Zbtb20 (zinc finger and BTB domain containing 20) - Rat Genome Database

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Gene: Zbtb20 (zinc finger and BTB domain containing 20) Rattus norvegicus
Analyze
Symbol: Zbtb20
Name: zinc finger and BTB domain containing 20
RGD ID: 1560387
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including cellular response to glucose stimulus; positive regulation of glycolytic process; and regulation of gene expression. Predicted to be located in cytoplasm and nuclear body. Predicted to be active in nucleoplasm. Orthologous to human ZBTB20 (zinc finger and BTB domain containing 20); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC288105; RGD1560387; similar to Zbtb20 protein; zinc finger and BTB domain-containing protein 20
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Zbtb20Tn(pb-Bhr7)1Wmukf  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81170,558,010 - 71,297,039 (-)NCBIGRCr8
mRatBN7.21157,052,129 - 57,791,214 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1157,072,880 - 57,510,210 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1165,865,277 - 66,604,324 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01158,527,515 - 59,266,582 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01157,583,947 - 58,333,500 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01162,014,925 - 62,561,113 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1162,014,925 - 62,451,184 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01161,127,464 - 61,865,305 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41158,662,837 - 59,399,213 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1156,625,650 - 57,340,896 (-)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bilirubin IXalpha  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buspirone  (EXP)
butanal  (ISO)
C60 fullerene  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
choline  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
daunorubicin  (ISO)
DDT  (EXP)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
finasteride  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
geraniol  (ISO)
glafenine  (EXP)
glyphosate  (EXP)
hydroquinone O-beta-D-glucopyranoside  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
L-methionine  (ISO)
melphalan  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
propiconazole  (EXP,ISO)
resorcinol  (ISO)
SB 431542  (ISO)
sevoflurane  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
styrene  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (EXP,ISO)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nuclear body  (IEA,ISO)
nucleoplasm  (IBA,ISO)
nucleus  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11744704   PMID:17301088   PMID:18669658   PMID:22082260   PMID:23776228   PMID:28327662   PMID:30281617   PMID:31505169   PMID:38009899  


Genomics

Comparative Map Data
Zbtb20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81170,558,010 - 71,297,039 (-)NCBIGRCr8
mRatBN7.21157,052,129 - 57,791,214 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1157,072,880 - 57,510,210 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1165,865,277 - 66,604,324 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01158,527,515 - 59,266,582 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01157,583,947 - 58,333,500 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01162,014,925 - 62,561,113 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1162,014,925 - 62,451,184 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01161,127,464 - 61,865,305 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41158,662,837 - 59,399,213 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1156,625,650 - 57,340,896 (-)NCBICelera
Cytogenetic Map11q21NCBI
ZBTB20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383114,314,500 - 115,147,288 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3114,314,500 - 115,147,292 (-)EnsemblGRCh38hg38GRCh38
GRCh373114,033,347 - 114,866,135 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363115,540,207 - 116,348,817 (-)NCBINCBI36Build 36hg18NCBI36
