seki N, etal., J Hum Genet. 2011 Sep;56(9):671-5. doi: 10.1038/jhg.2011.79. Epub 2011 Jul 28. |
| 19. |
Shtilbans A, etal., Amyotroph Lateral Scler. 2011 Jul;12(4):250-6. Epub 2011 Mar 4. |
| 20. |
Sierra M, etal., Mov Disord. 2011 Sep 27. doi: 10.1002/mds.23965. |
| 21. |
Strausberg RL, etal., Proc Natl Acad Sci U S A 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
| 22. |
Vijayan B, etal., Neurol India. 2011 Mar-Apr;59(2):157-60. |
| 23. |
Vitte J, etal., J Neuropathol Exp Neurol. 2010 Sep;69(9):959-72. |
References - uncurated
RGD Disease Portals| Lrrk2 has been annotated in the following RGD Disease Portals. |
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Comparative Map Data| Lrrk2 (Rattus norvegicus) |
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| LRRK2 (Homo sapiens) |
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| Lrrk2 (Mus musculus) |
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Position Markers| D7Rat6 |
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| RH138644 |
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QTLs in Region (RGSC Genome Assembly v3.4)| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
Nucleotide Sequences| Nucleotide RefSeqs | NM_001191789 | (Get FASTA) | Search GEO for Microarray Profiles |
| GenBank Nucleotide | AABR06052418 | (Get FASTA) | Search GEO for Microarray Profiles |
| AABR06052419 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AABR06052420 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01052275 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01052276 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01052277 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01052278 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01052279 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01052280 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01052281 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AC112081 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC091422 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC168217 | (Get FASTA) | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | XM_001057114 | ||||||||||
| RefSeq Status: | |||||||||||
| Type: | CODING | ||||||||||
| Position: |
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| RefSeq Acc Id: | XM_235581 | ||||||||||
| RefSeq Status: | |||||||||||
| Type: | CODING | ||||||||||
| Position: |
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| RefSeq Acc Id: | NM_001191789 | ||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||
| Type: | CODING | ||||||||||
| Protein Acc Id: | NP_001178718 | ||||||||||
| Position: |
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Protein Sequences| Protein RefSeqs | NP_001178718 | (Get FASTA) |
| GenBank Protein | AAH91422 | (Get FASTA) |
| AAI68217 | (Get FASTA) |
Strain Sequence Variants
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External Database Links| Database | Acc Id | Source(s) |
| Ensembl Genes | ENSRNOG00000004048 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000005438 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000005438 | ENTREZGENE, UniProtKB/TrEMBL |
| Entrez Gene | 300160 | ENTREZGENE |
| Gene3D-CATH | 0.10 | UniProtKB/TrEMBL |
| 0.20 | UniProtKB/TrEMBL | |
| WD40/YVTN_repeat-like | UniProtKB/TrEMBL | |
| HomoloGene Group ID | 18982 | ENTREZGENE |
| IMAGE_CLONE | IMAGE:7365592 | IMAGE-MGC_LOAD |
| InterPro | Ankyrin_rpt-contain_dom | UniProtKB/TrEMBL |
| ARM-like | UniProtKB/TrEMBL | |
| ARM-type_fold | UniProtKB/TrEMBL | |
| Kinase-like_dom | UniProtKB/TrEMBL | |
| Leu-rich_rpt | UniProtKB/TrEMBL | |
| Leu-rich_rpt_4 | UniProtKB/TrEMBL | |
| MIRO-like | UniProtKB/TrEMBL | |
| Prot_kinase_cat_dom | UniProtKB/TrEMBL | |
| Protein_kinase_ATP_BS | UniProtKB/TrEMBL | |
| ROC_GTPase | UniProtKB/TrEMBL | |
| Ser/Thr_kinase_AS | UniProtKB/TrEMBL | |
| Small_GTP-bd_dom | UniProtKB/TrEMBL | |
| Small_GTPase | UniProtKB/TrEMBL | |
| WD40/YVTN_repeat-like_dom | UniProtKB/TrEMBL | |
| WD40_repeat | UniProtKB/TrEMBL | |
| WD40_repeat_dom | UniProtKB/TrEMBL | |
| IPI | IPI00361495 | UniProtKB/TrEMBL |
| KEGG Report | rno:300160 | ENTREZGENE |
| MGC_CLONE | MGC:109585 | IMAGE-MGC_LOAD |
| Pfam | LRR_1 | UniProtKB/TrEMBL |
| LRR_4 | UniProtKB/TrEMBL | |
| Miro | UniProtKB/TrEMBL | |
| Pkinase | UniProtKB/TrEMBL | |
| PRINTS | RASTRNSFRMNG | UniProtKB/TrEMBL |
| PROSITE | LRR | UniProtKB/TrEMBL |
| PROTEIN_KINASE_ATP | UniProtKB/TrEMBL | |
| PROTEIN_KINASE_DOM | UniProtKB/TrEMBL | |
| PROTEIN_KINASE_ST | UniProtKB/TrEMBL | |
| ROC | UniProtKB/TrEMBL | |
| SMART | WD40 | UniProtKB/TrEMBL |
| Superfamily-SCOP | ARM-type_fold | UniProtKB/TrEMBL |
| Kinase_like | UniProtKB/TrEMBL | |
| WD40_like | UniProtKB/TrEMBL | |
| TIGRFAMs | small_GTP | UniProtKB/TrEMBL |
| UniGene | Rn.213971 | ENTREZGENE |
| UniProt | F1LNJ1_RAT | UniProtKB/TrEMBL |
| Q5BJM3_RAT | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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| 2006-03-30 | Lrrk2 | leucine-rich repeat kinase 2 | Symbol and Name status set to approved | 10779 | APPROVED | ||
| 2006-02-09 | Lrrk2 | leucine-rich repeat kinase 2 | Symbol and Name status set to provisional | 1724 | PROVISIONAL |
| More on Lrrk2 | |
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Entrez Gene |
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Ensembl Gene |
![]() | Genome Browser |
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NCBI Map Viewer |
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Vista |
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Vista + UCSC |
| RGD Object Information | |
| RGD ID: | 1561168 |
| Created: | 2006-02-09 |
| Species: | Rattus norvegicus |
| Last Modified: | 2013-04-16 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.




