Slc9a9 (solute carrier family 9 member A9)

Gene: Slc9a9 (solute carrier family 9 member A9) Rattus norvegicus

Analyze

Symbol:

Slc9a9

Name:

solute carrier family 9 member A9

RGD ID:

1560736

Description:

Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in several processes, including monoatomic cation transmembrane transport; phagosome maturation; and regulation of intracellular pH. Predicted to be located in cytoplasmic vesicle. Predicted to be active in plasma membrane and recycling endosome. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human SLC9A9 (solute carrier family 9 member A9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC300908; LOC363115; Na(+)/H(+) exchanger 9; NHE-9; RGD1560736; similar to solute carrier family 9 (sodium/hydrogen exchanger), isoform 9; sodium/hydrogen exchanger 9; solute carrier family 9 (sodium/hydrogen exchanger); solute carrier family 9 (sodium/hydrogen exchanger), isoform 9; solute carrier family 9 member 9; solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC9A9 (solute carrier family 9 member A9)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Slc9a9 (solute carrier family 9 (sodium/hydrogen exchanger), member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc9a9 (solute carrier family 9 member A9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC9A9 (solute carrier family 9 member A9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC9A9 (solute carrier family 9 member A9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc9a9 (solute carrier family 9 member A9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC9A9 (solute carrier family 9 member A9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC9A9 (solute carrier family 9 member A9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc9a9 (solute carrier family 9 member A9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	HMGB2 (high mobility group box 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SLC9A9 (solute carrier family 9 member A9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc9a9 (solute carrier family 9 (sodium/hydrogen exchanger), member 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	NHX1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Nhe3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	nhx-5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc9a9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	104,112,279 - 104,675,944 (+)	NCBI		GRCr8
mRatBN7.2	8	95,232,889 - 95,797,262 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	95,232,905 - 95,796,318 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	100,894,442 - 101,454,588 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	99,093,744 - 99,653,850 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	96,937,860 - 97,492,801 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	102,304,095 - 103,022,619 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	102,304,095 - 103,022,619 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	101,786,869 - 101,923,361 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	8	102,104,238 - 102,486,426 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	99,736,831 - 100,324,858 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	99,756,279 - 99,825,026 (+)	NCBI
Celera	8	94,706,240 - 95,249,454 (+)	NCBI		Celera
Cytogenetic Map	8	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISS)

autistic disorder (ISO)

colorectal cancer (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3-Iodothyronamine (ISO)

3-methylcholanthrene (ISO)

4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

carbamazepine (ISO)

CGP 52608 (ISO)

cyclosporin A (ISO)

DDT (EXP)

dexamethasone (ISO)

doxorubicin (ISO)

endosulfan (EXP,ISO)

FR900359 (ISO)

glutathione (EXP)

medroxyprogesterone acetate (ISO)

methotrexate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

potassium dichromate (ISO)

rac-lactic acid (ISO)

rotenone (ISO)

silicon dioxide (ISO)

sodium dodecyl sulfate (ISO)

temozolomide (ISO)

tetrachloromethane (EXP,ISO)

trichloroethene (EXP)

triphenyl phosphate (EXP)

troglitazone (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

defense response to bacterium (ISO)

phagosome maturation (ISO)

potassium ion transmembrane transport (IBA,ISO,ISS)

proton transmembrane transport (IEA)

regulation of intracellular pH (IBA,ISO,ISS)

sodium ion import across plasma membrane (IBA)

sodium ion transmembrane transport (ISO,ISS)

Cellular Component

early endosome (ISO)

early endosome membrane (IEA)

early phagosome (ISO)

late endosome membrane (IEA)

phagocytic vesicle membrane (ISO)

plasma membrane (IBA,ISO)

recycling endosome (IBA,ISO)

recycling endosome membrane (ISO)

Molecular Function

potassium:proton antiporter activity (IBA,ISO,ISS)

protein binding (IPI,ISO)

sodium:proton antiporter activity (IBA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	SLC9A9 mutations, gene expression, and protein-protein interactions in rat models of attention-deficit/hyperactivity disorder.	Zhang-James Y, etal., Am J Med Genet B Neuropsychiatr Genet. 2011 Dec;156B(7):835-43. doi: 10.1002/ajmg.b.31229. Epub 2011 Aug 19.