Build 343115,540,214 - 116,348,817NCBI
Celera3112,464,305 - 113,273,740 (-)NCBICelera
Cytogenetic Map3q13.31NCBI
HuRef3111,429,714 - 112,238,947 (-)NCBIHuRef
CHM1_13114,019,853 - 114,829,143 (-)NCBICHM1_1
T2T-CHM13v2.03117,035,293 - 117,867,765 (-)NCBIT2T-CHM13v2.0
Zbtb20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391642,728,008 - 43,462,981 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1642,696,244 - 43,462,965 (+)EnsemblGRCm39 Ensembl
GRCm381642,875,689 - 43,634,392 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1642,875,881 - 43,642,602 (+)EnsemblGRCm38mm10GRCm38
MGSCv371643,247,397 - 43,619,241 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361643,429,640 - 43,538,402 (+)NCBIMGSCv36mm8
Celera1643,602,896 - 43,973,689 (+)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1628.44NCBI
Zbtb20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542714,409,700 - 14,453,926 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542714,409,700 - 15,231,495 (-)NCBIChiLan1.0ChiLan1.0
ZBTB20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22112,299,158 - 113,129,391 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13112,303,936 - 113,134,146 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03111,445,520 - 112,275,946 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13118,365,142 - 118,806,716 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3118,389,250 - 118,431,453 (-)Ensemblpanpan1.1panPan2
ZBTB20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13318,860,824 - 19,277,691 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3318,529,132 - 18,759,058 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3318,969,248 - 19,387,126 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03318,774,605 - 19,529,023 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3318,773,579 - 19,528,961 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13318,915,382 - 19,333,223 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03318,961,846 - 19,380,040 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03319,174,504 - 19,925,316 (-)NCBIUU_Cfam_GSD_1.0
Zbtb20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602134,975,624 - 135,767,604 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365361,776,081 - 1,829,837 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365361,776,065 - 2,546,286 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13145,591,894 - 145,644,880 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113144,855,821 - 145,668,320 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZBTB20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12265,715,470 - 66,528,195 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2266,511,237 - 66,524,064 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604199,934,836 - 100,649,336 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473134,108,927 - 34,172,231 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473133,307,686 - 34,202,576 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zbtb20
1992 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:443
Count of miRNA genes:228
Interacting mature miRNAs:296
Transcripts:ENSRNOT00000002692
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat

Markers in Region
D11Got47  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,615,452 - 57,615,671 (+)MAPPERmRatBN7.2
Rnor_6.01162,556,663 - 62,556,883NCBIRnor6.0
Rnor_5.01161,689,504 - 61,689,724UniSTSRnor5.0
RGSC_v3.41159,220,404 - 59,220,625RGDRGSC3.4
RGSC_v3.41159,220,405 - 59,220,625UniSTSRGSC3.4
RGSC_v3.11159,277,994 - 59,278,214RGD
Celera1157,166,394 - 57,166,614UniSTS
RH 3.4 Map11512.6UniSTS
RH 3.4 Map11512.6RGD
RH 2.0 Map11207.7RGD
Cytogenetic Map11q21UniSTS
D11Got49  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,615,444 - 57,615,683 (+)MAPPERmRatBN7.2
Rnor_6.01162,556,655 - 62,556,895NCBIRnor6.0
Rnor_5.01161,689,496 - 61,689,736UniSTSRnor5.0
RGSC_v3.41159,220,396 - 59,220,638RGDRGSC3.4
RGSC_v3.41159,220,397 - 59,220,637UniSTSRGSC3.4
RGSC_v3.11159,277,985 - 59,278,227RGD
Celera1157,166,386 - 57,166,626UniSTS
