RGD1560648 (similar to DJ-1 protein)

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Keyword

Gene: RGD1560648 (similar to DJ-1 protein) Rattus norvegicus

Symbol:

RGD1560648

Name:

similar to DJ-1 protein

Description:

PARTICIPATES IN Parkinson disease pathway; INTERACTS WITH ammonium chloride; indole-3-methanol

Type:

pseudo

RefSeq Status:

INFERRED

Also known as:

LOC364583; RGD1560648_predicted; similar to DJ-1 protein; similar to DJ-1 protein (predicted)

Related Functional Gene:

Park7

Latest Assembly:

RGSC Genome Assembly v3.4

Position:

Map	Chr	Position	Strand	Source
Rat Cytogenetic Map	16	q11		NCBI
RGSC Genome Assembly v5.0	16	42,274,563 - 42,274,911	-	NCBI
RGSC Genome Assembly v3.4	16	42,629,618 - 42,629,947	-	NCBI
Rat Celera Assembly	16	37,820,325 - 37,820,673	-	NCBI

Model

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Annotation (Toggle Detail/Summary View)

Gene-Chemical Interaction Annotations

Molecular Pathway Annotations

References - curated

RGD Disease Portals

Genomics

QTLs in Region (RGSC Genome Assembly v3.4)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6903319	Bw114	Body weight QTL 114	2.7	.0037	Body weight		16	172013	45172013	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		.03	Aerobic running capacity	best distance run to exhaustion	16	350121	85734479	Rat
2293343	Glom16	Glomerulus QTL 16	9.1		Renal pathology	glomerulus inflammation	16	819225	49333382	Rat
2312660	Bw95	Body weight QTL 95		.05	Body weight	adiposity index	16	819225	63306215	Rat
2312663	Slep9	Serum leptin concentration QTL 9		.001	Hormone level	leptin	16	819225	63306215	Rat
2312666	Insul16	Insulin level QTL 16		.01	Insulin level	serum	16	819225	63306215	Rat
2312669	Stl23	Serum triglyceride level QTL 23		.01	Lipid level	triglyceride	16	819225	63306215	Rat
1354625	Despr7	Despair related QTL 7		.016	Activity level	immobility and climbing levels	16	1632183	46632183	Rat
2306902	Bp339	Blood pressure QTL 339		.01	Blood pressure	salt-loaded systolic	16	3464719	46137590	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.325		Blood pressure		16	4304396	46137590	Rat
61338	Bp23	Blood pressure QTL 23	4.3		Blood pressure	salt-loaded systolic	16	4304396	49304396	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		Liver tumor susceptibility	nodule number	16	4304396	50266190	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	.001	Glucose level		16	4304396	52304351	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		Consumption level	alcohol preference	16	4304396	64081533	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.2		Gastric tumor resistance	tumor invasions depth	16	18121291	70196694	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		Glucose level	postprandial	16	19510772	80047126	Rat
2302057	Pia29	Pristane induced arthritis QTL 29	3.6	.001	Joint/bone inflammation	pristane induced	16	24934312	69934312	Rat
6903294	Stl30	Serum triglyceride level QTL 30	2.6	.0013	Lipid level	triglyceride level	16	28455247	73455247	Rat
1298529	Arunc1	Aerobic running capacity QTL 1	4		Aerobic running capacity		16	35339929	63977788	Rat
1578768	Stresp22	Stress response QTL 22	2.8		Stress response	thymus weight	16	39026337	84026337	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	.0001	Bone structure		16	41581459	86581459	Rat
2300163	Bmd64	Bone mineral density QTL 64	5.3	.0001	Bone mineral density		16	41581459	86581459	Rat

Sequence

Nucleotide Sequences

Protein Sequences

Strain Variation

Strain Sequence Variants

ACI/Eur (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

ACI/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN-Lx (ICL)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Imperial College London (Dr Timothy Aitman)
Platform:	SOLID
Secondary Analysis:	BWA, GATK, Samtools
Breeder:	Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information:	MC-A654-5QB00

BN-Lx (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN/NHsdMcwi (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN/SsN (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

Buf/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

COP/Crl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) Univiersity of Wisconsin (Jim Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5
Breeder:	Charles River
Grant Information:	NIH (CA77876)

F344/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

FHH/EurMcwi (MDC)

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Sequenced By:	Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5

LE/Stm (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Dr. Tadao Serikawa, Kyoto Japan.
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

M520/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

MR/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SHR/Olalpcv (ICL)

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Sequenced By:	Imperial College London (Dr Timothy Aitman) University of British Columbia (Dr. Steven Jones)
Platform:	Illumina Hi-seq 2000 and GAII
Secondary Analysis:	BWA, GATK
Breeder:	Institute of Physiology, Academy of Sciences of the Czech Republic, Prague
Grant Information:	LSHG-CT-2005-019015, HEALTH-F4-2010-241504

SHR/Olalpcv (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Imperial College London (Dr Timothy Aitman)
Platform:	Illumina
Secondary Analysis:	GATK
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SHRSP/Gcrc (MDC)

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Sequenced By:	Max Delbruch Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	University of Glasgow, Anna Dominiczak
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Breeder:	Harlan

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Grant Information:	R01 HL089930

SS/JrHsdMcwi (MDC)

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Sequenced By:	Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

WKY/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

WN/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

Additional Information

External Database Links

Nomenclature History

More on RGD1560648
	Entrez Gene
	Ensembl Gene
	Genome Browser
	NCBI Map Viewer
	Vista
	Vista + UCSC

RGD Object Information
RGD ID:	1560648
Created:	2006-02-09
Species:	Rattus norvegicus
Last Modified:	2013-04-16
Status:	ACTIVE