Pced1b (PC-esterase domain containing 1B) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Pced1b (PC-esterase domain containing 1B) Rattus norvegicus
Analyze
Symbol: Pced1b
Name: PC-esterase domain containing 1B
RGD ID: 1561028
Description: Orthologous to human PCED1B (PC-esterase domain containing 1B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Fam113b; family with sequence similarity 113, member B; hypothetical protein LOC315283; LOC102551484; LOC315283; MGC124719; PC-esterase domain-containing protein 1B; RGD1561028; similar to MGC47262 protein; translation initiation factor IF-2-like; uncharacterized LOC102551484
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87130,273,531 - 130,451,727 (+)NCBIGRCr8
mRatBN7.27128,394,388 - 128,528,231 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7128,391,319 - 128,528,231 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7130,191,814 - 130,325,394 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07132,417,346 - 132,550,921 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07132,361,405 - 132,463,291 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07138,707,426 - 138,846,127 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7138,707,426 - 138,846,123 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07138,445,301 - 138,468,401 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47136,003,629 - 136,105,935 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7124,915,764 - 125,017,288 (+)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Pced1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87130,273,531 - 130,451,727 (+)NCBIGRCr8
mRatBN7.27128,394,388 - 128,528,231 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7128,391,319 - 128,528,231 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7130,191,814 - 130,325,394 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07132,417,346 - 132,550,921 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07132,361,405 - 132,463,291 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07138,707,426 - 138,846,127 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7138,707,426 - 138,846,123 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07138,445,301 - 138,468,401 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47136,003,629 - 136,105,935 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7124,915,764 - 125,017,288 (+)NCBICelera
Cytogenetic Map7q36NCBI
PCED1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381247,079,621 - 47,236,660 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1247,079,603 - 47,236,662 (+)EnsemblGRCh38hg38GRCh38
GRCh371247,473,404 - 47,630,443 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361245,896,319 - 45,916,710 (+)NCBINCBI36Build 36hg18NCBI36
Celera1246,407,103 - 46,427,485 (+)NCBICelera
Cytogenetic Map12q13.11NCBI
HuRef1244,504,308 - 44,661,267 (+)NCBIHuRef
CHM1_11247,438,770 - 47,596,027 (+)NCBICHM1_1
T2T-CHM13v2.01247,040,396 - 47,197,436 (+)NCBIT2T-CHM13v2.0
Pced1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391597,143,563 - 97,283,574 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1597,144,988 - 97,283,561 (+)EnsemblGRCm39 Ensembl
GRCm381597,246,973 - 97,385,693 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1597,247,107 - 97,385,680 (+)EnsemblGRCm38mm10GRCm38
MGSCv371597,077,538 - 97,216,124 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361597,075,141 - 97,213,710 (+)NCBIMGSCv36mm8
Celera1599,413,319 - 99,523,000 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1552.91NCBI
Pced1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555006,278,897 - 6,280,228 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555006,247,689 - 6,280,542 (+)NCBIChiLan1.0ChiLan1.0
PCED1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21046,930,899 - 47,087,757 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11246,926,849 - 47,084,391 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01241,496,557 - 41,653,299 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11242,369,326 - 42,371,238 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1242,369,622 - 42,370,920 (-)Ensemblpanpan1.1panPan2
PCED1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1277,352,609 - 7,380,663 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2738,928,297 - 38,943,326 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0277,420,426 - 7,448,744 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl277,433,663 - 7,574,336 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1277,368,670 - 7,377,427 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0277,397,821 - 7,425,926 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02739,171,283 - 39,186,314 (+)NCBIUU_Cfam_GSD_1.0