RH 3.4 Map11513.1RGD
RH 3.4 Map11513.1UniSTS
Cytogenetic Map11q21UniSTS
D11Got109  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,433,867 - 57,434,075 (+)MAPPERmRatBN7.2
Rnor_6.01162,375,769 - 62,375,974NCBIRnor6.0
Rnor_5.01161,508,610 - 61,508,815UniSTSRnor5.0
RGSC_v3.41159,038,711 - 59,038,916UniSTSRGSC3.4
Celera1156,985,616 - 56,985,821UniSTS
Cytogenetic Map11q21UniSTS
D16Mit40  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,702,900 - 57,703,140 (+)MAPPERmRatBN7.2
Rnor_6.01157,618,781 - 57,619,020NCBIRnor6.0
Rnor_5.01161,776,247 - 61,776,486UniSTSRnor5.0
RGSC_v3.41159,309,732 - 59,309,971UniSTSRGSC3.4
Celera1157,253,207 - 57,253,446UniSTS
Cytogenetic Map11q21UniSTS
BF400664  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,346,447 - 57,346,623 (+)MAPPERmRatBN7.2
Rnor_6.01162,288,367 - 62,288,542NCBIRnor6.0
Rnor_5.01161,421,087 - 61,421,262UniSTSRnor5.0
RGSC_v3.41158,940,594 - 58,940,769UniSTSRGSC3.4
Celera1156,898,275 - 56,898,450UniSTS
RH 3.4 Map11546.92UniSTS
Cytogenetic Map11q21UniSTS
BF419565  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,178,654 - 57,178,786 (+)MAPPERmRatBN7.2
Rnor_6.01162,120,650 - 62,120,781NCBIRnor6.0
Rnor_5.01161,253,620 - 61,253,751UniSTSRnor5.0
RGSC_v3.41158,771,190 - 58,771,321UniSTSRGSC3.4
Celera1156,731,417 - 56,731,548UniSTS
RH 3.4 Map11546.92UniSTS
Cytogenetic Map11q21UniSTS
RH138206  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,119,018 - 57,119,218 (+)MAPPERmRatBN7.2
Rnor_6.01162,061,018 - 62,061,217NCBIRnor6.0
Rnor_5.01161,194,089 - 61,194,288UniSTSRnor5.0
RGSC_v3.41158,709,395 - 58,709,594UniSTSRGSC3.4
Celera1156,671,766 - 56,671,965UniSTS
Cytogenetic Map11q21UniSTS
RH138427  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,073,865 - 57,074,040 (+)MAPPERmRatBN7.2
Rnor_6.01162,015,911 - 62,016,085NCBIRnor6.0
Rnor_5.01161,148,982 - 61,149,156UniSTSRnor5.0
RGSC_v3.41158,663,823 - 58,663,997UniSTSRGSC3.4
Celera1156,626,636 - 56,626,810UniSTS
RH 3.4 Map41028.2UniSTS
Cytogenetic Map11q21UniSTS
RH139605  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,073,363 - 57,073,555 (+)MAPPERmRatBN7.2
Rnor_6.01162,015,409 - 62,015,600NCBIRnor6.0
Rnor_5.01161,148,480 - 61,148,671UniSTSRnor5.0
RGSC_v3.41158,663,321 - 58,663,512UniSTSRGSC3.4
Celera1156,626,134 - 56,626,325UniSTS
Cytogenetic Map11q21UniSTS
RH140468  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,073,363 - 57,073,491 (+)MAPPERmRatBN7.2
Rnor_6.01162,015,409 - 62,015,536NCBIRnor6.0
Rnor_5.01161,148,480 - 61,148,607UniSTSRnor5.0
RGSC_v3.41158,663,321 - 58,663,448UniSTSRGSC3.4
Celera1156,626,134 - 56,626,261UniSTS
Cytogenetic Map11q21UniSTS
AU049731  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,776,874 - 57,777,139 (+)MAPPERmRatBN7.2
Rnor_6.01157,693,306 - 57,693,570NCBIRnor6.0
Rnor_5.01161,850,847 - 61,851,111UniSTSRnor5.0
RGSC_v3.41159,384,874 - 59,385,138UniSTSRGSC3.4
Celera1157,326,559 - 57,326,823UniSTS
Cytogenetic Map11q21UniSTS
Zbtb20  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,084,533 - 57,085,345 (+)MAPPERmRatBN7.2
Rnor_6.01162,026,579 - 62,027,390NCBIRnor6.0
Rnor_5.01161,159,650 - 61,160,461UniSTSRnor5.0
RGSC_v3.41158,674,920 - 58,675,731UniSTSRGSC3.4
Celera1156,637,304 - 56,638,115UniSTS
Cytogenetic Map11q21UniSTS
ZBTB20_9462  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,075,429 - 57,076,381 (+)MAPPERmRatBN7.2
Rnor_6.01162,017,475 - 62,018,426NCBIRnor6.0
Rnor_5.01161,150,546 - 61,151,497UniSTSRnor5.0
RGSC_v3.41158,665,387 - 58,666,338UniSTSRGSC3.4
Celera1156,628,200 - 56,629,151UniSTS
Cytogenetic Map11q21UniSTS
STS-Z40707  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,295,345 - 57,295,800 (+)MAPPERmRatBN7.2
Rnor_6.01162,237,168 - 62,237,622NCBIRnor6.0
Rnor_5.01161,369,888 - 61,370,342UniSTSRnor5.0
RGSC_v3.41158,888,671 - 58,889,125UniSTSRGSC3.4
RGSC_v3.41225,076,071 - 25,077,759UniSTSRGSC3.4
Celera1156,847,170 - 56,847,624UniSTS
Cytogenetic Map11q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 9 25 10 15 10 8 8 19 11 7 10 8
Low 2 34 20 19 4 19 3 55 24 30 1