Additional References at PubMed

PMID:15522866	PMID:22777493

Genomics

Comparative Map Data

Slc9a9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	104,112,279 - 104,675,944 (+)	NCBI		GRCr8
mRatBN7.2	8	95,232,889 - 95,797,262 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	95,232,905 - 95,796,318 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	100,894,442 - 101,454,588 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	99,093,744 - 99,653,850 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	96,937,860 - 97,492,801 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	102,304,095 - 103,022,619 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	102,304,095 - 103,022,619 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	101,786,869 - 101,923,361 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	8	102,104,238 - 102,486,426 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	99,736,831 - 100,324,858 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	99,756,279 - 99,825,026 (+)	NCBI
Celera	8	94,706,240 - 95,249,454 (+)	NCBI		Celera
Cytogenetic Map	8	q31	NCBI

SLC9A9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	143,265,222 - 143,848,468 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	143,265,222 - 143,848,485 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	142,984,064 - 143,567,310 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	144,466,754 - 145,049,979 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	144,466,762 - 145,049,987	NCBI
Celera	3	141,407,434 - 141,990,172 (-)	NCBI		Celera
Cytogenetic Map	3	q24	NCBI
HuRef	3	140,356,277 - 140,939,100 (-)	NCBI		HuRef
CHM1_1	3	142,947,047 - 143,530,815 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	146,012,562 - 146,595,091 (-)	NCBI		T2T-CHM13v2.0

Slc9a9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	94,551,945 - 95,112,505 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	94,551,962 - 95,112,498 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	94,669,557 - 95,230,453 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	94,669,909 - 95,230,445 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	94,570,311 - 95,130,871 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	94,479,270 - 95,039,797 (+)	NCBI		MGSCv36	mm8
Celera	9	94,219,657 - 94,782,256 (+)	NCBI		Celera
Cytogenetic Map	9	E3.3	NCBI
cM Map	9	49.22	NCBI

Slc9a9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955508	2,090,609 - 2,670,240 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955508	2,060,078 - 2,671,792 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC9A9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	141,169,708 - 141,752,339 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	141,174,439 - 141,755,370 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	140,292,336 - 140,875,991 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	147,882,700 - 148,466,360 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	147,980,965 - 148,466,151 (-)	Ensembl	panpan1.1		panPan2

SLC9A9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	38,816,387 - 39,471,678 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	38,817,875 - 39,355,217 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	38,779,301 - 39,215,254 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	39,347,537 - 39,885,943 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	39,347,545 - 39,883,515 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	39,031,380 - 39,569,460 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	39,112,236 - 39,650,331 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	39,350,485 - 39,888,833 (-)	NCBI		UU_Cfam_GSD_1.0

Slc9a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	78,104,005 - 78,644,561 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936540	4,845,212 - 5,384,170 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936540	4,843,798 - 5,384,305 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC9A9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	83,962,618 - 84,502,327 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	83,962,613 - 84,636,878 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	91,734,511 - 92,260,592 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC9A9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	46,781,220 - 47,362,031 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	46,781,271 - 47,360,525 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	19,706,019 - 20,293,405 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc9a9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	19,902,620 - 20,514,160 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	19,902,504 - 20,514,138 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc9a9
3138 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	67
Count of miRNA genes:	59
Interacting mature miRNAs:	63
Transcripts:	ENSRNOT00000011358
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	43296169	98968765	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	43296169	98968765	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	43296169	98968765	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	43296169	98968765	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	43296169	98968765	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	43296169	98968765	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	46531639	119088626	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	8	46531639	119088626	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	8	46531639	119088626	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088626	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	46531722	99083736	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	51351728	107062046	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	54043744	98968765	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	54237644	99103503	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	54259986	100382532	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	61290298	119084929	Rat
631653	Bp125	Blood pressure QTL 125	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	66142385	111142385	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	69349194	112783834	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	70513503	118219066	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	71888757	116888757	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	71888757	116888757	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	71888757	116888757	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	71888757	116888757	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	73473045	118473045	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	76468691	121468691	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	82460758	122812818	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	89265192	114019816	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	93535351	123900184	Rat
1358893	Bp263	Blood pressure QTL 263	5.01		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
1358903	Bp252	Blood pressure QTL 252	7	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
738014	Anxrr15	Anxiety related response QTL 15	3.6	0.005	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	95718998	123900184	Rat
2300182	Bmd56	Bone mineral density QTL 56	5.4		femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	95718998	123900184	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			10	2	19	2			7		5	11
Low	3	43	47	39		39	8	11	67	35	34		8
Below cutoff											2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000011358 ⟹ ENSRNOP00000011358

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	95,232,905 - 95,796,318 (+)	Ensembl
Rnor_6.0 Ensembl	8	102,304,095 - 103,022,619 (+)	Ensembl

RefSeq Acc Id:

NM_001271438 ⟹ NP_001258367

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	104,112,535 - 104,675,944 (+)	NCBI
mRatBN7.2	8	95,232,905 - 95,796,318 (+)	NCBI
Rnor_6.0	8	102,304,095 - 103,022,619 (+)	NCBI
Rnor_5.0	8	101,786,869 - 101,923,361 (+)	NCBI
Rnor_5.0	8	102,104,238 - 102,486,426 (+)	NCBI
Celera	8	94,706,240 - 95,249,454 (+)	NCBI

Sequence:

show sequence

AGAAGCCCGTCTGAATGCTAAGCCATCTGAATGCTTGTGAAGTAGCAACAAAGTAGCAGCGTTT
ATTCTGAAATTCTGTGGGCGCCAGTCTGTCCTAGGCAACCCTCATCGAAGTGCTCATCCCTTGC
CCAGGGATTTCTCTGAGCATCACGGTGGAGGGGAGAATGGCGGGGCAGCTTCGGCTTACGTCAG
GGAAGGATGAAGATCATTTTCAACACCAGGGAGCAGTGGAGCTACTCGCGTTTAATTTTTTGCT
CATCCTTACCATTTTAACAATCTGGTTATTTAAAAATCATCGATTCCGCTTCTTGCATGAGACT
GGAGGGGCGATGGTGTATGGCCTCATAATGGGATTAATTTTGCGATATGCCACAGCGCCAACTG
ATATCGATAGTGGCACTGTCTACAATTGTGGAAAGTTACTCTTCAGCCCATCAACTCTACTAGT
CAACATCACTGACCAAGTTTATGAATACAAGTACCAGAGAGAAATCAACCAGCACAACATCAGC
CCCCACCAAGGCAATGCTATACTGGAGAAGATGACGTTTGACCCGGAAATCTTCTTCAATGTCT
TACTACCTCCCATTATATTTCATGCAGGATACAGTCTGAAGAAGAGGCACTTTTTTCAAAACTT
GGGATCCATTTTAACGTATGCCTTCTTGGGAACAGCCATCTCCTGTGTGGTCATAGGGTTAATT
ATGTATGGCTTTGTGAAGGCCATGGTGCACGCTGGCCAGCTGAAGAGCGGAGACTTCCACTTCA
CTGACTGTTTGTTTTTTGGTTCACTGATGTCTGCTACAGATCCAGTGACAGTGCTGGCCATTTT
CCATGAGCTACACGTGGACCCTGACCTGTACACACTGCTGTTTGGGGAGAGCGTGCTGAATGAT
GCGGTGGCCATAGTCCTCACATACTCTATATCCATCTATAGTCCCAAGGAGAATCCCAACGCGT
TTGACACGGCAGCGTTCTTCCAATCTGTGGGCAATTTCCTGGGGATCTTTGCCGGCTCCTTTGC
GATGGGCTCTGCATACGCAGTTGTCACAGCACTGTTGACCAAATTTACCAAGCTCCGTGAGTTC
CCAATGCTGGAGACAGGCCTGTTTTTCCTGCTTTCTTGGAGTGCCTTCCTGTCTGCCGAGGCCG
CCGGCTTAACAGGCATAGTTGCGGTTCTCTTCTGTGGAGTCACTCAAGCACATTACACCTACAA
CAATCTGTCATCGGATTCCAAACTGAGGACCAAACAGCTGTTTGAATTTATGAACTTCCTGGCT
GAGAACGTCATCTTCTGCTACATGGGCCTGGCTCTGTTCACCTTTCAGAATCACATTTTCAATG
CTCTTTTTATACTCGGAGCCTTTCTAGCAATTTTTGTCGCCAGGGCCTGCAACATTTACCCCCT
CTCCTTCCTCCTGAATCTGGGCAGAAAGCAGAAGATTCCCTGGAACTTCCAGCACATGATGATG
TTTTCAGGTTTGCGAGGTGCAATTGCCTTCGCCCTGGCCATCCGCAACACGGAATCTCAGCCTA