Pced1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494567,849,712 - 67,913,670 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365125,291,516 - 5,315,118 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100626390
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.115115,351,244 - 115,355,466 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215127,459,310 - 127,461,020 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PCED1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11143,284,788 - 43,529,721 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1143,436,921 - 43,438,219 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037202,920,442 - 203,104,971 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pced1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248164,926,441 - 5,184,520 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pced1b
1324 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:294
Count of miRNA genes:173
Interacting mature miRNAs:200
Transcripts:ENSRNOT00000037874
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat

Markers in Region
D7Got132  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23139,923,892 - 139,924,930 (+)MAPPERmRatBN7.2
mRatBN7.27128,457,900 - 128,458,049 (+)MAPPERmRatBN7.2
Rnor_6.07138,771,069 - 138,771,217NCBIRnor6.0
Rnor_6.03146,868,692 - 146,869,729NCBIRnor6.0
Rnor_5.07138,393,755 - 138,393,903UniSTSRnor5.0
Rnor_5.03153,221,969 - 153,223,006UniSTSRnor5.0
RGSC_v3.43141,742,236 - 141,743,273UniSTSRGSC3.4
RGSC_v3.47136,034,861 - 136,035,010RGDRGSC3.4
RGSC_v3.47136,034,862 - 136,035,010UniSTSRGSC3.4
RGSC_v3.17136,111,299 - 136,111,447RGD
Celera7124,947,348 - 124,947,511UniSTS
Celera3138,683,899 - 138,684,936UniSTS
RH 3.4 Map71096.2RGD
RH 3.4 Map71096.2UniSTS
RH 2.0 Map7781.9RGD
Cytogenetic Map7q35-q36UniSTS
BE101987  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27128,502,652 - 128,502,840 (+)MAPPERmRatBN7.2
Rnor_6.07138,818,058 - 138,818,245NCBIRnor6.0
Rnor_5.07138,442,968 - 138,443,155UniSTSRnor5.0
RGSC_v3.47136,079,476 - 136,079,663UniSTSRGSC3.4
Celera7124,991,696 - 124,991,883UniSTS
RH 3.4 Map71095.3UniSTS
Cytogenetic Map7q35-q36UniSTS
RH138777  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27128,528,034 - 128,528,191 (+)MAPPERmRatBN7.2
Rnor_6.07138,845,931 - 138,846,087NCBIRnor6.0
Rnor_5.07138,468,205 - 138,468,361UniSTSRnor5.0
RGSC_v3.47136,105,739 - 136,105,895UniSTSRGSC3.4
Celera7125,017,092 - 125,017,248UniSTS
RH 3.4 Map71096.0UniSTS
Cytogenetic Map7q35-q36UniSTS
AU049147  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27128,457,905 - 128,458,045 (+)MAPPERmRatBN7.2
Rnor_6.07138,771,074 - 138,771,213NCBIRnor6.0
Rnor_5.07138,393,760 - 138,393,899UniSTSRnor5.0
RGSC_v3.47136,034,867 - 136,035,006UniSTSRGSC3.4
Celera7124,947,353 - 124,947,507UniSTS
Celera7124,947,353 - 124,947,465UniSTS
Cytogenetic Map7q35-q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 14 12 9 12 2 2 30 8
Low 1 43 43 29 10 29 7 10 72 33 11 3 7
Below cutoff 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001039454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC112322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000009199   ⟹   ENSRNOP00000009199
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7128,391,319 - 128,528,231 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000037874   ⟹   ENSRNOP00000035198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7128,394,753 - 128,528,231 (+)Ensembl
Rnor_6.0 Ensembl7138,707,426 - 138,846,123 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098442   ⟹   ENSRNOP00000078186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7128,518,168 - 128,528,228 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105071   ⟹   ENSRNOP00000097051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7128,393,972 - 128,528,231 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107243   ⟹   ENSRNOP00000091999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7128,400,020 - 128,528,231 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109503   ⟹   ENSRNOP00000077090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7128,516,570 - 128,528,231 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110065   ⟹   ENSRNOP00000092537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7128,505,726 - 128,528,231 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111212   ⟹   ENSRNOP00000095524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7128,518,638 - 128,528,231 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118269   ⟹   ENSRNOP00000079128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7128,427,300 - 128,528,231 (+)Ensembl
RefSeq Acc Id: NM_001039454   ⟹   NP_001034543
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,273,940 - 130,407,364 (+)NCBI