Below cutoff 12 12 12 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000081443   ⟹   ENSRNOP00000072458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1157,072,880 - 57,510,210 (-)Ensembl
Rnor_6.0 Ensembl1162,014,925 - 62,451,184 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093141   ⟹   ENSRNOP00000076280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1157,084,763 - 57,328,562 (-)Ensembl
Rnor_6.0 Ensembl1162,017,717 - 62,128,044 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093179   ⟹   ENSRNOP00000076193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1162,017,745 - 62,396,967 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093382   ⟹   ENSRNOP00000076135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1162,017,705 - 62,067,655 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093596   ⟹   ENSRNOP00000076312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1162,017,758 - 62,396,909 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093686   ⟹   ENSRNOP00000076181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1162,027,571 - 62,451,149 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119899   ⟹   ENSRNOP00000091721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1157,072,880 - 57,090,559 (-)Ensembl
RefSeq Acc Id: NM_001105880   ⟹   NP_001099350
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81170,558,010 - 71,297,039 (-)NCBI
mRatBN7.21157,052,129 - 57,791,214 (-)NCBI
Rnor_6.01162,014,925 - 62,561,113 (-)NCBI
Rnor_5.01161,127,464 - 61,865,305 (-)NCBI
RGSC_v3.41158,662,837 - 59,399,213 (-)RGD
Celera1156,625,650 - 57,340,896 (-)RGD
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001099350   ⟸   NM_001105880
- UniProtKB: A0A1W2Q655 (UniProtKB/TrEMBL),   D4A1U1 (UniProtKB/TrEMBL),   A6IR28 (UniProtKB/TrEMBL),   A6IR32 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000076312   ⟸   ENSRNOT00000093596
RefSeq Acc Id: ENSRNOP00000076181   ⟸   ENSRNOT00000093686
RefSeq Acc Id: ENSRNOP00000076135   ⟸   ENSRNOT00000093382
RefSeq Acc Id: ENSRNOP00000072458   ⟸   ENSRNOT00000081443
RefSeq Acc Id: ENSRNOP00000076193   ⟸   ENSRNOT00000093179
RefSeq Acc Id: ENSRNOP00000076280   ⟸   ENSRNOT00000093141
RefSeq Acc Id: ENSRNOP00000091721   ⟸   ENSRNOT00000119899
Protein Domains
BTB   C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1W2Q655-F1-model_v2 AlphaFold A0A1W2Q655 1-741 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698159
Promoter ID:EPDNEW_R8681
Type:multiple initiation site
Name:Zbtb20_1
Description:zinc finger and BTB domain containing 20
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01162,396,967 - 62,397,027EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560387 AgrOrtholog
BioCyc Gene G2FUF-21327 BioCyc
Ensembl Genes ENSRNOG00000056716 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000081443 ENTREZGENE
  ENSRNOT00000081443.2 UniProtKB/TrEMBL
  ENSRNOT00000093141.2 UniProtKB/TrEMBL
  ENSRNOT00000119899.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:288105 UniProtKB/TrEMBL
NCBI Gene 288105 ENTREZGENE
PANTHER AGAP004733-PA UniProtKB/TrEMBL
  AGAP004733-PA UniProtKB/TrEMBL
  ZGC:76872 UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zbtb20 PhenoGen
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000056716 RatGTEx
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A1W2Q655 ENTREZGENE
  A0A1W2Q6H7_RAT UniProtKB/TrEMBL
  A0A8I6AG19_RAT UniProtKB/TrEMBL
  A6IR28 ENTREZGENE, UniProtKB/TrEMBL
  A6IR32 ENTREZGENE, UniProtKB/TrEMBL
  D4A1U1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A1W2Q655 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Zbtb20  zinc finger and BTB domain containing 20   Zbtb20_predicted  zinc finger and BTB domain containing 20 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Zbtb20_predicted  zinc finger and BTB domain containing 20 (predicted)  RGD1560387_predicted  similar to Zbtb20 protein (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1560387_predicted  similar to Zbtb20 protein (predicted)  LOC288105  similar to Zbtb20 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC288105  similar to Zbtb20 protein      Symbol and Name status set to provisional 70820 PROVISIONAL