AACAGATGATGTTCACCACCACACTGCTCCTCGTGTTCTTCACTGTCTGGGTGTTCGGAGGAGG
AACGACCCCCATGCTGACATGGCTTCAGATCAGAGTCGGTGTGGACCTGGATGAAAGTTTGAAG
GAAGAGCCCTCCTCACAGCAGGAAGCAAATAAGGTGGATAAAGACATGACGAAGACAGAGAGTG
CACAGCTCTTCAGGATGTGGTACGGATTTGACCACAAATACCTGAAACCCATCTTAACACATTC
CGGCCCTCCACTGACCACCACGTTGCCGGCATGGTGTGGCCCAGTCTCCAGGCTGCTCACCAGT
CCTCAGGCCTATGGGGAACAACTGAAAGAGGATGATGTGGAATGTATCGTCAACCAAGATGAAC
TCGCCATGAATTACCAGGAGCAGAGCCCCACTTCCAGCAGTCCTGCCACAAAGCTAGCTCTGGA
CCAGAAGTCTTCAGGCCTGACTTTAGGGAAGGAAAACATCTACGAGGGAGACCTCGGCCTCGGA
GGCTATGAACTCAAACTGGAGCAGACTCGGGGTCAACCCCAGATGGACTAATTGGTACAAGTGC
AAACATAACCACATGTAATGCAAGACCACTGAGGAATGCCCACAGCCAAGGAGGTGGTGCAGAA
AGAGACAGAAAGAGTATTAAGAACATAAATTGGACAGAATCAAACCTTATCACATGTATCCTCC
CGTGCCTTCAGAAATGAGAATTCATTATCTTCCCTCTGTATTATGCAACCTCATTTAATTATCT
GACAGCCATTTTTACTGCTGGATTGGGGGCCAGGGGAGTCAGGTCTAGCTGCCATTGGGATGAA
CCATATGTGCTGTGTCTGCAGGGGGCTCCTTCTGTTCCTCAGACAGCTCTCCAGGCCCTTCATG
TGGATTTTGGATTCTATTCCATTAATTATAGAACAGTAATAACATGAAGAAGAAGAAAAAAAAT
CTCCTGAGCATAAATGATGTCTTATCCCTTGACTTGACTCCACTTGTACCAACCATAGGGCTAA
ATGCAGAGCCCAGTGAGTGTTCAGTACCCACTACTGATGGCCTCAGAGAATTCACATCTGTCGG
GGGCCCTGTTGTCCTTGCTGGCACTCTCTCCATACGGTTCTTCCCACTACTCCAAGGAGGTGCT
TGCCTCCAGGTATGTGTATGTTAAGTGCAGGCTCTTGCCAGCTTAAGGAGACTCATTCCAGGGA
AAGCTGGTCTCTTTCCCACATTCTGTGTTTTACTCAAACAGTGAGCCTCTCTTCCTTGTGTGCA
CTGGGACAACAGTGCACAGGTTCCCTCTGCATGCTGGGAAGTCATGCATGACCCTCCCACATGG
GGGGTTGGGGGGGTTGTGCAGGAGCCCTCACCTTTCCAATTCCAATATGTGTGACTGTTCTGCA
ACAGAGGGGCAAAAAGAATGGGGCTAATGACATGTAGGCCACCCTTAGGCACCAAGGACAAGCA
CCAGTCAGGATCCACGCCCCTTTCCAGAGTGGCTCACCTGCTGCATTGAAGAGACCAACCCAAT
AGCTTTTAATTTAGCTGCATGACTTGTGCCTTTGAAGCCATAAGATACCTCAAGCCTAGCTTCT
CCTGAAATGCAGATGCTCTGTTAGGCTCCAAAGAGCAGGCTTCAGACTTGGGAGCCCAAGACAT
GATAGACTTGCTTTAGAGGGAGATGGAGAATGATTTCTTTCTCAGGCCCAAAGCCTAAAACTAA
TGCATGCTGCACTGAGCACTTCTTAGGCCTTAGACCTGTGGTATCAGGTACCCTGCCTGTGTGT
CTGTTTTCTCGCTTCCAAATAGTAGAAACTGGGAGAAACTTTTATATTCAACTGAGTAAAATCT
TGTCATTTCAGGTAAATAGGGCAAGTAGAAAAGTTTTCTTATTTGACATCATGCTAATAAAATT
TTGTTATGGAGTATGATTGC