mRatBN7.27128,394,794 - 128,528,231 (+)NCBI
Rnor_6.07138,707,426 - 138,846,127 (+)NCBI
Rnor_5.07138,445,301 - 138,468,401 (+)NCBI
RGSC_v3.47136,003,629 - 136,105,935 (+)RGD
Celera7124,915,764 - 125,017,288 (+)RGD
Sequence:
RefSeq Acc Id: XM_008765737   ⟹   XP_008763959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,397,194 - 130,407,352 (+)NCBI
mRatBN7.27128,518,060 - 128,528,231 (+)NCBI
Rnor_6.07138,835,723 - 138,846,127 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765738   ⟹   XP_008763960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,397,194 - 130,407,352 (+)NCBI
mRatBN7.27128,518,060 - 128,528,231 (+)NCBI
Rnor_6.07138,835,723 - 138,846,127 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765740   ⟹   XP_008763962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,273,531 - 130,407,352 (+)NCBI
mRatBN7.27128,394,388 - 128,528,231 (+)NCBI
Rnor_6.07138,820,464 - 138,846,127 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765742   ⟹   XP_008763964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,398,022 - 130,407,352 (+)NCBI
mRatBN7.27128,518,902 - 128,528,231 (+)NCBI
Rnor_6.07138,835,723 - 138,846,127 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063263660   ⟹   XP_063119730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,273,531 - 130,407,352 (+)NCBI
RefSeq Acc Id: XM_063263661   ⟹   XP_063119731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,273,531 - 130,407,352 (+)NCBI
RefSeq Acc Id: XM_063263662   ⟹   XP_063119732
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,273,871 - 130,407,352 (+)NCBI
RefSeq Acc Id: XM_063263663   ⟹   XP_063119733
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,394,688 - 130,407,352 (+)NCBI
RefSeq Acc Id: XM_063263664   ⟹   XP_063119734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,398,022 - 130,407,352 (+)NCBI
RefSeq Acc Id: XM_063263665   ⟹   XP_063119735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,394,688 - 130,407,352 (+)NCBI
RefSeq Acc Id: XM_063263666   ⟹   XP_063119736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,394,688 - 130,407,352 (+)NCBI
RefSeq Acc Id: XM_063263667   ⟹   XP_063119737
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,394,688 - 130,407,352 (+)NCBI
RefSeq Acc Id: XM_063263668   ⟹   XP_063119738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,274,299 - 130,451,727 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001034543 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763959 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763960 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763962 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763964 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119730 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119731 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119732 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119733 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119734 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119735 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119736 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119737 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119738 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI12323 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009199
  ENSRNOP00000009199.3
  ENSRNOP00000035198
  ENSRNOP00000035198.4
  ENSRNOP00000077090.1
  ENSRNOP00000078186
  ENSRNOP00000078186.1
  ENSRNOP00000079128.1
  ENSRNOP00000091999.1
  ENSRNOP00000092537.1
  ENSRNOP00000095524
  ENSRNOP00000095524.1
  ENSRNOP00000097051.1
  ENSRNOP00055016047
  ENSRNOP00055016048
  ENSRNOP00055016051
  ENSRNOP00055016054
  ENSRNOP00055016058
  ENSRNOP00055016061
  ENSRNOP00055016063
  ENSRNOP00055016065
  ENSRNOP00055016067
  ENSRNOP00060010536
  ENSRNOP00060010538
  ENSRNOP00060010547
  ENSRNOP00060010558
  ENSRNOP00060010579
  ENSRNOP00060010583
  ENSRNOP00060010584
  ENSRNOP00060010587
  ENSRNOP00060010597
  ENSRNOP00065025756
  ENSRNOP00065025758
  ENSRNOP00065025764
  ENSRNOP00065025769
  ENSRNOP00065025772
  ENSRNOP00065025775
  ENSRNOP00065025785
GenBank Protein Q2M1K5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001034543   ⟸   NM_001039454
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008763962   ⟸   XM_008765740
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008763959   ⟸   XM_008765737
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y736 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763960   ⟸   XM_008765738
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008763964   ⟸   XM_008765742
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000035198   ⟸   ENSRNOT00000037874
RefSeq Acc Id: ENSRNOP00000091999   ⟸   ENSRNOT00000107243
RefSeq Acc Id: ENSRNOP00000095524   ⟸   ENSRNOT00000111212