hide sequence

RefSeq Acc Id:

XM_063265800 ⟹ XP_063121870

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	104,112,279 - 104,675,937 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258367	(Get FASTA)	NCBI Sequence Viewer
	XP_063121870	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D4A7H1	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011358
	ENSRNOP00000011358.6
	ENSRNOP00055023759
	ENSRNOP00060015838

RefSeq Acc Id:

NP_001258367 ⟸ NM_001271438

- UniProtKB:

D4A7H1 (UniProtKB/TrEMBL), A6I251 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGQLRLTSGKDEDHFQHQGAVELLAFNFLLILTILTIWLFKNHRFRFLHETGGAMVYGLIMGL
ILRYATAPTDIDSGTVYNCGKLLFSPSTLLVNITDQVYEYKYQREINQHNISPHQGNAILEKMT
FDPEIFFNVLLPPIIFHAGYSLKKRHFFQNLGSILTYAFLGTAISCVVIGLIMYGFVKAMVHAG
QLKSGDFHFTDCLFFGSLMSATDPVTVLAIFHELHVDPDLYTLLFGESVLNDAVAIVLTYSISI
YSPKENPNAFDTAAFFQSVGNFLGIFAGSFAMGSAYAVVTALLTKFTKLREFPMLETGLFFLLS
WSAFLSAEAAGLTGIVAVLFCGVTQAHYTYNNLSSDSKLRTKQLFEFMNFLAENVIFCYMGLAL
FTFQNHIFNALFILGAFLAIFVARACNIYPLSFLLNLGRKQKIPWNFQHMMMFSGLRGAIAFAL
AIRNTESQPKQMMFTTTLLLVFFTVWVFGGGTTPMLTWLQIRVGVDLDESLKEEPSSQQEANKV
DKDMTKTESAQLFRMWYGFDHKYLKPILTHSGPPLTTTLPAWCGPVSRLLTSPQAYGEQLKEDD
VECIVNQDELAMNYQEQSPTSSSPATKLALDQKSSGLTLGKENIYEGDLGLGGYELKLEQTRGQ
PQMD

hide sequence

RefSeq Acc Id:

ENSRNOP00000011358 ⟸ ENSRNOT00000011358

RefSeq Acc Id:	XP_063121870 ⟸ XM_063265800
- Peptide Label:	isoform X1

Protein Domains

Cation/H+ exchanger

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A7H1-F1-model_v2	AlphaFold	D4A7H1	1-644	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696184

Promoter ID:

EPDNEW_R6709

Type:

initiation region

Name:

Slc9a9_1

Description:

solute carrier family 9 member A9

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	102,304,095 - 102,304,155	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560736	AgrOrtholog
BioCyc Gene	G2FUF-29502	BioCyc
Ensembl Genes	ENSRNOG00000008554	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00055017495	UniProtKB/Swiss-Prot
	ENSRNOG00060011912	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000011358	ENTREZGENE
	ENSRNOT00000011358.8	UniProtKB/Swiss-Prot
	ENSRNOT00055029594	UniProtKB/Swiss-Prot
	ENSRNOT00060020165	UniProtKB/Swiss-Prot
Gene3D-CATH	6.10.140.1330	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Cation/H_exchanger	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cation/H_exchanger_CPA1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NaH_exchanger	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NHE-6/7/9	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:363115	UniProtKB/Swiss-Prot
NCBI Gene	363115	ENTREZGENE
PANTHER	SODIUM/HYDROGEN EXCHANGER	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SODIUM/HYDROGEN EXCHANGER 9	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Na_H_Exchanger	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc9a9	PhenoGen
PRINTS	NAHEXCHNGR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NAHEXCHNGR6	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008554	RatGTEx
	ENSRNOG00055017495	RatGTEx
	ENSRNOG00060011912	RatGTEx
UniProt	A6I251	ENTREZGENE, UniProtKB/TrEMBL
	D4A7H1	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-01	Slc9a9	solute carrier family 9 member A9	Slc9a9	solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-16	Slc9a9	solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9	Slc9a9	solute carrier family 9 (sodium/hydrogen exchanger), isoform 9	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-06-03	RGD1560736	similar to solute carrier family 9 (sodium/hydrogen exchanger), isoform 9	Slc9a9	solute carrier family 9 (sodium/hydrogen exchanger), isoform 9	Data merged from RGD:1306369	737654	APPROVED
2011-06-03	Slc9a9	solute carrier family 9 (sodium/hydrogen exchanger), isoform 9	RGD1560736	similar to solute carrier family 9 (sodium/hydrogen exchanger), isoform 9	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Slc9a9	solute carrier family 9 (sodium/hydrogen exchanger), isoform 9	Slc9a9_predicted	solute carrier family 9 (sodium/hydrogen exchanger), isoform 9 (predicted)	'predicted' is removed	2292626	APPROVED
2008-04-30	RGD1560736	similar to solute carrier family 9 (sodium/hydrogen exchanger), isoform 9	RGD1560736_predicted	similar to solute carrier family 9 (sodium/hydrogen exchanger), isoform 9 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1560736_predicted	similar to solute carrier family 9 (sodium/hydrogen exchanger), isoform 9 (predicted)	LOC363115	similar to solute carrier family 9 (sodium/hydrogen exchanger), isoform 9	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC363115	similar to solute carrier family 9 (sodium/hydrogen exchanger), isoform 9			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-12	Slc9a9_predicted	solute carrier family 9 (sodium/hydrogen exchanger), isoform 9 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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