RefSeq Acc Id: ENSRNOP00000077090   ⟸   ENSRNOT00000109503
RefSeq Acc Id: ENSRNOP00000092537   ⟸   ENSRNOT00000110065
RefSeq Acc Id: ENSRNOP00000078186   ⟸   ENSRNOT00000098442
RefSeq Acc Id: ENSRNOP00000097051   ⟸   ENSRNOT00000105071
RefSeq Acc Id: ENSRNOP00000009199   ⟸   ENSRNOT00000009199
RefSeq Acc Id: ENSRNOP00000079128   ⟸   ENSRNOT00000118269
RefSeq Acc Id: XP_063119730   ⟸   XM_063263660
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063119731   ⟸   XM_063263661
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063119732   ⟸   XM_063263662
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063119738   ⟸   XM_063263668
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063119733   ⟸   XM_063263663
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063119735   ⟸   XM_063263665
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063119736   ⟸   XM_063263666
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063119737   ⟸   XM_063263667
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063119734   ⟸   XM_063263664
- Peptide Label: isoform X3
- UniProtKB: Q2M1K5 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q2M1K5-F1-model_v2 AlphaFold Q2M1K5 1-432 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695612
Promoter ID:EPDNEW_R6137
Type:multiple initiation site
Name:Pced1b_1
Description:PC-esterase domain containing 1B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07138,707,413 - 138,707,473EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561028 AgrOrtholog
BioCyc Gene G2FUF-32200 BioCyc
Ensembl Genes ENSRNOG00000022807 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055011721 UniProtKB/Swiss-Prot
  ENSRNOG00060008326 UniProtKB/Swiss-Prot
  ENSRNOG00065019179 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000009199.4 UniProtKB/Swiss-Prot
  ENSRNOT00000037874 ENTREZGENE
  ENSRNOT00000037874.6 UniProtKB/Swiss-Prot
  ENSRNOT00000098442.1 UniProtKB/TrEMBL
  ENSRNOT00000105071.1 UniProtKB/Swiss-Prot
  ENSRNOT00000107243.1 UniProtKB/Swiss-Prot
  ENSRNOT00000109503.1 UniProtKB/Swiss-Prot
  ENSRNOT00000110065.1 UniProtKB/Swiss-Prot
  ENSRNOT00000111212.1 UniProtKB/Swiss-Prot
  ENSRNOT00000118269.1 UniProtKB/Swiss-Prot
  ENSRNOT00055019909 UniProtKB/Swiss-Prot
  ENSRNOT00055019911 UniProtKB/Swiss-Prot
  ENSRNOT00055019915 UniProtKB/Swiss-Prot
  ENSRNOT00055019918 UniProtKB/Swiss-Prot
  ENSRNOT00055019924 UniProtKB/Swiss-Prot
  ENSRNOT00055019927 UniProtKB/Swiss-Prot
  ENSRNOT00055019930 UniProtKB/Swiss-Prot
  ENSRNOT00055019934 UniProtKB/Swiss-Prot
  ENSRNOT00055019937 UniProtKB/Swiss-Prot
  ENSRNOT00060013817 UniProtKB/Swiss-Prot
  ENSRNOT00060013820 UniProtKB/Swiss-Prot
  ENSRNOT00060013831 UniProtKB/Swiss-Prot
  ENSRNOT00060013842 UniProtKB/Swiss-Prot
  ENSRNOT00060013870 UniProtKB/Swiss-Prot
  ENSRNOT00060013872 UniProtKB/Swiss-Prot
  ENSRNOT00060013873 UniProtKB/Swiss-Prot
  ENSRNOT00060013876 UniProtKB/Swiss-Prot
  ENSRNOT00060013886 UniProtKB/Swiss-Prot
  ENSRNOT00065032248 UniProtKB/Swiss-Prot
  ENSRNOT00065032250 UniProtKB/Swiss-Prot
  ENSRNOT00065032256 UniProtKB/Swiss-Prot
  ENSRNOT00065032261 UniProtKB/Swiss-Prot
  ENSRNOT00065032264 UniProtKB/Swiss-Prot
  ENSRNOT00065032267 UniProtKB/Swiss-Prot
  ENSRNOT00065032277 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.1110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7936449 IMAGE-MGC_LOAD
InterPro SGNH_hydro_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:315283 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124719 IMAGE-MGC_LOAD
NCBI Gene 315283 ENTREZGENE
PANTHER PC-ESTERASE DOMAIN-CONTAINING PROTEIN 1B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SARCOMA ANTIGEN NY-SAR-23 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pced1b PhenoGen
RatGTEx ENSRNOG00000022807 RatGTEx
  ENSRNOG00055011721 RatGTEx
  ENSRNOG00060008326 RatGTEx
  ENSRNOG00065019179 RatGTEx
Superfamily-SCOP SGNH hydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5Y736 ENTREZGENE, UniProtKB/TrEMBL
  PED1B_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Pced1b  PC-esterase domain containing 1B  LOC102551484  uncharacterized LOC102551484  Data merged from RGD:7669791 737654 PROVISIONAL
2013-12-18 LOC102551484  uncharacterized LOC102551484      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-16 Pced1b  PC-esterase domain containing 1B  Fam113b  family with sequence similarity 113, member B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Fam113b  family with sequence similarity 113, member B  RGD1561028  similar to MGC47262 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 RGD1561028  similar to MGC47262 protein  LOC315283    Symbol updated 1299863 APPROVED
2006-02-09 LOC315283  similar to MGC47262 protein      Symbol and Name status set to provisional 70820 PROVISIONAL